Wall clock time and date at job start Tue Mar 31 2020 06:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00283 * 2 1 4 4 C 1.50695 * 109.47345 * 270.00662 * 3 2 1 5 5 H 1.08005 * 119.99947 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00292 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99856 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00315 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47273 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47131 * 119.99839 * 8 6 4 11 11 H 1.48498 * 109.47553 * 239.99685 * 8 6 4 12 12 C 1.34778 * 119.99630 * 180.02562 * 2 1 3 13 13 O 1.21580 * 119.99788 * 184.31935 * 12 2 1 14 14 C 1.47604 * 120.00374 * 4.31570 * 12 2 1 15 15 C 1.39731 * 120.08607 * 147.87460 * 14 12 2 16 16 C 1.37710 * 119.90930 * 180.02562 * 15 14 12 17 17 C 1.38994 * 120.08515 * 359.97438 * 16 15 14 18 18 O 1.35709 * 119.90872 * 179.97438 * 17 16 15 19 19 C 1.42901 * 117.00305 * 179.97438 * 18 17 16 20 20 C 1.52996 * 109.47557 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.49885 * 243.74948 * 20 19 18 22 22 C 1.52995 * 117.50002 * 175.08841 * 20 19 18 23 23 C 1.38994 * 120.18072 * 0.25696 * 17 16 15 24 24 C 1.37710 * 120.08480 * 359.48967 * 23 17 16 25 25 H 1.09001 * 109.46766 * 274.69119 * 1 2 3 26 26 H 1.09003 * 109.47070 * 34.68741 * 1 2 3 27 27 H 1.08995 * 109.47339 * 154.69239 * 1 2 3 28 28 H 1.08999 * 109.46774 * 30.00313 * 3 2 1 29 29 H 1.08993 * 109.46922 * 150.00160 * 3 2 1 30 30 H 0.97003 * 120.00591 * 180.02562 * 7 6 4 31 31 H 1.08003 * 120.04649 * 0.04072 * 15 14 12 32 32 H 1.07997 * 119.95572 * 179.97438 * 16 15 14 33 33 H 1.09003 * 109.46968 * 299.99815 * 19 18 17 34 34 H 1.09006 * 109.47191 * 59.99600 * 19 18 17 35 35 H 1.09000 * 115.54958 * 29.41283 * 20 19 18 36 36 H 1.09005 * 117.49970 * 359.97438 * 21 20 19 37 37 H 1.08991 * 117.49910 * 145.01854 * 21 20 19 38 38 H 1.08997 * 117.50120 * 214.97929 * 22 20 19 39 39 H 1.09000 * 117.50070 * 359.97438 * 22 20 19 40 40 H 1.08002 * 119.95809 * 179.72490 * 23 17 16 41 41 H 1.08000 * 120.04454 * 180.23204 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0980 1.0959 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5544 3.6175 -0.6731 8 14 3.4388 3.4165 -3.4338 9 1 2.8605 2.4167 -4.3672 10 1 2.8017 4.7374 -3.6673 11 1 4.9014 3.5242 -3.6670 12 6 2.1389 -1.1673 -0.0005 13 8 3.3521 -1.1688 0.0788 14 6 1.4040 -2.4437 -0.0973 15 6 1.9826 -3.5377 -0.7460 16 6 1.2935 -4.7267 -0.8346 17 6 0.0243 -4.8395 -0.2794 18 8 -0.6518 -6.0127 -0.3692 19 6 -1.9511 -6.0598 0.2236 20 6 -2.5534 -7.4518 0.0225 21 6 -3.8198 -7.5573 -0.8297 22 6 -3.9003 -7.7417 0.6878 23 6 -0.5567 -3.7521 0.3626 24 6 0.1280 -2.5613 0.4600 25 1 -0.3633 0.0841 1.0243 26 1 -0.3633 0.8450 -0.5849 27 1 -0.3634 -0.9290 -0.4393 28 1 1.6085 2.0283 0.5139 29 1 3.1499 1.1383 0.5138 30 1 4.0312 4.4434 -0.8502 31 1 2.9691 -3.4510 -1.1771 32 1 1.7399 -5.5725 -1.3362 33 1 -1.8718 -5.8485 1.2900 34 1 -2.5928 -5.3152 -0.2477 35 1 -1.8359 -8.2701 -0.0389 36 1 -4.2241 -6.6349 -1.2467 37 1 -3.9356 -8.4451 -1.4513 38 1 -4.0691 -8.7507 1.0639 39 1 -4.3572 -6.9408 1.2692 40 1 -1.5449 -3.8424 0.7889 41 1 -0.3226 -1.7180 0.9622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352837890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:42 Heat of formation + Delta-G solvation = -4.450283 kcal Electronic energy + Delta-G solvation = -22020.533846 eV Core-core repulsion = 18674.496385 eV Total energy + Delta-G solvation = -3346.037461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46165 -39.20752 -37.73276 -36.52522 -34.94735 -32.71356 -31.18800 -30.30192 -28.21530 -27.31306 -26.05694 -23.60245 -22.87102 -22.84831 -21.93213 -20.85145 -19.13126 -18.27015 -16.75099 -16.66074 -16.50957 -16.09022 -15.44747 -15.06013 -14.75757 -14.46635 -14.36230 -14.19682 -13.58638 -13.40661 -13.00976 -12.92003 -12.34175 -12.24260 -12.18851 -11.99725 -11.73264 -11.57434 -11.37148 -11.17309 -10.94479 -10.87884 -10.65026 -10.51923 -10.36691 -10.15763 -9.61514 -9.01827 -8.96656 -8.43785 -8.16797 -7.64150 -6.04174 -4.09039 1.16144 1.35772 2.80776 3.30283 3.32425 3.37029 3.38319 3.42783 3.86533 4.15889 4.27237 4.39580 4.45309 4.52948 4.69766 4.74849 4.87420 4.97534 5.08513 5.11930 5.17747 5.30353 5.31096 5.40987 5.42318 5.62394 5.63576 5.65592 5.75148 5.83977 5.99952 6.16568 6.21783 6.25792 6.51955 6.68818 7.07428 7.27509 7.45118 7.53324 7.92481 8.23175 8.39601 8.89855 9.07946 9.56132 11.03933 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.002864 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.899883 B = 9775.510002 C = 9847.919339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.595 5.595 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.548 3.452 13 O -0.540 6.540 14 C -0.155 4.155 15 C -0.026 4.026 16 C -0.160 4.160 17 C 0.141 3.859 18 O -0.312 6.312 19 C 0.090 3.910 20 C -0.157 4.157 21 C -0.176 4.176 22 C -0.170 4.170 23 C -0.221 4.221 24 C -0.062 4.062 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.977 -20.214 2.709 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.326 5.326 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.336 3.664 13 O -0.418 6.418 14 C -0.158 4.158 15 C -0.045 4.045 16 C -0.179 4.179 17 C 0.096 3.904 18 O -0.225 6.225 19 C 0.015 3.985 20 C -0.175 4.175 21 C -0.213 4.213 22 C -0.207 4.207 23 C -0.240 4.240 24 C -0.081 4.081 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.147 0.853 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.191 -20.176 2.708 25.400 hybrid contribution -0.081 0.576 -0.864 1.041 sum -15.272 -19.600 1.845 24.916 Atomic orbital electron populations 1.22249 0.81919 1.03180 1.00357 1.48047 1.06088 1.07702 1.70732 1.19336 0.92700 0.77840 0.97647 1.21474 1.36474 1.06323 0.92265 0.92359 1.24943 0.95335 0.96378 0.97502 1.69944 1.38391 1.14336 1.30676 0.86430 0.78100 0.78298 0.84531 1.19775 1.20959 1.20833 1.18084 0.87168 0.83301 0.77877 1.90748 1.13522 1.87126 1.50427 1.20161 0.95780 0.95752 1.04126 1.21070 0.99110 0.90200 0.94157 1.20339 0.93206 0.99091 1.05263 1.19168 0.91861 0.84560 0.94833 1.85990 1.29974 1.32029 1.74539 1.22313 0.82302 0.96103 0.97812 1.22109 0.91358 0.97771 1.06286 1.23126 1.00730 1.03824 0.93637 1.23007 0.98624 1.03321 0.95794 1.21135 1.01950 0.93787 1.07086 1.21741 0.92926 0.97162 0.96225 0.93331 0.90981 0.90717 0.94847 0.93538 0.92748 0.84262 0.84848 0.91409 0.91679 0.86548 0.88428 0.88386 0.88162 0.88428 0.85334 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.80 59.85 0.53 1.61 16 2 N -0.59 -13.07 2.86 -184.17 -0.53 -13.60 16 3 C 0.24 6.50 5.22 -5.20 -0.03 6.47 16 4 C -0.53 -15.14 9.39 -34.44 -0.32 -15.47 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 12 C 0.55 12.15 7.43 -12.44 -0.09 12.06 16 13 O -0.54 -14.20 16.31 5.30 0.09 -14.11 16 14 C -0.15 -2.68 5.47 -104.96 -0.57 -3.25 16 15 C -0.03 -0.42 9.59 -39.22 -0.38 -0.79 16 16 C -0.16 -2.14 9.97 -39.49 -0.39 -2.54 16 17 C 0.14 1.79 6.70 -39.02 -0.26 1.53 16 18 O -0.31 -3.56 10.12 -18.83 -0.19 -3.75 16 19 C 0.09 0.74 5.02 37.16 0.19 0.93 16 20 C -0.16 -1.11 6.05 -90.62 -0.55 -1.66 16 21 C -0.18 -1.06 10.18 -26.69 -0.27 -1.33 16 22 C -0.17 -0.91 10.25 -26.69 -0.27 -1.19 16 23 C -0.22 -2.61 9.01 -39.49 -0.36 -2.97 16 24 C -0.06 -0.86 7.42 -39.22 -0.29 -1.15 16 25 H 0.05 0.66 7.44 -51.93 -0.39 0.27 16 26 H 0.07 1.20 8.11 -51.93 -0.42 0.77 16 27 H 0.07 1.05 4.71 -51.93 -0.24 0.81 16 28 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.14 2.20 7.95 -52.48 -0.42 1.79 16 32 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 34 H 0.07 0.49 7.37 -51.93 -0.38 0.10 16 35 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.56 8.03 -51.93 -0.42 0.14 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.13 1.15 6.28 -52.49 -0.33 0.82 16 41 H 0.15 1.78 4.82 -52.49 -0.25 1.53 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -34.04 343.95 -8.61 -42.66 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.71 Total: -1.25 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -3.17 Total: -6.10 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.21 Total: -39.64 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.10 Total: -17.86 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.04 -8.61 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352837890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.208 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds