Wall clock time and date at job start Tue Mar 31 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42903 * 109.47367 * 2 1 4 4 C 1.35959 * 116.99820 * 179.97438 * 3 2 1 5 5 C 1.38304 * 120.06937 * 0.02595 * 4 3 2 6 6 C 1.38697 * 120.62021 * 179.97438 * 5 4 3 7 7 C 1.37736 * 120.32538 * 359.97438 * 6 5 4 8 8 C 1.39506 * 119.70003 * 359.97438 * 7 6 5 9 9 C 1.46784 * 134.29725 * 180.02562 * 8 7 6 10 10 C 1.34008 * 106.19289 * 180.02562 * 9 8 7 11 11 C 1.50699 * 124.93544 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47358 * 19.99533 * 11 10 9 13 13 C 1.53006 * 109.46866 * 259.99938 * 11 10 9 14 14 N 1.46898 * 109.47309 * 140.00123 * 11 10 9 15 15 C 1.46900 * 110.99922 * 205.00024 * 14 11 10 16 16 C 1.50704 * 109.46782 * 179.97438 * 15 14 11 17 17 H 1.08001 * 120.00110 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99603 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00325 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99523 * 179.97438 * 18 16 15 21 21 H 1.48488 * 109.47359 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46871 * 120.00431 * 20 18 16 23 23 H 1.48503 * 109.46975 * 239.99964 * 20 18 16 24 24 O 1.34417 * 110.12848 * 0.24349 * 10 9 8 25 25 C 1.34895 * 110.88017 * 359.58873 * 24 10 9 26 26 H 1.09002 * 109.47612 * 300.00598 * 1 2 3 27 27 H 1.09005 * 109.46993 * 60.00134 * 1 2 3 28 28 H 1.08997 * 109.47800 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47667 * 239.99294 * 2 1 3 30 30 H 1.09010 * 109.46769 * 119.99458 * 2 1 3 31 31 H 1.07993 * 119.68840 * 359.97438 * 5 4 3 32 32 H 1.07998 * 119.83383 * 179.97438 * 6 5 4 33 33 H 1.07996 * 120.14718 * 180.02562 * 7 6 5 34 34 H 1.08001 * 126.90664 * 0.02562 * 9 8 7 35 35 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 36 36 H 1.08993 * 109.46955 * 300.00219 * 13 11 10 37 37 H 1.09000 * 109.47050 * 60.00048 * 13 11 10 38 38 H 1.00899 * 110.99606 * 328.95615 * 14 11 10 39 39 H 1.08996 * 109.46839 * 299.99510 * 15 14 11 40 40 H 1.09003 * 109.47177 * 60.00055 * 15 14 11 41 41 H 0.97005 * 120.00200 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5253 0.0005 5 6 4.1979 0.4295 0.0005 6 6 5.5747 0.5979 0.0005 7 6 6.1206 1.8624 0.0000 8 6 5.2820 2.9773 -0.0010 9 6 5.5054 4.4280 -0.0022 10 6 4.2904 4.9933 -0.0023 11 6 4.0290 6.4774 -0.0028 12 1 4.9170 7.0026 -0.3546 13 6 3.6941 6.9367 1.4177 14 7 2.8991 6.7753 -0.8930 15 6 2.9704 8.1558 -1.3902 16 6 1.7980 8.4237 -2.2984 17 1 1.0727 7.6461 -2.4876 18 6 1.6519 9.6612 -2.8885 19 7 2.5353 10.6078 -2.6586 20 14 0.1989 9.9931 -4.0148 21 1 -0.6430 8.7736 -4.1091 22 1 -0.6085 11.1114 -3.4646 23 1 0.6938 10.3581 -5.3666 24 8 3.3387 4.0441 0.0041 25 6 3.8883 2.8122 -0.0004 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 1.8932 -0.5138 0.8901 31 1 3.7809 -0.5667 0.0005 32 1 6.2217 -0.2668 0.0009 33 1 7.1930 1.9902 -0.0004 34 1 6.4577 4.9376 -0.0030 35 1 3.5054 8.0103 1.4174 36 1 2.8061 6.4115 1.7694 37 1 4.5325 6.7157 2.0782 38 1 2.8574 6.1175 -1.6569 39 1 2.9435 8.8471 -0.5480 40 1 3.8984 8.2947 -1.9449 41 1 2.4326 11.4784 -3.0741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357380302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:11 Heat of formation + Delta-G solvation = -35.152938 kcal Electronic energy + Delta-G solvation = -22292.263583 eV Core-core repulsion = 18944.894755 eV Total energy + Delta-G solvation = -3347.368828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.51255 -40.59339 -38.19635 -37.62287 -34.99389 -33.58546 -32.64129 -31.88208 -30.28316 -29.55619 -28.19893 -25.38553 -24.45230 -23.78331 -23.02035 -22.24869 -21.40969 -19.17625 -18.69866 -18.35237 -17.52532 -17.34249 -16.76078 -16.69127 -16.35063 -15.97675 -15.70069 -15.06452 -14.68945 -14.38543 -14.24717 -14.07501 -13.94422 -13.61279 -13.40244 -13.24522 -13.11751 -12.98780 -12.83155 -12.75549 -12.49844 -12.32826 -12.29755 -12.09197 -11.92118 -11.78232 -11.34139 -10.71963 -10.68368 -9.54775 -9.25676 -8.81494 -8.24982 -6.35462 -0.09449 0.33486 1.29430 1.39449 1.40093 1.54298 1.66188 2.16249 2.38532 2.68987 3.08455 3.17493 3.47683 3.77844 3.85457 4.04776 4.06062 4.11110 4.18769 4.25672 4.28091 4.33282 4.38691 4.45994 4.69663 4.76519 4.79722 4.87526 4.91409 5.05476 5.11656 5.13195 5.22098 5.23626 5.26386 5.36863 5.45871 5.57810 5.71477 5.94096 6.03123 6.34288 6.44855 6.59757 6.81933 7.34849 8.86672 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.003686 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.284621 B = 7594.302862 C = 8738.950745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.045 3.955 3 O -0.343 6.343 4 C 0.126 3.874 5 C -0.187 4.187 6 C -0.088 4.088 7 C -0.117 4.117 8 C -0.103 4.103 9 C -0.212 4.212 10 C 0.039 3.961 11 C 0.153 3.847 12 H 0.077 0.923 13 C -0.129 4.129 14 N -0.684 5.684 15 C 0.210 3.790 16 C -0.539 4.539 17 H 0.058 0.942 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.971 3.029 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.275 1.275 24 O -0.198 6.198 25 C -0.019 4.019 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.156 0.844 34 H 0.184 0.816 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.332 0.668 39 H 0.013 0.987 40 H -0.031 1.031 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -24.511 7.127 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.258 6.258 4 C 0.080 3.920 5 C -0.205 4.205 6 C -0.105 4.105 7 C -0.135 4.135 8 C -0.104 4.104 9 C -0.231 4.231 10 C -0.009 4.009 11 C 0.043 3.957 12 H 0.094 0.906 13 C -0.187 4.187 14 N -0.315 5.315 15 C 0.082 3.918 16 C -0.577 4.577 17 H 0.076 0.924 18 C -0.193 4.193 19 N -0.570 5.570 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.200 1.200 24 O -0.100 6.100 25 C -0.066 4.066 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.127 0.873 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.187 0.813 32 H 0.190 0.810 33 H 0.173 0.827 34 H 0.201 0.799 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.149 0.851 39 H 0.031 0.969 40 H -0.014 1.014 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.267 -23.990 7.616 25.715 hybrid contribution 0.016 0.657 -1.215 1.381 sum 5.283 -23.333 6.401 24.765 Atomic orbital electron populations 1.21834 0.92096 1.04326 1.02718 1.23157 0.96632 0.80176 1.02975 1.86178 1.18554 1.32253 1.88806 1.18077 0.83729 0.89276 1.00877 1.21350 0.94233 0.97167 1.07780 1.21262 0.94079 0.97719 0.97485 1.20826 1.00443 0.90060 1.02157 1.20031 0.91600 0.94720 1.04024 1.22538 0.98386 0.91444 1.10738 1.22664 0.86920 0.90549 1.00815 1.20367 0.94262 0.84323 0.96709 0.90587 1.21754 1.02108 1.01359 0.93485 1.60688 1.42288 1.05455 1.23112 1.19306 0.94446 0.84703 0.93304 1.21524 1.09950 0.98353 1.27889 0.92414 1.25877 0.99510 0.95627 0.98248 1.70069 1.37149 1.04492 1.45248 0.85311 0.78710 0.78246 0.78192 1.19215 1.20063 1.20027 1.84052 1.36507 1.13260 1.76155 1.19434 0.92552 0.84193 1.10387 0.92443 0.92700 0.87279 0.90264 0.89993 0.81273 0.80980 0.82677 0.79878 0.92362 0.92967 0.89825 0.85074 0.96888 1.01378 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.28 71.98 0.74 -1.59 16 2 C 0.04 0.76 5.46 71.98 0.39 1.15 16 3 O -0.34 -9.92 10.14 -93.08 -0.94 -10.86 16 4 C 0.13 3.60 6.70 22.55 0.15 3.75 16 5 C -0.19 -3.60 9.03 22.40 0.20 -3.40 16 6 C -0.09 -1.45 10.03 22.26 0.22 -1.22 16 7 C -0.12 -2.43 10.10 22.46 0.23 -2.20 16 8 C -0.10 -2.99 6.39 -20.22 -0.13 -3.12 16 9 C -0.21 -6.32 10.99 23.54 0.26 -6.07 16 10 C 0.04 1.40 5.73 24.72 0.14 1.54 16 11 C 0.15 5.85 3.05 44.17 0.13 5.98 16 12 H 0.08 2.80 7.78 -2.39 -0.02 2.78 16 13 C -0.13 -4.48 9.40 71.98 0.68 -3.80 16 14 N -0.68 -32.12 6.27 -499.45 -3.13 -35.25 16 15 C 0.21 11.51 5.24 85.56 0.45 11.95 16 16 C -0.54 -31.89 9.32 25.60 0.24 -31.65 16 17 H 0.06 3.41 7.81 -2.91 -0.02 3.38 16 18 C 0.01 0.35 5.46 84.66 0.46 0.81 16 19 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 20 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 O -0.20 -7.89 10.56 -9.49 -0.10 -7.99 16 25 C -0.02 -0.64 7.35 23.05 0.17 -0.47 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.05 7.66 -2.39 -0.02 1.03 16 30 H 0.08 1.03 7.66 -2.38 -0.02 1.02 16 31 H 0.17 1.99 6.26 -2.91 -0.02 1.97 16 32 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 34 H 0.18 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.06 2.13 7.45 -2.39 -0.02 2.12 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.33 15.76 8.34 -89.69 -0.75 15.01 16 39 H 0.01 0.76 7.44 -2.39 -0.02 0.74 16 40 H -0.03 -1.81 8.06 -2.39 -0.02 -1.83 16 41 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -73.38 347.28 2.75 -70.63 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.28 Total: 20.48 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 4.34 Total: -28.32 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -2.85 Total: -91.36 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -1.04 Total: -18.85 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -73.38 2.75 -70.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357380302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.473 kcal (2) G-P(sol) polarization free energy of solvation -73.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds