Wall clock time and date at job start Tue Mar 31 2020 07:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42899 * 113.99781 * 2 1 4 4 C 1.53494 * 114.20304 * 149.99914 * 3 2 1 5 5 N 1.47064 * 87.98353 * 139.85230 * 4 3 2 6 6 C 1.34781 * 136.06043 * 152.84599 * 5 4 3 7 7 O 1.21286 * 119.99390 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00301 * 180.02562 * 6 5 4 9 9 C 1.53007 * 109.47280 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46572 * 306.02010 * 9 8 6 11 11 C 1.50698 * 109.46932 * 66.02063 * 9 8 6 12 12 H 1.07996 * 119.99684 * 35.31222 * 11 9 8 13 13 C 1.37879 * 119.99780 * 215.58289 * 11 9 8 14 14 N 1.31514 * 119.99902 * 186.53177 * 13 11 9 15 15 Si 1.86798 * 120.00203 * 6.52463 * 13 11 9 16 16 H 1.48499 * 109.46812 * 92.16640 * 15 13 11 17 17 H 1.48498 * 109.47405 * 212.16952 * 15 13 11 18 18 H 1.48504 * 109.47159 * 332.17332 * 15 13 11 19 19 C 1.50699 * 109.47244 * 186.02743 * 9 8 6 20 20 C 1.38237 * 119.99589 * 296.59103 * 19 9 8 21 21 C 1.38240 * 119.99759 * 179.79235 * 20 19 9 22 22 C 1.38231 * 119.99963 * 0.43804 * 21 20 19 23 23 C 1.38235 * 120.00212 * 359.80901 * 22 21 20 24 24 C 1.38225 * 120.00278 * 116.86251 * 19 9 8 25 25 C 1.47068 * 87.88459 * 333.09968 * 5 4 3 26 26 H 1.09004 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46665 * 299.99832 * 1 2 3 28 28 H 1.08997 * 109.47056 * 59.99655 * 1 2 3 29 29 H 1.09003 * 113.28164 * 16.93552 * 3 2 1 30 30 H 1.08998 * 113.46690 * 25.07412 * 4 3 2 31 31 H 1.08996 * 113.52477 * 254.64024 * 4 3 2 32 32 H 1.09004 * 109.47173 * 59.99648 * 8 6 5 33 33 H 1.09002 * 109.47283 * 299.99754 * 8 6 5 34 34 H 0.96999 * 120.00042 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.00202 * 359.97438 * 20 19 9 36 36 H 1.08001 * 119.99765 * 180.27360 * 21 20 19 37 37 H 1.08004 * 119.99942 * 179.84150 * 22 21 20 38 38 H 1.07991 * 120.00239 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.00322 * 359.97421 * 24 19 9 40 40 H 1.09008 * 113.46480 * 141.67831 * 25 5 4 41 41 H 1.08990 * 113.47163 * 272.11418 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3738 1.3873 0.7000 5 7 3.8131 2.2901 -0.3745 6 6 4.7152 3.2837 -0.4992 7 8 5.3982 3.6052 0.4502 8 6 4.8745 3.9959 -1.8176 9 6 5.9548 5.0717 -1.6890 10 1 5.7171 5.7269 -0.8509 11 6 7.2907 4.4161 -1.4509 12 1 7.5215 3.4734 -1.9246 13 6 8.2159 5.0171 -0.6240 14 7 9.4263 4.5142 -0.5164 15 14 7.7503 6.5456 0.3435 16 1 7.2473 6.1492 1.6834 17 1 8.9438 7.4151 0.5001 18 1 6.6892 7.2876 -0.3837 19 6 6.0115 5.8811 -2.9589 20 6 6.3674 5.2751 -4.1494 21 6 6.4153 6.0166 -5.3151 22 6 6.1161 7.3659 -5.2887 23 6 5.7652 7.9729 -4.0974 24 6 5.7132 7.2305 -2.9324 25 6 2.8302 1.6361 -1.2515 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.3104 2.0886 0.2917 30 1 3.9108 0.4388 0.7167 31 1 3.3325 1.8652 1.6787 32 1 3.9291 4.4622 -2.0952 33 1 5.1651 3.2787 -2.5853 34 1 10.0774 4.9372 0.0650 35 1 6.6052 4.2218 -4.1692 36 1 6.6890 5.5422 -6.2459 37 1 6.1560 7.9457 -6.1990 38 1 5.5310 9.0270 -4.0769 39 1 5.4390 7.7048 -2.0017 40 1 2.3265 2.3256 -1.9291 41 1 3.2209 0.7548 -1.7600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355994417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:00 Heat of formation + Delta-G solvation = -9.896679 kcal Electronic energy + Delta-G solvation = -22805.765105 eV Core-core repulsion = 19459.491470 eV Total energy + Delta-G solvation = -3346.273634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.25343 -38.75206 -37.87398 -36.30323 -34.06559 -31.68410 -30.21595 -29.83351 -28.46218 -26.73657 -26.16776 -25.30958 -22.69823 -21.94675 -21.56409 -19.63197 -18.46444 -17.26946 -16.94533 -16.70915 -15.95162 -15.75201 -15.23445 -14.86007 -14.47081 -14.41708 -14.07216 -13.69169 -13.40285 -12.86720 -12.72935 -12.58236 -12.52705 -12.38632 -12.17259 -11.85951 -11.82372 -11.44402 -11.25634 -11.04937 -10.78377 -10.53659 -10.36545 -9.87154 -9.71804 -9.55301 -9.20042 -8.99710 -8.42229 -8.34831 -8.20669 -7.81815 -5.98144 -3.95063 2.10182 2.14996 3.00057 3.30171 3.43103 3.48121 3.53560 3.78442 4.22920 4.52780 4.58648 4.69448 4.85881 5.08618 5.11067 5.27527 5.38862 5.40842 5.42756 5.52387 5.56377 5.57666 5.69188 5.70394 5.78869 5.92860 6.00900 6.04333 6.18381 6.24730 6.33115 6.62045 6.70690 6.84419 6.93075 7.01593 7.14785 7.27814 7.58159 7.72672 7.82804 8.12566 8.53190 8.89068 9.01420 9.67058 11.14756 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.004920 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.347776 B = 5689.467335 C = 6887.771602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.046 3.954 4 C 0.104 3.896 5 N -0.656 5.656 6 C 0.549 3.451 7 O -0.495 6.495 8 C -0.108 4.108 9 C 0.052 3.948 10 H 0.053 0.947 11 C -0.490 4.490 12 H 0.071 0.929 13 C 0.086 3.914 14 N -0.898 5.898 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.295 1.295 18 H -0.260 1.260 19 C -0.037 4.037 20 C -0.102 4.102 21 C -0.127 4.127 22 C -0.150 4.150 23 C -0.126 4.126 24 C -0.137 4.137 25 C 0.087 3.913 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.262 0.738 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.848 -3.533 -4.142 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C -0.013 4.013 4 C -0.019 4.019 5 N -0.398 5.398 6 C 0.339 3.661 7 O -0.366 6.366 8 C -0.148 4.148 9 C 0.033 3.967 10 H 0.071 0.929 11 C -0.527 4.527 12 H 0.089 0.911 13 C -0.117 4.117 14 N -0.535 5.535 15 Si 0.703 3.297 16 H -0.200 1.200 17 H -0.222 1.222 18 H -0.185 1.185 19 C -0.038 4.038 20 C -0.120 4.120 21 C -0.145 4.145 22 C -0.168 4.168 23 C -0.144 4.144 24 C -0.155 4.155 25 C -0.038 4.038 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.096 0.904 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.963 -3.297 -3.531 17.637 hybrid contribution -0.144 0.912 0.477 1.039 sum -17.107 -2.385 -3.053 17.540 Atomic orbital electron populations 1.22825 0.80813 1.02866 1.00158 1.87933 1.19939 1.26592 1.94450 1.23999 0.94257 0.85611 0.97424 1.23010 0.91029 0.94349 0.93557 1.49538 1.40216 1.35109 1.14952 1.20505 0.76390 0.77792 0.91368 1.90756 1.41262 1.63811 1.40780 1.21642 1.00192 0.99343 0.93658 1.18211 0.95172 0.92345 0.90966 0.92929 1.20590 0.96438 1.07383 1.28288 0.91099 1.24896 0.94383 0.96767 0.95636 1.69902 1.04026 1.41193 1.38382 0.86887 0.77804 0.83381 0.81617 1.20049 1.22167 1.18470 1.20705 0.92868 0.93927 0.96252 1.20965 0.98967 1.00216 0.91845 1.21050 1.01132 0.94327 0.97996 1.20860 1.03432 0.95135 0.97348 1.20966 1.01387 0.98892 0.93159 1.21152 1.02207 0.94584 0.97589 1.23323 0.88288 0.97257 0.94891 0.89546 0.93860 0.93786 0.88103 0.89513 0.90317 0.91397 0.89714 0.92827 0.86313 0.87186 0.87423 0.87369 0.86996 0.90437 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.30 16 2 O -0.37 -3.83 10.76 -35.23 -0.38 -4.21 16 3 C 0.05 0.48 4.65 -26.36 -0.12 0.36 16 4 C 0.10 1.41 8.46 -8.51 -0.07 1.34 16 5 N -0.66 -10.57 3.69 -185.44 -0.68 -11.25 16 6 C 0.55 11.33 7.83 -10.99 -0.09 11.25 16 7 O -0.50 -12.68 15.80 5.55 0.09 -12.59 16 8 C -0.11 -2.09 4.75 -27.88 -0.13 -2.22 16 9 C 0.05 1.22 1.30 -92.92 -0.12 1.10 16 10 H 0.05 1.30 4.53 -51.93 -0.24 1.06 16 11 C -0.49 -13.68 7.00 -34.44 -0.24 -13.92 16 12 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 13 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 14 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 15 Si 0.87 23.11 27.28 -169.99 -4.64 18.47 16 16 H -0.27 -7.45 7.11 56.52 0.40 -7.05 16 17 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 18 H -0.26 -6.33 4.96 56.52 0.28 -6.05 16 19 C -0.04 -0.78 4.77 -104.63 -0.50 -1.28 16 20 C -0.10 -2.00 8.87 -39.58 -0.35 -2.35 16 21 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 22 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 23 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 24 C -0.14 -2.72 9.30 -39.58 -0.37 -3.08 16 25 C 0.09 1.00 8.26 -8.65 -0.07 0.93 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.10 0.91 7.88 -51.93 -0.41 0.50 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.55 7.81 -51.93 -0.41 1.14 16 34 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 35 H 0.12 2.31 7.78 -52.49 -0.41 1.90 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.11 2.18 6.92 -52.49 -0.36 1.82 16 40 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -34.81 342.90 -8.08 -42.90 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.15 Total: 1.22 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.26 Total: -12.11 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.09 Total: -38.85 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.29 Total: -16.80 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.64 Total: 18.47 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.81 -8.08 -42.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355994417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.999 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds