Wall clock time and date at job start Tue Mar 31 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 116.99865 * 2 1 4 4 C 1.38670 * 119.90705 * 0.02562 * 3 2 1 5 5 C 1.38173 * 120.09292 * 180.02562 * 4 3 2 6 6 C 1.38103 * 119.96421 * 0.05817 * 5 4 3 7 7 C 1.39044 * 120.15117 * 359.96862 * 6 5 4 8 8 C 1.38516 * 120.07281 * 359.93464 * 7 6 5 9 9 C 1.50585 * 121.52575 * 180.24607 * 8 7 6 10 10 C 1.52846 * 110.50315 * 339.33891 * 9 8 7 11 11 C 1.53434 * 108.84531 * 51.39866 * 10 9 8 12 12 N 1.40185 * 119.12122 * 179.77005 * 7 6 5 13 13 C 1.34778 * 120.54725 * 346.72585 * 12 7 6 14 14 O 1.21289 * 120.00165 * 353.87877 * 13 12 7 15 15 C 1.50700 * 119.99720 * 173.88514 * 13 12 7 16 16 C 1.52998 * 109.47066 * 185.44611 * 15 13 12 17 17 C 1.50700 * 109.47066 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00212 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00051 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00224 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46689 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47160 * 119.99789 * 21 19 17 24 24 H 1.48497 * 109.47090 * 239.99861 * 21 19 17 25 25 H 1.08995 * 109.47504 * 299.99906 * 1 2 3 26 26 H 1.08997 * 109.47031 * 60.00395 * 1 2 3 27 27 H 1.08999 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.95356 * 0.29998 * 4 3 2 29 29 H 1.07991 * 120.01891 * 180.08444 * 5 4 3 30 30 H 1.07997 * 119.92522 * 179.97438 * 6 5 4 31 31 H 1.09005 * 109.26696 * 219.07704 * 9 8 7 32 32 H 1.09001 * 109.27299 * 99.60910 * 9 8 7 33 33 H 1.08998 * 109.57896 * 291.59041 * 10 9 8 34 34 H 1.09006 * 109.68115 * 171.26964 * 10 9 8 35 35 H 1.08997 * 109.79617 * 177.20490 * 11 10 9 36 36 H 1.08999 * 109.84732 * 56.37556 * 11 10 9 37 37 H 1.09000 * 109.47465 * 305.44859 * 15 13 12 38 38 H 1.09000 * 109.47380 * 65.45028 * 15 13 12 39 39 H 1.09001 * 109.47699 * 300.00361 * 16 15 13 40 40 H 1.09003 * 109.47161 * 60.00118 * 16 15 13 41 41 H 0.96999 * 120.00322 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2888 2.3726 0.0005 5 6 1.9120 3.6058 0.0000 6 6 3.2910 3.6817 -0.0023 7 6 4.0544 2.5196 -0.0034 8 6 3.4337 1.2814 -0.0008 9 6 4.2283 0.0022 0.0036 10 6 5.6493 0.2530 -0.5005 11 6 6.2534 1.4256 0.2832 12 7 5.4525 2.6218 -0.0106 13 6 6.0520 3.7979 -0.2829 14 8 5.3878 4.7505 -0.6326 15 6 7.5476 3.9290 -0.1529 16 6 7.9539 5.3858 -0.3846 17 6 9.4494 5.5171 -0.2540 18 1 10.0502 4.6484 -0.0287 19 6 10.0508 6.7464 -0.4221 20 7 9.3194 7.8042 -0.6969 21 14 11.9046 6.9093 -0.2595 22 1 12.4929 5.5815 0.0504 23 1 12.4709 7.4154 -1.5357 24 1 12.2238 7.8605 0.8353 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2104 2.3135 0.0059 29 1 1.3212 4.5098 0.0018 30 1 3.7775 4.6459 -0.0031 31 1 3.7404 -0.7266 -0.6437 32 1 4.2710 -0.3913 1.0192 33 1 5.6223 0.4986 -1.5621 34 1 6.2560 -0.6396 -0.3475 35 1 7.2851 1.5862 -0.0296 36 1 6.2207 1.2127 1.3517 37 1 7.8539 3.6210 0.8468 38 1 8.0338 3.2942 -0.8936 39 1 7.6476 5.6939 -1.3843 40 1 7.4677 6.0208 0.3561 41 1 9.7425 8.6690 -0.8155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353327228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:22 Heat of formation + Delta-G solvation = -46.991533 kcal Electronic energy + Delta-G solvation = -22840.384503 eV Core-core repulsion = 19492.502315 eV Total energy + Delta-G solvation = -3347.882188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04443 -39.53745 -37.52187 -36.09408 -33.58428 -33.26046 -31.34294 -30.49480 -29.22151 -27.40007 -26.17701 -25.32826 -23.25597 -22.81404 -21.40800 -20.15356 -18.95671 -17.80576 -17.09958 -16.34534 -16.11723 -15.91023 -15.75514 -15.39295 -15.11819 -14.44458 -14.30373 -13.95457 -13.52631 -13.29783 -13.20720 -12.99744 -12.78119 -12.26801 -12.21471 -11.97632 -11.75805 -11.41940 -11.21568 -11.11378 -11.05992 -10.96617 -10.63603 -10.60292 -10.03386 -9.84948 -9.64566 -9.15913 -8.91989 -8.36392 -8.14596 -7.69139 -5.99753 -4.04410 1.35226 1.56134 2.85650 3.00626 3.30797 3.32787 3.38297 3.41232 3.89304 4.43749 4.57580 4.72460 4.83313 4.89648 4.94808 4.95579 5.10467 5.16368 5.22926 5.28679 5.35606 5.44351 5.56088 5.58719 5.63936 5.71967 5.82676 6.04979 6.07382 6.10287 6.13906 6.34109 6.39705 6.46173 6.72573 6.80079 7.10620 7.40068 7.56743 7.69595 7.78954 8.01434 8.31810 8.51755 9.03405 9.59535 11.11212 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034086 B = 0.003391 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.249750 B = 8254.245461 C = 8995.666911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.141 3.859 4 C -0.237 4.237 5 C -0.064 4.064 6 C -0.188 4.188 7 C 0.203 3.797 8 C -0.158 4.158 9 C -0.063 4.063 10 C -0.136 4.136 11 C 0.101 3.899 12 N -0.563 5.563 13 C 0.513 3.487 14 O -0.505 6.505 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.171 0.829 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.023 0.977 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.981 -17.890 2.503 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.096 3.904 4 C -0.257 4.257 5 C -0.083 4.083 6 C -0.208 4.208 7 C 0.107 3.893 8 C -0.162 4.162 9 C -0.100 4.100 10 C -0.174 4.174 11 C -0.022 4.022 12 N -0.287 5.287 13 C 0.305 3.695 14 O -0.379 6.379 15 C -0.167 4.167 16 C -0.002 4.002 17 C -0.566 4.566 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.188 0.812 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.111 -17.342 2.270 23.114 hybrid contribution 0.590 0.240 0.091 0.643 sum -14.522 -17.102 2.361 22.559 Atomic orbital electron populations 1.23003 0.78709 1.03514 1.01342 1.86008 1.21018 1.27071 1.88930 1.18476 0.90970 0.84007 0.96961 1.21067 0.99542 0.92456 1.12655 1.20863 0.94315 0.96739 0.96377 1.22223 0.93668 1.00297 1.04561 1.17495 0.82965 0.92667 0.96124 1.18593 0.90722 0.94151 1.12692 1.20131 0.93870 0.94146 1.01843 1.21892 0.96445 0.98294 1.00753 1.22015 0.95940 0.83829 1.00367 1.46115 1.03770 1.11385 1.67460 1.21876 0.92352 0.80434 0.74848 1.90480 1.65492 1.38124 1.43785 1.21958 0.87184 1.04778 1.02736 1.18942 0.95762 0.86925 0.98530 1.21216 0.92124 0.94278 1.48934 0.92482 1.25023 0.98182 0.95943 0.95207 1.70002 1.35184 0.99513 1.48034 0.86528 0.85599 0.78101 0.77694 1.19719 1.20996 1.20996 0.92769 0.92777 0.88527 0.85938 0.85691 0.81246 0.90356 0.90997 0.90948 0.89732 0.88202 0.90639 0.89847 0.89657 0.95522 0.95812 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.63 9.59 -19.43 -0.19 -3.82 16 3 C 0.14 1.88 6.65 -39.16 -0.26 1.62 16 4 C -0.24 -3.00 9.03 -39.45 -0.36 -3.36 16 5 C -0.06 -0.90 10.04 -39.65 -0.40 -1.30 16 6 C -0.19 -3.19 8.87 -39.33 -0.35 -3.54 16 7 C 0.20 3.32 6.31 -83.63 -0.53 2.79 16 8 C -0.16 -2.24 5.77 -104.31 -0.60 -2.84 16 9 C -0.06 -0.71 5.43 -28.02 -0.15 -0.86 16 10 C -0.14 -1.39 6.11 -26.59 -0.16 -1.56 16 11 C 0.10 1.20 6.17 -3.59 -0.02 1.18 16 12 N -0.56 -9.09 2.97 -112.86 -0.34 -9.42 16 13 C 0.51 10.02 7.55 -10.98 -0.08 9.94 16 14 O -0.50 -11.53 12.65 5.55 0.07 -11.46 16 15 C -0.13 -2.51 4.06 -27.88 -0.11 -2.63 16 16 C 0.04 0.94 4.28 -27.88 -0.12 0.82 16 17 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 21 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.12 1.21 6.27 -52.49 -0.33 0.88 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.17 3.30 4.96 -53.70 -0.27 3.04 16 31 H 0.08 0.84 7.73 -51.93 -0.40 0.44 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.09 6.26 -51.93 -0.33 0.76 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.50 8.06 -51.93 -0.42 1.08 16 38 H 0.09 1.53 7.60 -51.93 -0.39 1.14 16 39 H 0.03 0.77 8.04 -51.93 -0.42 0.35 16 40 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -33.54 331.19 -8.16 -41.70 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.85 Total: -0.11 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -2.57 Total: -11.92 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.40 Total: -35.75 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.12 Total: -15.28 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.54 -8.16 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353327228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.294 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds