Wall clock time and date at job start Tue Mar 31 2020 06:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42899 * 113.99781 * 2 1 4 4 C 1.53494 * 114.20304 * 149.99914 * 3 2 1 5 5 N 1.47064 * 87.98353 * 139.85230 * 4 3 2 6 6 C 1.34781 * 136.06043 * 152.84599 * 5 4 3 7 7 O 1.21286 * 119.99390 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00301 * 180.02562 * 6 5 4 9 9 C 1.53007 * 109.47280 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46572 * 306.02010 * 9 8 6 11 11 C 1.50698 * 109.46932 * 66.02063 * 9 8 6 12 12 H 1.07996 * 119.99684 * 35.31222 * 11 9 8 13 13 C 1.37879 * 119.99780 * 215.58289 * 11 9 8 14 14 N 1.31514 * 119.99902 * 186.53177 * 13 11 9 15 15 Si 1.86798 * 120.00203 * 6.52463 * 13 11 9 16 16 H 1.48499 * 109.46812 * 92.16640 * 15 13 11 17 17 H 1.48498 * 109.47405 * 212.16952 * 15 13 11 18 18 H 1.48504 * 109.47159 * 332.17332 * 15 13 11 19 19 C 1.50699 * 109.47244 * 186.02743 * 9 8 6 20 20 C 1.38237 * 119.99589 * 296.59103 * 19 9 8 21 21 C 1.38240 * 119.99759 * 179.79235 * 20 19 9 22 22 C 1.38231 * 119.99963 * 0.43804 * 21 20 19 23 23 C 1.38235 * 120.00212 * 359.80901 * 22 21 20 24 24 C 1.38225 * 120.00278 * 116.86251 * 19 9 8 25 25 C 1.47068 * 87.88459 * 333.09968 * 5 4 3 26 26 H 1.09004 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46665 * 299.99832 * 1 2 3 28 28 H 1.08997 * 109.47056 * 59.99655 * 1 2 3 29 29 H 1.09003 * 113.28164 * 16.93552 * 3 2 1 30 30 H 1.08998 * 113.46690 * 25.07412 * 4 3 2 31 31 H 1.08996 * 113.52477 * 254.64024 * 4 3 2 32 32 H 1.09004 * 109.47173 * 59.99648 * 8 6 5 33 33 H 1.09002 * 109.47283 * 299.99754 * 8 6 5 34 34 H 0.96999 * 120.00042 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.00202 * 359.97438 * 20 19 9 36 36 H 1.08001 * 119.99765 * 180.27360 * 21 20 19 37 37 H 1.08004 * 119.99942 * 179.84150 * 22 21 20 38 38 H 1.07991 * 120.00239 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.00322 * 359.97421 * 24 19 9 40 40 H 1.09008 * 113.46480 * 141.67831 * 25 5 4 41 41 H 1.08990 * 113.47163 * 272.11418 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3738 1.3873 0.7000 5 7 3.8131 2.2901 -0.3745 6 6 4.7152 3.2837 -0.4992 7 8 5.3982 3.6052 0.4502 8 6 4.8745 3.9959 -1.8176 9 6 5.9548 5.0717 -1.6890 10 1 5.7171 5.7269 -0.8509 11 6 7.2907 4.4161 -1.4509 12 1 7.5215 3.4734 -1.9246 13 6 8.2159 5.0171 -0.6240 14 7 9.4263 4.5142 -0.5164 15 14 7.7503 6.5456 0.3435 16 1 7.2473 6.1492 1.6834 17 1 8.9438 7.4151 0.5001 18 1 6.6892 7.2876 -0.3837 19 6 6.0115 5.8811 -2.9589 20 6 6.3674 5.2751 -4.1494 21 6 6.4153 6.0166 -5.3151 22 6 6.1161 7.3659 -5.2887 23 6 5.7652 7.9729 -4.0974 24 6 5.7132 7.2305 -2.9324 25 6 2.8302 1.6361 -1.2515 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.3104 2.0886 0.2917 30 1 3.9108 0.4388 0.7167 31 1 3.3325 1.8652 1.6787 32 1 3.9291 4.4622 -2.0952 33 1 5.1651 3.2787 -2.5853 34 1 10.0774 4.9372 0.0650 35 1 6.6052 4.2218 -4.1692 36 1 6.6890 5.5422 -6.2459 37 1 6.1560 7.9457 -6.1990 38 1 5.5310 9.0270 -4.0769 39 1 5.4390 7.7048 -2.0017 40 1 2.3265 2.3256 -1.9291 41 1 3.2209 0.7548 -1.7600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355994417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:59 Heat of formation + Delta-G solvation = -33.530124 kcal Electronic energy + Delta-G solvation = -22806.789928 eV Core-core repulsion = 19459.491470 eV Total energy + Delta-G solvation = -3347.298457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44855 -40.18151 -39.21677 -37.33727 -35.85315 -33.76082 -31.61863 -31.22529 -29.80816 -27.87028 -27.21226 -26.72381 -24.31739 -23.32651 -22.71694 -21.18855 -19.82382 -19.05827 -18.29525 -17.96022 -17.30754 -16.97157 -16.45910 -16.17748 -15.95618 -15.63524 -15.41756 -15.28658 -14.78135 -14.56765 -14.18537 -14.05801 -13.85092 -13.61945 -13.51225 -13.26896 -13.05997 -12.86244 -12.76180 -12.26126 -12.08329 -12.07374 -11.92532 -11.82527 -11.44636 -11.10354 -10.75397 -10.59009 -10.46841 -9.70194 -9.61970 -9.31072 -8.25290 -6.21770 0.68646 0.73166 1.27695 1.37063 1.39207 1.72885 1.86640 2.39106 2.91138 3.06925 3.21896 3.29009 3.66731 3.91879 4.11615 4.21165 4.28536 4.31329 4.41104 4.46517 4.49253 4.53157 4.56941 4.60525 4.63238 4.68162 4.76065 4.84097 4.88506 4.90018 4.95912 5.13277 5.20255 5.37761 5.40421 5.66270 5.77218 5.82540 6.02058 6.21362 6.31674 6.35788 6.75720 6.78674 7.34854 7.42393 8.91889 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.004920 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.347776 B = 5689.467335 C = 6887.771602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.388 6.388 3 C 0.073 3.927 4 C 0.088 3.912 5 N -0.661 5.661 6 C 0.542 3.458 7 O -0.562 6.562 8 C -0.101 4.101 9 C 0.054 3.946 10 H 0.036 0.964 11 C -0.468 4.468 12 H 0.032 0.968 13 C 0.023 3.977 14 N -0.953 5.953 15 Si 0.924 3.076 16 H -0.291 1.291 17 H -0.293 1.293 18 H -0.228 1.228 19 C -0.062 4.062 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.139 4.139 23 C -0.123 4.123 24 C -0.153 4.153 25 C 0.085 3.915 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.259 0.741 35 H 0.107 0.893 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.089 -2.170 -6.597 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.306 6.306 3 C 0.014 3.986 4 C -0.035 4.035 5 N -0.400 5.400 6 C 0.333 3.667 7 O -0.439 6.439 8 C -0.141 4.141 9 C 0.034 3.966 10 H 0.055 0.945 11 C -0.506 4.506 12 H 0.051 0.949 13 C -0.173 4.173 14 N -0.594 5.594 15 Si 0.750 3.250 16 H -0.218 1.218 17 H -0.220 1.220 18 H -0.151 1.151 19 C -0.062 4.062 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.157 4.157 23 C -0.141 4.141 24 C -0.172 4.172 25 C -0.037 4.037 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.159 0.841 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.296 -1.965 -6.034 21.265 hybrid contribution 0.708 0.337 1.115 1.363 sum -19.589 -1.629 -4.919 20.262 Atomic orbital electron populations 1.23073 0.78726 1.04192 1.01372 1.87914 1.22164 1.26144 1.94377 1.23711 0.93048 0.86545 0.95308 1.23268 0.93434 0.93513 0.93257 1.49455 1.39176 1.33964 1.17385 1.20702 0.76351 0.78672 0.90964 1.90721 1.44234 1.66278 1.42650 1.21525 1.00673 0.98559 0.93319 1.18080 0.93524 0.93111 0.91840 0.94549 1.20809 0.98197 1.05592 1.26004 0.94943 1.25631 0.94467 0.99935 0.97265 1.70040 1.05382 1.43443 1.40546 0.86097 0.78270 0.80868 0.79718 1.21806 1.22026 1.15084 1.20432 0.95667 0.94559 0.95577 1.20999 0.99983 1.00171 0.92644 1.21392 0.99880 0.94908 0.98042 1.21345 1.00946 0.94866 0.98560 1.21342 1.00009 1.00358 0.92348 1.21259 1.03014 0.94043 0.98839 1.23604 0.87075 0.97566 0.95472 0.88299 0.92858 0.92329 0.85886 0.89851 0.90909 0.87681 0.89035 0.93222 0.87468 0.84294 0.83487 0.84102 0.87231 0.87703 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.85 113.37 1.23 1.46 16 2 O -0.39 -7.04 10.76 -148.98 -1.60 -8.64 16 3 C 0.07 1.36 4.65 30.84 0.14 1.50 16 4 C 0.09 2.38 8.46 83.18 0.70 3.08 16 5 N -0.66 -21.02 3.69 -859.47 -3.17 -24.20 16 6 C 0.54 22.81 7.83 87.65 0.69 23.49 16 7 O -0.56 -30.17 15.80 -3.05 -0.05 -30.22 16 8 C -0.10 -3.87 4.75 29.85 0.14 -3.73 16 9 C 0.05 2.53 1.30 -12.28 -0.02 2.51 16 10 H 0.04 1.82 4.53 -2.39 -0.01 1.80 16 11 C -0.47 -27.33 7.00 25.60 0.18 -27.15 16 12 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 13 C 0.02 1.45 5.47 84.66 0.46 1.91 16 14 N -0.95 -63.57 13.96 21.45 0.30 -63.27 16 15 Si 0.92 49.33 27.28 68.60 1.87 51.20 16 16 H -0.29 -16.18 7.11 99.48 0.71 -15.48 16 17 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 18 H -0.23 -10.81 4.96 99.48 0.49 -10.32 16 19 C -0.06 -2.56 4.77 -19.87 -0.09 -2.66 16 20 C -0.12 -4.57 8.87 22.27 0.20 -4.37 16 21 C -0.12 -3.84 10.05 22.27 0.22 -3.61 16 22 C -0.14 -3.87 10.05 22.27 0.22 -3.65 16 23 C -0.12 -3.71 10.05 22.27 0.22 -3.48 16 24 C -0.15 -5.72 9.30 22.27 0.21 -5.51 16 25 C 0.09 1.77 8.26 83.09 0.69 2.46 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.12 1.79 7.88 -2.39 -0.02 1.77 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 33 H 0.09 3.35 7.81 -2.39 -0.02 3.33 16 34 H 0.26 16.45 8.31 -92.71 -0.77 15.68 16 35 H 0.11 4.22 7.78 -2.91 -0.02 4.20 16 36 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.14 3.31 8.06 -2.92 -0.02 3.29 16 39 H 0.11 4.05 6.92 -2.91 -0.02 4.03 16 40 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -81.50 342.90 3.34 -78.16 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.80 Total: 14.71 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 5.20 Total: -17.74 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -2.87 Total: -87.46 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -1.65 Total: -38.86 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 1.87 Total: 51.20 kcal Total: -81.50 3.34 -78.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355994417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.632 kcal (2) G-P(sol) polarization free energy of solvation -81.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds