Wall clock time and date at job start Tue Mar 31 2020 06:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00283 * 2 1 4 4 C 1.50695 * 109.47345 * 270.00662 * 3 2 1 5 5 H 1.08005 * 119.99947 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00292 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99856 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00315 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47273 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47131 * 119.99839 * 8 6 4 11 11 H 1.48498 * 109.47553 * 239.99685 * 8 6 4 12 12 C 1.34778 * 119.99630 * 180.02562 * 2 1 3 13 13 O 1.21580 * 119.99788 * 184.31935 * 12 2 1 14 14 C 1.47604 * 120.00374 * 4.31570 * 12 2 1 15 15 C 1.39731 * 120.08607 * 147.87460 * 14 12 2 16 16 C 1.37710 * 119.90930 * 180.02562 * 15 14 12 17 17 C 1.38994 * 120.08515 * 359.97438 * 16 15 14 18 18 O 1.35709 * 119.90872 * 179.97438 * 17 16 15 19 19 C 1.42901 * 117.00305 * 179.97438 * 18 17 16 20 20 C 1.52996 * 109.47557 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.49885 * 243.74948 * 20 19 18 22 22 C 1.52995 * 117.50002 * 175.08841 * 20 19 18 23 23 C 1.38994 * 120.18072 * 0.25696 * 17 16 15 24 24 C 1.37710 * 120.08480 * 359.48967 * 23 17 16 25 25 H 1.09001 * 109.46766 * 274.69119 * 1 2 3 26 26 H 1.09003 * 109.47070 * 34.68741 * 1 2 3 27 27 H 1.08995 * 109.47339 * 154.69239 * 1 2 3 28 28 H 1.08999 * 109.46774 * 30.00313 * 3 2 1 29 29 H 1.08993 * 109.46922 * 150.00160 * 3 2 1 30 30 H 0.97003 * 120.00591 * 180.02562 * 7 6 4 31 31 H 1.08003 * 120.04649 * 0.04072 * 15 14 12 32 32 H 1.07997 * 119.95572 * 179.97438 * 16 15 14 33 33 H 1.09003 * 109.46968 * 299.99815 * 19 18 17 34 34 H 1.09006 * 109.47191 * 59.99600 * 19 18 17 35 35 H 1.09000 * 115.54958 * 29.41283 * 20 19 18 36 36 H 1.09005 * 117.49970 * 359.97438 * 21 20 19 37 37 H 1.08991 * 117.49910 * 145.01854 * 21 20 19 38 38 H 1.08997 * 117.50120 * 214.97929 * 22 20 19 39 39 H 1.09000 * 117.50070 * 359.97438 * 22 20 19 40 40 H 1.08002 * 119.95809 * 179.72490 * 23 17 16 41 41 H 1.08000 * 120.04454 * 180.23204 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0980 1.0959 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5544 3.6175 -0.6731 8 14 3.4388 3.4165 -3.4338 9 1 2.8605 2.4167 -4.3672 10 1 2.8017 4.7374 -3.6673 11 1 4.9014 3.5242 -3.6670 12 6 2.1389 -1.1673 -0.0005 13 8 3.3521 -1.1688 0.0788 14 6 1.4040 -2.4437 -0.0973 15 6 1.9826 -3.5377 -0.7460 16 6 1.2935 -4.7267 -0.8346 17 6 0.0243 -4.8395 -0.2794 18 8 -0.6518 -6.0127 -0.3692 19 6 -1.9511 -6.0598 0.2236 20 6 -2.5534 -7.4518 0.0225 21 6 -3.8198 -7.5573 -0.8297 22 6 -3.9003 -7.7417 0.6878 23 6 -0.5567 -3.7521 0.3626 24 6 0.1280 -2.5613 0.4600 25 1 -0.3633 0.0841 1.0243 26 1 -0.3633 0.8450 -0.5849 27 1 -0.3634 -0.9290 -0.4393 28 1 1.6085 2.0283 0.5139 29 1 3.1499 1.1383 0.5138 30 1 4.0312 4.4434 -0.8502 31 1 2.9691 -3.4510 -1.1771 32 1 1.7399 -5.5725 -1.3362 33 1 -1.8718 -5.8485 1.2900 34 1 -2.5928 -5.3152 -0.2477 35 1 -1.8359 -8.2701 -0.0389 36 1 -4.2241 -6.6349 -1.2467 37 1 -3.9356 -8.4451 -1.4513 38 1 -4.0691 -8.7507 1.0639 39 1 -4.3572 -6.9408 1.2692 40 1 -1.5449 -3.8424 0.7889 41 1 -0.3226 -1.7180 0.9622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352837890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:41 Heat of formation + Delta-G solvation = -25.136976 kcal Electronic energy + Delta-G solvation = -22021.430888 eV Core-core repulsion = 18674.496385 eV Total energy + Delta-G solvation = -3346.934503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59116 -40.52411 -38.58723 -37.42904 -36.74576 -34.80746 -32.38166 -31.51522 -29.67947 -28.41724 -27.64075 -25.40320 -23.89118 -23.37705 -23.19981 -21.49933 -20.62717 -19.21535 -18.71671 -18.19817 -17.63717 -17.08984 -16.76960 -16.27958 -16.20360 -15.74442 -15.72699 -15.05074 -14.93948 -14.52832 -14.34624 -14.14100 -13.78943 -13.69537 -13.50369 -13.38985 -12.96903 -12.79185 -12.59816 -12.42528 -12.31264 -12.22909 -12.19316 -11.70619 -11.65107 -11.36044 -10.89820 -10.73471 -10.66613 -10.05624 -9.51811 -9.21523 -8.24450 -6.39704 -0.02199 0.30086 1.35498 1.38085 1.50152 1.86657 2.03542 2.28208 2.42311 2.79672 2.89699 3.04883 3.63011 3.72358 3.77611 3.90443 3.93974 4.07299 4.17054 4.25464 4.29297 4.40010 4.50321 4.57757 4.60649 4.61827 4.81078 4.87647 4.94752 4.97460 5.03552 5.08763 5.17940 5.22624 5.24299 5.26007 5.41757 5.52479 5.61940 5.80761 6.03156 6.37212 6.65970 6.71769 7.23904 7.40135 8.82967 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.002864 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.899883 B = 9775.510002 C = 9847.919339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.602 5.602 3 C 0.257 3.743 4 C -0.545 4.545 5 H 0.051 0.949 6 C 0.007 3.993 7 N -0.927 5.927 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.266 1.266 11 H -0.281 1.281 12 C 0.540 3.460 13 O -0.600 6.600 14 C -0.183 4.183 15 C -0.038 4.038 16 C -0.161 4.161 17 C 0.152 3.848 18 O -0.319 6.319 19 C 0.081 3.919 20 C -0.173 4.173 21 C -0.180 4.180 22 C -0.158 4.158 23 C -0.207 4.207 24 C -0.054 4.054 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.030 0.970 29 H 0.000 1.000 30 H 0.268 0.732 31 H 0.124 0.876 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.168 0.832 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.148 -21.649 2.273 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.332 5.332 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.567 5.567 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.191 1.191 11 H -0.206 1.206 12 C 0.331 3.669 13 O -0.483 6.483 14 C -0.186 4.186 15 C -0.057 4.057 16 C -0.180 4.180 17 C 0.105 3.895 18 O -0.232 6.232 19 C 0.007 3.993 20 C -0.191 4.191 21 C -0.217 4.217 22 C -0.195 4.195 23 C -0.226 4.226 24 C -0.072 4.072 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.048 0.952 29 H 0.018 0.982 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.168 0.832 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.185 0.815 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.430 -21.632 2.279 28.509 hybrid contribution 0.807 0.868 -0.674 1.363 sum -17.623 -20.763 1.606 27.281 Atomic orbital electron populations 1.22596 0.78215 1.04472 1.02756 1.48050 1.08428 1.06171 1.70513 1.18826 0.91272 0.80000 0.96287 1.21706 1.37064 1.06673 0.92872 0.93038 1.25878 0.94774 0.96335 1.02174 1.70056 1.38797 1.14816 1.33009 0.85332 0.77941 0.78441 0.78880 1.19237 1.19145 1.20645 1.18903 0.86830 0.84831 0.76369 1.90693 1.16308 1.88151 1.53163 1.19816 0.97500 0.93563 1.07763 1.21001 0.98953 0.90980 0.94788 1.20435 0.93762 0.98476 1.05311 1.19273 0.91461 0.85265 0.93475 1.86008 1.31423 1.31228 1.74560 1.22626 0.80885 0.97237 0.98557 1.22101 0.91867 0.97026 1.08104 1.23216 0.99921 1.04226 0.94301 1.23112 0.96774 1.04205 0.95436 1.21459 1.03079 0.92270 1.05769 1.21865 0.91291 0.98692 0.95335 0.89931 0.91440 0.88001 0.95235 0.98200 0.92286 0.85844 0.83195 0.90058 0.90304 0.87351 0.88062 0.88079 0.87354 0.87349 0.81462 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.89 8.80 127.77 1.12 3.02 16 2 N -0.60 -27.16 2.86 -854.86 -2.44 -29.60 16 3 C 0.26 14.39 5.22 85.63 0.45 14.84 16 4 C -0.54 -32.32 9.39 25.60 0.24 -32.08 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.44 5.46 84.65 0.46 0.90 16 7 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 8 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 C 0.54 24.98 7.43 86.72 0.64 25.62 16 13 O -0.60 -33.87 16.31 -3.97 -0.06 -33.94 16 14 C -0.18 -6.34 5.47 -20.08 -0.11 -6.44 16 15 C -0.04 -1.22 9.59 22.51 0.22 -1.00 16 16 C -0.16 -4.10 9.97 22.33 0.22 -3.87 16 17 C 0.15 3.38 6.70 22.63 0.15 3.53 16 18 O -0.32 -6.25 10.12 -90.29 -0.91 -7.16 16 19 C 0.08 1.03 5.02 71.98 0.36 1.39 16 20 C -0.17 -1.95 6.05 -10.79 -0.07 -2.01 16 21 C -0.18 -1.65 10.18 30.62 0.31 -1.34 16 22 C -0.16 -1.18 10.25 30.62 0.31 -0.87 16 23 C -0.21 -4.08 9.01 22.33 0.20 -3.88 16 24 C -0.05 -1.34 7.42 22.51 0.17 -1.18 16 25 H 0.08 2.01 7.44 -2.39 -0.02 2.00 16 26 H 0.07 2.16 8.11 -2.39 -0.02 2.14 16 27 H 0.10 2.62 4.71 -2.39 -0.01 2.60 16 28 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 29 H 0.00 -0.01 7.36 -2.39 -0.02 -0.03 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.12 4.21 7.95 -2.91 -0.02 4.18 16 32 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.08 0.83 7.67 -2.39 -0.02 0.82 16 34 H 0.08 0.81 7.37 -2.38 -0.02 0.79 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 0.85 8.03 -2.38 -0.02 0.83 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.17 2.01 6.28 -2.91 -0.02 1.99 16 41 H 0.16 3.42 4.82 -2.91 -0.01 3.41 16 Total: -1.00 -78.09 343.95 4.61 -73.48 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.03 Total: 9.46 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 4.69 Total: -3.38 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -2.16 Total: -86.18 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.98 Total: -41.10 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -78.09 4.61 -73.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352837890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.347 kcal (2) G-P(sol) polarization free energy of solvation -78.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds