Wall clock time and date at job start Tue Mar 31 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42903 * 109.47367 * 2 1 4 4 C 1.35959 * 116.99820 * 179.97438 * 3 2 1 5 5 C 1.38304 * 120.06937 * 0.02595 * 4 3 2 6 6 C 1.38697 * 120.62021 * 179.97438 * 5 4 3 7 7 C 1.37736 * 120.32538 * 359.97438 * 6 5 4 8 8 C 1.39506 * 119.70003 * 359.97438 * 7 6 5 9 9 C 1.46784 * 134.29725 * 180.02562 * 8 7 6 10 10 C 1.34008 * 106.19289 * 180.02562 * 9 8 7 11 11 C 1.50699 * 124.93544 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47358 * 19.99533 * 11 10 9 13 13 C 1.53006 * 109.46866 * 259.99938 * 11 10 9 14 14 N 1.46898 * 109.47309 * 140.00123 * 11 10 9 15 15 C 1.46900 * 110.99922 * 205.00024 * 14 11 10 16 16 C 1.50704 * 109.46782 * 179.97438 * 15 14 11 17 17 H 1.08001 * 120.00110 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99603 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00325 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99523 * 179.97438 * 18 16 15 21 21 H 1.48488 * 109.47359 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46871 * 120.00431 * 20 18 16 23 23 H 1.48503 * 109.46975 * 239.99964 * 20 18 16 24 24 O 1.34417 * 110.12848 * 0.24349 * 10 9 8 25 25 C 1.34895 * 110.88017 * 359.58873 * 24 10 9 26 26 H 1.09002 * 109.47612 * 300.00598 * 1 2 3 27 27 H 1.09005 * 109.46993 * 60.00134 * 1 2 3 28 28 H 1.08997 * 109.47800 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47667 * 239.99294 * 2 1 3 30 30 H 1.09010 * 109.46769 * 119.99458 * 2 1 3 31 31 H 1.07993 * 119.68840 * 359.97438 * 5 4 3 32 32 H 1.07998 * 119.83383 * 179.97438 * 6 5 4 33 33 H 1.07996 * 120.14718 * 180.02562 * 7 6 5 34 34 H 1.08001 * 126.90664 * 0.02562 * 9 8 7 35 35 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 36 36 H 1.08993 * 109.46955 * 300.00219 * 13 11 10 37 37 H 1.09000 * 109.47050 * 60.00048 * 13 11 10 38 38 H 1.00899 * 110.99606 * 328.95615 * 14 11 10 39 39 H 1.08996 * 109.46839 * 299.99510 * 15 14 11 40 40 H 1.09003 * 109.47177 * 60.00055 * 15 14 11 41 41 H 0.97005 * 120.00200 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5253 0.0005 5 6 4.1979 0.4295 0.0005 6 6 5.5747 0.5979 0.0005 7 6 6.1206 1.8624 0.0000 8 6 5.2820 2.9773 -0.0010 9 6 5.5054 4.4280 -0.0022 10 6 4.2904 4.9933 -0.0023 11 6 4.0290 6.4774 -0.0028 12 1 4.9170 7.0026 -0.3546 13 6 3.6941 6.9367 1.4177 14 7 2.8991 6.7753 -0.8930 15 6 2.9704 8.1558 -1.3902 16 6 1.7980 8.4237 -2.2984 17 1 1.0727 7.6461 -2.4876 18 6 1.6519 9.6612 -2.8885 19 7 2.5353 10.6078 -2.6586 20 14 0.1989 9.9931 -4.0148 21 1 -0.6430 8.7736 -4.1091 22 1 -0.6085 11.1114 -3.4646 23 1 0.6938 10.3581 -5.3666 24 8 3.3387 4.0441 0.0041 25 6 3.8883 2.8122 -0.0004 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 1.8932 -0.5138 0.8901 31 1 3.7809 -0.5667 0.0005 32 1 6.2217 -0.2668 0.0009 33 1 7.1930 1.9902 -0.0004 34 1 6.4577 4.9376 -0.0030 35 1 3.5054 8.0103 1.4174 36 1 2.8061 6.4115 1.7694 37 1 4.5325 6.7157 2.0782 38 1 2.8574 6.1175 -1.6569 39 1 2.9435 8.8471 -0.5480 40 1 3.8984 8.2947 -1.9449 41 1 2.4326 11.4784 -3.0741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357380302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:12 Heat of formation + Delta-G solvation = -14.511693 kcal Electronic energy + Delta-G solvation = -22291.368512 eV Core-core repulsion = 18944.894755 eV Total energy + Delta-G solvation = -3346.473756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.36394 -39.64295 -37.08452 -36.11513 -33.03235 -32.38529 -31.75269 -30.30613 -29.31739 -28.37930 -26.21709 -24.26050 -23.28150 -22.54629 -21.54906 -21.06162 -20.12768 -18.09940 -17.33149 -16.83913 -16.50379 -15.84275 -15.71576 -15.29071 -14.97086 -14.63289 -14.20456 -13.59603 -13.43293 -13.37552 -13.02945 -12.82775 -12.77735 -12.35743 -12.25258 -11.94800 -11.73116 -11.59602 -11.56353 -11.33656 -11.26952 -11.01647 -10.95663 -10.61839 -10.57481 -9.92620 -9.67353 -9.19321 -8.50052 -8.44632 -7.81205 -7.40820 -6.04362 -4.05849 0.94141 1.31513 2.45632 2.77838 3.01334 3.31853 3.39048 3.45146 3.65154 4.36675 4.46024 4.62208 4.69084 4.75813 4.86699 4.96544 5.01807 5.15677 5.22076 5.28280 5.31489 5.32692 5.51462 5.57696 5.66083 5.70739 5.75570 5.84564 6.03987 6.10309 6.20662 6.29044 6.36852 6.42169 6.61341 6.65740 7.00698 7.17830 7.34835 7.46121 7.76836 8.08368 8.31231 8.53587 9.03170 9.59122 11.06855 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.003686 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.284621 B = 7594.302862 C = 8738.950745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.309 6.309 4 C 0.152 3.848 5 C -0.202 4.202 6 C -0.098 4.098 7 C -0.116 4.116 8 C -0.084 4.084 9 C -0.230 4.230 10 C 0.071 3.929 11 C 0.153 3.847 12 H 0.072 0.928 13 C -0.136 4.136 14 N -0.680 5.680 15 C 0.192 3.808 16 C -0.513 4.513 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.285 1.285 24 O -0.164 6.164 25 C 0.020 3.980 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.159 0.841 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.335 0.665 39 H 0.033 0.967 40 H -0.011 1.011 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.134 -21.715 7.235 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.223 6.223 4 C 0.106 3.894 5 C -0.221 4.221 6 C -0.116 4.116 7 C -0.134 4.134 8 C -0.085 4.085 9 C -0.250 4.250 10 C 0.022 3.978 11 C 0.042 3.958 12 H 0.089 0.911 13 C -0.194 4.194 14 N -0.312 5.312 15 C 0.066 3.934 16 C -0.552 4.552 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.211 1.211 24 O -0.064 6.064 25 C -0.028 4.028 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.176 0.824 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.153 0.847 39 H 0.051 0.949 40 H 0.007 0.993 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.272 -21.175 7.709 22.936 hybrid contribution 0.263 -0.017 -1.294 1.321 sum 4.536 -21.192 6.415 22.602 Atomic orbital electron populations 1.21780 0.92579 1.02707 1.03979 1.22806 0.96130 0.81854 1.01260 1.86212 1.18280 1.29282 1.88521 1.17681 0.83000 0.89148 0.99549 1.20848 0.93986 0.96745 1.10543 1.20705 0.93966 0.96902 1.00065 1.20384 0.99268 0.90451 1.03295 1.19743 0.91791 0.94114 1.02892 1.22190 0.98387 0.90909 1.13483 1.22938 0.86126 0.91345 0.97411 1.20379 0.95605 0.82669 0.97116 0.91085 1.21808 1.01300 1.02614 0.93706 1.60820 1.39629 1.07540 1.23222 1.19675 0.96077 0.82895 0.94730 1.21203 1.09188 0.97961 1.26839 0.91793 1.24973 0.96620 0.96046 0.96867 1.69963 1.35440 1.03985 1.44368 0.86419 0.82399 0.78297 0.80189 1.19609 1.20952 1.21090 1.84142 1.35265 1.12046 1.74913 1.18777 0.91200 0.84159 1.08630 0.91366 0.91246 0.90409 0.91962 0.92028 0.84665 0.85330 0.85490 0.82363 0.91011 0.91799 0.92998 0.84716 0.94910 0.99308 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.15 0.38 -0.85 16 2 C 0.05 0.51 5.46 37.15 0.20 0.71 16 3 O -0.31 -4.42 10.14 -19.61 -0.20 -4.62 16 4 C 0.15 2.21 6.70 -39.15 -0.26 1.95 16 5 C -0.20 -2.27 9.03 -39.39 -0.36 -2.62 16 6 C -0.10 -1.02 10.03 -39.60 -0.40 -1.42 16 7 C -0.12 -1.39 10.10 -39.29 -0.40 -1.78 16 8 C -0.08 -1.27 6.39 -105.18 -0.67 -1.94 16 9 C -0.23 -3.48 10.99 -37.62 -0.41 -3.89 16 10 C 0.07 1.23 5.73 -35.80 -0.21 1.03 16 11 C 0.15 2.79 3.05 -68.86 -0.21 2.58 16 12 H 0.07 1.26 7.78 -51.93 -0.40 0.86 16 13 C -0.14 -2.28 9.40 37.16 0.35 -1.93 16 14 N -0.68 -15.10 6.27 -109.22 -0.69 -15.78 16 15 C 0.19 5.02 5.24 -4.97 -0.03 5.00 16 16 C -0.51 -14.70 9.32 -34.44 -0.32 -15.02 16 17 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 20 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 O -0.16 -3.09 10.56 3.75 0.04 -3.05 16 25 C 0.02 0.34 7.35 -38.38 -0.28 0.06 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 30 H 0.06 0.47 7.66 -51.92 -0.40 0.07 16 31 H 0.14 1.11 6.26 -52.49 -0.33 0.78 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.07 1.25 7.45 -51.93 -0.39 0.87 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.34 7.47 8.34 -39.29 -0.33 7.14 16 39 H 0.03 0.90 7.44 -51.93 -0.39 0.52 16 40 H -0.01 -0.30 8.06 -51.93 -0.42 -0.71 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 347.28 15.07 5.23 5.23 Total: -1.00 -32.22 347.28 -8.57 -40.79 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.97 Total: 3.18 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.71 Total: -16.61 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.05 Total: -41.81 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.16 Total: -7.67 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.22 -8.57 -40.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357380302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.281 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds