Wall clock time and date at job start Tue Mar 31 2020 06:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 116.99865 * 2 1 4 4 C 1.38670 * 119.90705 * 0.02562 * 3 2 1 5 5 C 1.38173 * 120.09292 * 180.02562 * 4 3 2 6 6 C 1.38103 * 119.96421 * 0.05817 * 5 4 3 7 7 C 1.39044 * 120.15117 * 359.96862 * 6 5 4 8 8 C 1.38516 * 120.07281 * 359.93464 * 7 6 5 9 9 C 1.50585 * 121.52575 * 180.24607 * 8 7 6 10 10 C 1.52846 * 110.50315 * 339.33891 * 9 8 7 11 11 C 1.53434 * 108.84531 * 51.39866 * 10 9 8 12 12 N 1.40185 * 119.12122 * 179.77005 * 7 6 5 13 13 C 1.34778 * 120.54725 * 346.72585 * 12 7 6 14 14 O 1.21289 * 120.00165 * 353.87877 * 13 12 7 15 15 C 1.50700 * 119.99720 * 173.88514 * 13 12 7 16 16 C 1.52998 * 109.47066 * 185.44611 * 15 13 12 17 17 C 1.50700 * 109.47066 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00212 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00051 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00224 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46689 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47160 * 119.99789 * 21 19 17 24 24 H 1.48497 * 109.47090 * 239.99861 * 21 19 17 25 25 H 1.08995 * 109.47504 * 299.99906 * 1 2 3 26 26 H 1.08997 * 109.47031 * 60.00395 * 1 2 3 27 27 H 1.08999 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.95356 * 0.29998 * 4 3 2 29 29 H 1.07991 * 120.01891 * 180.08444 * 5 4 3 30 30 H 1.07997 * 119.92522 * 179.97438 * 6 5 4 31 31 H 1.09005 * 109.26696 * 219.07704 * 9 8 7 32 32 H 1.09001 * 109.27299 * 99.60910 * 9 8 7 33 33 H 1.08998 * 109.57896 * 291.59041 * 10 9 8 34 34 H 1.09006 * 109.68115 * 171.26964 * 10 9 8 35 35 H 1.08997 * 109.79617 * 177.20490 * 11 10 9 36 36 H 1.08999 * 109.84732 * 56.37556 * 11 10 9 37 37 H 1.09000 * 109.47465 * 305.44859 * 15 13 12 38 38 H 1.09000 * 109.47380 * 65.45028 * 15 13 12 39 39 H 1.09001 * 109.47699 * 300.00361 * 16 15 13 40 40 H 1.09003 * 109.47161 * 60.00118 * 16 15 13 41 41 H 0.96999 * 120.00322 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2888 2.3726 0.0005 5 6 1.9120 3.6058 0.0000 6 6 3.2910 3.6817 -0.0023 7 6 4.0544 2.5196 -0.0034 8 6 3.4337 1.2814 -0.0008 9 6 4.2283 0.0022 0.0036 10 6 5.6493 0.2530 -0.5005 11 6 6.2534 1.4256 0.2832 12 7 5.4525 2.6218 -0.0106 13 6 6.0520 3.7979 -0.2829 14 8 5.3878 4.7505 -0.6326 15 6 7.5476 3.9290 -0.1529 16 6 7.9539 5.3858 -0.3846 17 6 9.4494 5.5171 -0.2540 18 1 10.0502 4.6484 -0.0287 19 6 10.0508 6.7464 -0.4221 20 7 9.3194 7.8042 -0.6969 21 14 11.9046 6.9093 -0.2595 22 1 12.4929 5.5815 0.0504 23 1 12.4709 7.4154 -1.5357 24 1 12.2238 7.8605 0.8353 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2104 2.3135 0.0059 29 1 1.3212 4.5098 0.0018 30 1 3.7775 4.6459 -0.0031 31 1 3.7404 -0.7266 -0.6437 32 1 4.2710 -0.3913 1.0192 33 1 5.6223 0.4986 -1.5621 34 1 6.2560 -0.6396 -0.3475 35 1 7.2851 1.5862 -0.0296 36 1 6.2207 1.2127 1.3517 37 1 7.8539 3.6210 0.8468 38 1 8.0338 3.2942 -0.8936 39 1 7.6476 5.6939 -1.3843 40 1 7.4677 6.0208 0.3561 41 1 9.7425 8.6690 -0.8155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353327228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:21 Heat of formation + Delta-G solvation = -67.549483 kcal Electronic energy + Delta-G solvation = -22841.275963 eV Core-core repulsion = 19492.502315 eV Total energy + Delta-G solvation = -3348.773647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.23194 -40.65316 -38.71494 -37.15740 -35.62779 -34.38927 -33.16707 -31.58874 -30.39377 -28.13510 -27.88016 -26.58094 -24.52628 -24.07336 -22.88153 -21.40196 -20.10120 -19.13080 -18.55750 -17.83155 -17.34473 -17.02201 -16.77989 -16.64391 -16.46506 -16.18706 -15.38208 -15.14877 -14.73490 -14.44916 -14.35091 -14.23883 -14.07702 -13.78008 -13.54988 -13.25936 -12.91183 -12.80772 -12.69158 -12.44771 -12.24002 -12.07472 -12.02884 -11.91968 -11.59457 -11.54428 -11.26988 -10.97068 -10.58007 -10.41468 -9.18911 -8.87237 -8.18408 -6.32315 0.21345 0.43688 1.43012 1.44279 1.57272 1.57499 1.69963 2.41730 2.45469 2.77154 3.15209 3.53063 3.74254 3.81006 3.99913 4.08754 4.14961 4.27335 4.34387 4.39072 4.43608 4.46928 4.50012 4.52979 4.60882 4.71045 4.77106 4.79135 4.98383 5.04432 5.15280 5.23647 5.30063 5.32723 5.38259 5.48745 5.57099 5.59509 5.83215 5.96345 6.15749 6.27501 6.45184 6.85591 7.05914 7.38056 8.94556 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034086 B = 0.003391 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.249750 B = 8254.245461 C = 8995.666911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.322 6.322 3 C 0.141 3.859 4 C -0.230 4.230 5 C -0.069 4.069 6 C -0.221 4.221 7 C 0.178 3.822 8 C -0.162 4.162 9 C -0.061 4.061 10 C -0.128 4.128 11 C 0.088 3.912 12 N -0.557 5.557 13 C 0.508 3.492 14 O -0.554 6.554 15 C -0.112 4.112 16 C 0.043 3.957 17 C -0.540 4.540 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.974 3.026 22 H -0.251 1.251 23 H -0.282 1.282 24 H -0.281 1.281 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.123 0.877 28 H 0.155 0.845 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.111 0.889 39 H -0.016 1.016 40 H -0.017 1.017 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.734 -21.532 3.223 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.235 6.235 3 C 0.095 3.905 4 C -0.249 4.249 5 C -0.088 4.088 6 C -0.241 4.241 7 C 0.083 3.917 8 C -0.166 4.166 9 C -0.098 4.098 10 C -0.166 4.166 11 C -0.032 4.032 12 N -0.280 5.280 13 C 0.301 3.699 14 O -0.432 6.432 15 C -0.151 4.151 16 C 0.005 3.995 17 C -0.578 4.578 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.798 3.202 22 H -0.174 1.174 23 H -0.208 1.208 24 H -0.207 1.207 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.141 0.859 28 H 0.172 0.828 29 H 0.159 0.841 30 H 0.153 0.847 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.003 0.997 40 H 0.001 0.999 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.883 -21.062 3.007 25.964 hybrid contribution 0.310 1.295 -0.123 1.338 sum -14.573 -19.767 2.884 24.727 Atomic orbital electron populations 1.23359 0.76437 1.05650 1.02184 1.86011 1.23291 1.25813 1.88432 1.18623 0.91008 0.84980 0.95919 1.21386 1.01163 0.91505 1.10840 1.21053 0.93293 0.98387 0.96038 1.22070 0.95266 0.99496 1.07319 1.17646 0.82897 0.93390 0.97794 1.18933 0.91735 0.94388 1.11544 1.20222 0.93994 0.92627 1.02973 1.21898 0.96379 0.98824 0.99470 1.22440 0.96091 0.82706 1.01955 1.46039 1.04336 1.11366 1.66237 1.21758 0.92158 0.81124 0.74891 1.90493 1.66272 1.40154 1.46266 1.21703 0.87917 1.00622 1.04891 1.18708 0.95397 0.90596 0.94809 1.21712 0.92828 0.95091 1.48167 0.90324 1.26137 1.04088 0.95561 0.94677 1.70183 1.37848 1.00291 1.49482 0.85272 0.78457 0.78955 0.77554 1.17395 1.20755 1.20723 0.91771 0.92009 0.85913 0.82765 0.84136 0.84696 0.89501 0.89476 0.92287 0.86021 0.87011 0.88809 0.87309 0.87142 0.99730 0.99880 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -6.40 9.59 -92.44 -0.89 -7.29 16 3 C 0.14 3.48 6.65 22.54 0.15 3.63 16 4 C -0.23 -5.44 9.03 22.36 0.20 -5.24 16 5 C -0.07 -1.98 10.04 22.22 0.22 -1.75 16 6 C -0.22 -8.01 8.87 22.43 0.20 -7.81 16 7 C 0.18 5.92 6.31 38.06 0.24 6.16 16 8 C -0.16 -4.41 5.77 -19.66 -0.11 -4.52 16 9 C -0.06 -1.20 5.43 29.76 0.16 -1.04 16 10 C -0.13 -2.25 6.11 30.69 0.19 -2.06 16 11 C 0.09 1.91 6.17 86.44 0.53 2.45 16 12 N -0.56 -18.12 2.97 -629.38 -1.87 -19.99 16 13 C 0.51 20.85 7.55 87.66 0.66 21.51 16 14 O -0.55 -27.66 12.65 -3.06 -0.04 -27.70 16 15 C -0.11 -4.50 4.06 29.85 0.12 -4.37 16 16 C 0.04 2.36 4.28 29.85 0.13 2.48 16 17 C -0.54 -30.38 9.11 25.60 0.23 -30.14 16 18 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 19 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 20 N -0.94 -59.43 13.29 21.45 0.28 -59.14 16 21 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 22 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 H 0.06 0.62 7.65 -2.39 -0.02 0.60 16 26 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 27 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.15 2.57 6.27 -2.91 -0.02 2.56 16 29 H 0.14 3.39 8.06 -2.92 -0.02 3.37 16 30 H 0.14 5.87 4.96 -22.05 -0.11 5.76 16 31 H 0.09 1.58 7.73 -2.38 -0.02 1.56 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.11 2.13 6.26 -2.39 -0.01 2.12 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.11 3.79 8.06 -2.39 -0.02 3.77 16 38 H 0.11 3.85 7.60 -2.39 -0.02 3.83 16 39 H -0.02 -0.99 8.04 -2.39 -0.02 -1.01 16 40 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -78.52 331.19 4.95 -73.57 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.93 Total: 13.89 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 4.50 Total: -19.36 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.58 Total: -79.13 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.92 Total: -34.99 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -78.52 4.95 -73.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353327228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.016 kcal (2) G-P(sol) polarization free energy of solvation -78.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds