Wall clock time and date at job start Tue Mar 31 2020 06:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99688 * 2 1 4 4 C 1.38759 * 120.05657 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94261 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05836 * 359.97166 * 5 4 3 7 7 C 1.38241 * 120.11015 * 0.30563 * 6 5 4 8 8 C 1.50702 * 119.97227 * 179.72421 * 7 6 5 9 9 C 1.50698 * 115.55031 * 209.55401 * 8 7 6 10 10 O 1.21284 * 119.99926 * 246.01858 * 9 8 7 11 11 N 1.34779 * 120.00273 * 66.01614 * 9 8 7 12 12 C 1.46501 * 119.99585 * 5.56290 * 11 9 8 13 13 C 1.46499 * 120.00228 * 185.55955 * 11 9 8 14 14 C 1.50703 * 109.46621 * 90.00105 * 13 11 9 15 15 H 1.07992 * 120.00222 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99840 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00050 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99990 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47438 * 90.00094 * 18 16 14 20 20 H 1.48506 * 109.47295 * 210.00512 * 18 16 14 21 21 H 1.48504 * 109.47168 * 330.00111 * 18 16 14 22 22 C 1.53001 * 117.50051 * 63.87689 * 8 7 6 23 23 C 1.53005 * 117.49712 * 355.21825 * 8 7 6 24 24 C 1.38171 * 120.05702 * 359.44008 * 7 6 5 25 25 H 1.08998 * 109.46842 * 60.00579 * 1 2 3 26 26 H 1.09003 * 109.46646 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47725 * 300.00003 * 1 2 3 28 28 H 1.07999 * 120.02366 * 359.95633 * 4 3 2 29 29 H 1.08007 * 119.97173 * 180.02562 * 5 4 3 30 30 H 1.07996 * 119.94387 * 180.02562 * 6 5 4 31 31 H 1.09007 * 109.46815 * 84.78786 * 12 11 9 32 32 H 1.09002 * 109.46742 * 204.78112 * 12 11 9 33 33 H 1.08996 * 109.47340 * 324.78581 * 12 11 9 34 34 H 1.08995 * 109.47445 * 210.00425 * 13 11 9 35 35 H 1.09004 * 109.47299 * 330.00826 * 13 11 9 36 36 H 0.96996 * 120.00450 * 179.97438 * 17 16 14 37 37 H 1.09001 * 117.49866 * 0.02562 * 22 8 7 38 38 H 1.08999 * 117.49732 * 145.01989 * 22 8 7 39 39 H 1.09000 * 117.49831 * 214.97837 * 23 8 7 40 40 H 1.09000 * 117.50045 * 359.97438 * 23 8 7 41 41 H 1.07993 * 120.02881 * 180.29522 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3017 3.6759 0.0017 7 6 4.0558 2.5173 -0.0036 8 6 5.5606 2.5984 -0.0080 9 6 6.2713 1.4541 -0.6837 10 8 6.9615 0.6993 -0.0320 11 7 6.1397 1.2694 -2.0123 12 6 5.4070 2.2486 -2.8189 13 6 6.7294 0.0895 -2.6498 14 6 5.7269 -1.0356 -2.6489 15 1 4.7483 -0.8866 -2.2171 16 6 6.0587 -2.2551 -3.2003 17 7 7.2502 -2.4364 -3.7266 18 14 4.8158 -3.6495 -3.1998 19 1 4.0035 -3.5890 -4.4414 20 1 5.5307 -4.9498 -3.1388 21 1 3.9252 -3.5185 -2.0187 22 6 6.2377 3.2301 1.2100 23 6 6.1929 3.9873 -0.1196 24 6 3.4310 1.2849 0.0012 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2127 2.3203 -0.0017 29 1 1.3337 4.5115 0.0000 30 1 3.7920 4.6382 0.0025 31 1 6.0767 3.0613 -3.1005 32 1 5.0244 1.7652 -3.7179 33 1 4.5751 2.6477 -2.2387 34 1 7.0043 0.3305 -3.6766 35 1 7.6185 -0.2156 -2.0978 36 1 7.4839 -3.2943 -4.1142 37 1 5.5947 3.5866 2.0147 38 1 7.1973 2.8181 1.5224 39 1 7.1230 4.0731 -0.6814 40 1 5.5204 4.8422 -0.1903 41 1 4.0206 0.3801 0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350078422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:10 Heat of formation + Delta-G solvation = -36.359160 kcal Electronic energy + Delta-G solvation = -23581.875923 eV Core-core repulsion = 20234.454790 eV Total energy + Delta-G solvation = -3347.421134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74276 -40.63062 -38.78743 -37.04093 -36.53764 -34.71503 -32.08314 -30.81413 -29.98971 -28.23517 -27.48086 -26.10906 -24.27410 -23.85525 -23.04279 -22.04229 -19.92123 -18.94792 -18.64317 -17.63181 -17.27832 -17.18415 -16.78508 -16.66934 -16.38978 -16.12772 -15.57783 -14.91604 -14.70256 -14.39634 -14.16422 -14.00333 -13.83919 -13.62045 -13.48337 -13.18533 -12.97716 -12.86789 -12.77576 -12.61558 -12.27816 -12.25558 -12.08626 -11.96203 -11.76970 -11.53423 -11.45110 -10.69125 -10.60705 -9.68282 -9.46539 -9.13529 -8.27687 -6.42120 0.29272 0.49208 1.28660 1.32359 1.43577 1.67768 2.25128 2.34577 2.39626 2.60341 3.00994 3.03493 3.51946 3.60817 3.85294 3.92771 4.01569 4.15959 4.26546 4.30580 4.37011 4.40359 4.54512 4.65513 4.66551 4.67414 4.72690 4.80929 4.89325 4.94655 4.97575 5.04541 5.17276 5.20095 5.36356 5.49779 5.51834 5.61393 5.79919 5.86417 6.01093 6.49304 6.64278 6.72989 7.22375 7.41202 8.79460 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.007033 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.069273 B = 3980.454482 C = 5667.326589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.354 6.354 3 C 0.115 3.885 4 C -0.208 4.208 5 C -0.064 4.064 6 C -0.148 4.148 7 C 0.002 3.998 8 C -0.144 4.144 9 C 0.536 3.464 10 O -0.601 6.601 11 N -0.599 5.599 12 C 0.083 3.917 13 C 0.259 3.741 14 C -0.541 4.541 15 H 0.045 0.955 16 C 0.011 3.989 17 N -0.925 5.925 18 Si 0.962 3.038 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.280 1.280 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.176 4.176 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.156 0.844 29 H 0.172 0.828 30 H 0.165 0.835 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.027 0.973 35 H -0.001 1.001 36 H 0.269 0.731 37 H 0.130 0.870 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.151 0.849 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.994 18.422 6.448 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.269 6.269 3 C 0.070 3.930 4 C -0.226 4.226 5 C -0.082 4.082 6 C -0.165 4.165 7 C 0.001 3.999 8 C -0.147 4.147 9 C 0.325 3.675 10 O -0.483 6.483 11 N -0.328 5.328 12 C -0.059 4.059 13 C 0.138 3.862 14 C -0.580 4.580 15 H 0.063 0.937 16 C -0.188 4.188 17 N -0.565 5.565 18 Si 0.786 3.214 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.205 1.205 22 C -0.173 4.173 23 C -0.156 4.156 24 C -0.195 4.195 25 H 0.088 0.912 26 H 0.126 0.874 27 H 0.093 0.907 28 H 0.173 0.827 29 H 0.189 0.811 30 H 0.182 0.818 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.045 0.955 35 H 0.017 0.983 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.169 0.831 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.448 17.697 6.633 23.789 hybrid contribution -0.099 -1.930 -0.219 1.945 sum -14.547 15.767 6.414 22.391 Atomic orbital electron populations 1.23349 0.76127 1.05258 1.02734 1.86109 1.23997 1.27998 1.88792 1.19138 0.91561 0.85449 0.96827 1.21545 1.01129 0.91513 1.08461 1.21362 0.94110 0.97750 0.94930 1.21230 0.94073 0.97556 1.03663 1.18465 0.90821 0.92731 0.97872 1.20061 0.91837 0.95581 1.07210 1.20080 0.80374 0.85138 0.81951 1.90607 1.43244 1.49213 1.65228 1.48009 1.53324 1.24138 1.07347 1.21896 0.96766 0.91461 0.95773 1.18791 0.93022 0.82583 0.91826 1.21629 0.99892 0.97906 1.38560 0.93683 1.25795 0.97460 1.00927 0.94593 1.70037 1.21188 1.25604 1.39664 0.85498 0.78811 0.78271 0.78790 1.18434 1.19962 1.20496 1.23167 1.01672 1.00542 0.91912 1.23402 1.02477 0.91234 0.98495 1.20188 0.92664 0.97811 1.08806 0.91222 0.87416 0.90664 0.82660 0.81102 0.81751 0.90496 0.91908 0.90039 0.95537 0.98326 0.92245 0.85216 0.89654 0.88162 0.83100 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.35 -11.94 10.50 -92.40 -0.97 -12.91 16 3 C 0.12 3.71 6.69 22.51 0.15 3.86 16 4 C -0.21 -4.50 9.04 22.37 0.20 -4.30 16 5 C -0.06 -1.07 10.04 22.25 0.22 -0.85 16 6 C -0.15 -2.89 9.30 22.28 0.21 -2.68 16 7 C 0.00 0.05 3.55 -19.88 -0.07 -0.02 16 8 C -0.14 -4.67 1.37 -53.67 -0.07 -4.74 16 9 C 0.54 25.01 5.75 87.66 0.50 25.52 16 10 O -0.60 -34.54 16.26 -3.04 -0.05 -34.59 16 11 N -0.60 -28.15 2.86 -851.12 -2.43 -30.58 16 12 C 0.08 2.90 10.09 127.77 1.29 4.18 16 13 C 0.26 15.04 5.18 85.63 0.44 15.49 16 14 C -0.54 -33.58 9.39 25.60 0.24 -33.34 16 15 H 0.04 2.85 7.81 -2.91 -0.02 2.83 16 16 C 0.01 0.70 5.46 84.66 0.46 1.16 16 17 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 18 Si 0.96 47.83 29.54 68.60 2.03 49.86 16 19 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 22 C -0.14 -3.54 9.73 30.62 0.30 -3.25 16 23 C -0.12 -2.52 9.42 30.62 0.29 -2.24 16 24 C -0.18 -6.73 9.26 22.37 0.21 -6.52 16 25 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 26 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 28 H 0.16 2.33 6.30 -2.91 -0.02 2.31 16 29 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 30 H 0.17 1.91 5.95 -2.91 -0.02 1.89 16 31 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.06 2.28 8.03 -2.39 -0.02 2.26 16 33 H 0.08 2.50 5.38 -2.39 -0.01 2.49 16 34 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 35 H 0.00 -0.09 7.35 -2.38 -0.02 -0.11 16 36 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.13 2.61 8.14 -2.39 -0.02 2.60 16 38 H 0.08 2.60 8.00 -2.39 -0.02 2.58 16 39 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.15 1.81 6.11 -2.39 -0.01 1.79 16 41 H 0.07 3.62 7.33 -2.91 -0.02 3.60 16 Total: -1.00 -86.48 342.42 5.37 -81.10 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.03 Total: 11.30 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.48 Total: -6.23 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -2.15 Total: -88.54 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -1.02 Total: -47.50 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -86.48 5.37 -81.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350078422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.743 kcal (2) G-P(sol) polarization free energy of solvation -86.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds