Wall clock time and date at job start Tue Mar 31 2020 06:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37093 * 120.00052 * 2 1 4 4 H 1.07999 * 120.00264 * 204.39987 * 3 2 1 5 5 C 1.38956 * 119.99727 * 24.38954 * 3 2 1 6 6 N 1.31409 * 120.00316 * 12.64327 * 5 3 2 7 7 Si 1.86803 * 119.99510 * 192.64110 * 5 3 2 8 8 H 1.48503 * 109.46982 * 90.00206 * 7 5 3 9 9 H 1.48496 * 109.46985 * 210.00055 * 7 5 3 10 10 H 1.48503 * 109.47384 * 330.00421 * 7 5 3 11 11 C 1.34774 * 119.99683 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99566 * 179.97438 * 11 2 1 13 13 C 1.50701 * 120.00535 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.47372 * 179.97438 * 13 11 2 15 15 C 1.52995 * 109.47304 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47325 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46964 * 179.97438 * 16 15 14 18 18 O 1.21251 * 120.00451 * 0.02562 * 17 16 15 19 19 C 1.47172 * 119.99413 * 180.02562 * 17 16 15 20 20 C 1.39861 * 120.16355 * 179.97438 * 19 17 16 21 21 C 1.37887 * 119.81626 * 179.97438 * 20 19 17 22 22 C 1.38402 * 120.18065 * 359.97438 * 21 20 19 23 23 C 1.38406 * 120.34400 * 0.04133 * 22 21 20 24 24 C 1.37888 * 120.17543 * 359.95885 * 23 22 21 25 25 H 1.09001 * 109.47397 * 265.86417 * 1 2 3 26 26 H 1.08998 * 109.47049 * 25.86494 * 1 2 3 27 27 H 1.09004 * 109.46642 * 145.86730 * 1 2 3 28 28 H 0.96999 * 119.99624 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.46847 * 59.99297 * 13 11 2 30 30 H 1.09001 * 109.46401 * 299.99321 * 13 11 2 31 31 H 1.09003 * 109.47365 * 59.99409 * 14 13 11 32 32 H 1.09006 * 109.46633 * 299.99555 * 14 13 11 33 33 H 1.09003 * 109.47257 * 59.99508 * 15 14 13 34 34 H 1.09001 * 109.47214 * 300.00191 * 15 14 13 35 35 H 1.08997 * 109.46632 * 59.99903 * 16 15 14 36 36 H 1.08997 * 109.47005 * 300.00224 * 16 15 14 37 37 H 1.07989 * 120.09136 * 359.70783 * 20 19 17 38 38 H 1.08004 * 119.91194 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.83000 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.91341 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.08954 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2291 -0.3864 5 6 1.5487 2.3369 0.4969 6 7 0.4345 2.2492 1.1880 7 14 2.3238 4.0073 0.1826 8 1 1.7870 4.5719 -1.0817 9 1 2.0034 4.9213 1.3082 10 1 3.7969 3.8564 0.0711 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4724 0.0005 14 6 2.3796 -3.6353 0.0005 15 6 1.6147 -4.9603 0.0012 16 6 2.6089 -6.1232 0.0005 17 6 1.8554 -7.4283 0.0018 18 8 0.6429 -7.4283 0.0026 19 6 2.5913 -8.7028 0.0020 20 6 1.8956 -9.9160 0.0038 21 6 2.5923 -11.1059 0.0034 22 6 3.9763 -11.1018 0.0009 23 6 4.6720 -9.9053 -0.0005 24 6 3.9898 -8.7069 -0.0002 25 1 -0.3634 -0.0741 1.0250 26 1 -0.3633 0.9247 -0.4483 27 1 -0.3633 -0.8507 -0.5767 28 1 0.0147 3.0517 1.5352 29 1 0.7590 -2.5302 -0.8896 30 1 0.7586 -2.5298 0.8904 31 1 3.0064 -3.5775 0.8905 32 1 3.0062 -3.5775 -0.8896 33 1 0.9877 -5.0183 -0.8886 34 1 0.9883 -5.0178 0.8914 35 1 3.2362 -6.0653 0.8900 36 1 3.2349 -6.0655 -0.8899 37 1 0.8157 -9.9209 0.0097 38 1 2.0566 -12.0437 0.0052 39 1 4.5163 -12.0370 0.0011 40 1 5.7519 -9.9102 -0.0021 41 1 4.5341 -7.7741 -0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357522497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:52 Heat of formation + Delta-G solvation = -58.627392 kcal Electronic energy + Delta-G solvation = -21399.090430 eV Core-core repulsion = 18050.703674 eV Total energy + Delta-G solvation = -3348.386757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27854 -38.55524 -38.32764 -35.16467 -34.34937 -32.10175 -31.56740 -31.31513 -30.09887 -26.57339 -25.71723 -24.32039 -23.33314 -22.61785 -20.96494 -19.82679 -18.57358 -17.54880 -16.79294 -16.05741 -15.94372 -15.76232 -15.73005 -14.85502 -14.65969 -14.43966 -14.29497 -13.94473 -13.84937 -13.72290 -12.92426 -12.67945 -12.44476 -12.04869 -11.94350 -11.67397 -11.46647 -11.43511 -11.32350 -11.07726 -10.95727 -10.87813 -10.67944 -10.31374 -10.28040 -10.12635 -9.77901 -9.37255 -9.32185 -8.95801 -8.29688 -7.59513 -6.26952 -3.83129 0.36875 1.00134 2.20395 3.19476 3.27584 3.33298 3.47835 3.77007 3.99090 4.18984 4.44648 4.56383 4.67267 4.82937 4.88159 5.03046 5.06031 5.06570 5.17345 5.23451 5.45111 5.55714 5.61392 5.62395 5.71838 5.84470 5.95819 6.04862 6.05797 6.09101 6.13712 6.24423 6.25744 6.50340 6.51000 6.64598 6.77101 6.91763 7.25236 7.37032 7.61490 8.21336 8.55564 9.25440 9.50120 10.07194 10.78194 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.046506 B = 0.002269 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.924527 B =12338.905010 C =12845.713928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.451 5.451 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.028 3.972 6 N -0.884 5.884 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.447 3.553 12 O -0.593 6.593 13 C -0.130 4.130 14 C -0.098 4.098 15 C -0.111 4.111 16 C -0.166 4.166 17 C 0.394 3.606 18 O -0.451 6.451 19 C -0.168 4.168 20 C -0.064 4.064 21 C -0.135 4.135 22 C -0.092 4.092 23 C -0.134 4.134 24 C -0.072 4.072 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.266 0.734 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 -23.728 -2.287 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.170 5.170 3 C -0.433 4.433 4 H 0.114 0.886 5 C -0.175 4.175 6 N -0.524 5.524 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.235 3.765 12 O -0.478 6.478 13 C -0.170 4.170 14 C -0.136 4.136 15 C -0.149 4.149 16 C -0.203 4.203 17 C 0.272 3.728 18 O -0.325 6.325 19 C -0.169 4.169 20 C -0.083 4.083 21 C -0.153 4.153 22 C -0.111 4.111 23 C -0.152 4.152 24 C -0.090 4.090 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.674 -23.552 -2.191 23.804 hybrid contribution 0.192 0.847 -0.002 0.869 sum 2.866 -22.705 -2.192 22.990 Atomic orbital electron populations 1.21458 0.81331 0.99812 1.00523 1.43616 1.05450 1.04901 1.63032 1.19643 1.00529 0.84330 1.38822 0.88565 1.25352 0.96711 1.00113 0.95297 1.69998 1.19334 1.29484 1.33552 0.85936 0.79622 0.81411 0.77778 1.20435 1.21005 1.19408 1.20188 0.88086 0.85052 0.83148 1.90491 1.14141 1.87361 1.55853 1.21525 0.98887 0.93954 1.02638 1.21269 0.97524 0.91605 1.03202 1.21467 0.97361 0.92963 1.03070 1.22073 1.00381 0.93012 1.04809 1.22658 0.88983 0.90175 0.70983 1.90517 1.16239 1.89915 1.35875 1.20676 0.94622 0.95151 1.06476 1.21475 1.00737 0.91425 0.94629 1.21173 0.94448 0.98140 1.01528 1.21439 0.94440 0.98394 0.96780 1.21191 1.00402 0.92310 1.01283 1.21560 0.93026 0.99008 0.95438 0.93108 0.90871 0.95552 0.92344 0.90698 0.90459 0.91465 0.91540 0.91534 0.91463 0.88137 0.88160 0.84947 0.85480 0.85649 0.85310 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.59 8.44 59.85 0.51 3.09 16 2 N -0.45 -11.92 3.01 -122.18 -0.37 -12.28 16 3 C -0.31 -8.73 9.24 -14.93 -0.14 -8.87 16 4 H 0.10 2.87 7.45 -52.49 -0.39 2.48 16 5 C 0.03 0.76 5.04 -17.47 -0.09 0.67 16 6 N -0.88 -24.18 10.83 55.50 0.60 -23.58 16 7 Si 0.93 21.17 29.57 -169.99 -5.03 16.14 16 8 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 C 0.45 11.11 7.63 -10.99 -0.08 11.03 16 12 O -0.59 -16.63 15.70 5.54 0.09 -16.54 16 13 C -0.13 -2.41 4.31 -27.88 -0.12 -2.53 16 14 C -0.10 -1.56 4.50 -26.73 -0.12 -1.68 16 15 C -0.11 -1.44 4.50 -26.73 -0.12 -1.56 16 16 C -0.17 -1.72 4.31 -27.88 -0.12 -1.84 16 17 C 0.39 4.53 7.12 -30.68 -0.22 4.31 16 18 O -0.45 -6.52 15.98 5.58 0.09 -6.43 16 19 C -0.17 -1.66 5.87 -105.06 -0.62 -2.28 16 20 C -0.06 -0.60 9.60 -39.10 -0.38 -0.98 16 21 C -0.13 -0.99 10.03 -39.65 -0.40 -1.39 16 22 C -0.09 -0.60 10.04 -39.46 -0.40 -1.00 16 23 C -0.13 -0.91 10.03 -39.65 -0.40 -1.31 16 24 C -0.07 -0.57 9.47 -39.11 -0.37 -0.94 16 25 H 0.05 1.19 7.83 -51.93 -0.41 0.79 16 26 H 0.07 1.77 6.80 -51.93 -0.35 1.42 16 27 H 0.03 0.50 6.61 -51.93 -0.34 0.16 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.07 1.26 7.41 -51.93 -0.38 0.88 16 30 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 31 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 36 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 37 H 0.13 1.23 7.65 -52.49 -0.40 0.83 16 38 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.14 0.84 7.05 -52.49 -0.37 0.47 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -33.63 346.50 -8.45 -42.08 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.00 Total: 0.67 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -3.06 Total: -5.28 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.23 Total: -35.86 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.18 Total: -22.97 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.63 -8.45 -42.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357522497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.552 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds