Wall clock time and date at job start Tue Mar 31 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37093 * 120.00052 * 2 1 4 4 H 1.07999 * 120.00264 * 204.39987 * 3 2 1 5 5 C 1.38956 * 119.99727 * 24.38954 * 3 2 1 6 6 N 1.31409 * 120.00316 * 12.64327 * 5 3 2 7 7 Si 1.86803 * 119.99510 * 192.64110 * 5 3 2 8 8 H 1.48503 * 109.46982 * 90.00206 * 7 5 3 9 9 H 1.48496 * 109.46985 * 210.00055 * 7 5 3 10 10 H 1.48503 * 109.47384 * 330.00421 * 7 5 3 11 11 C 1.34774 * 119.99683 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99566 * 179.97438 * 11 2 1 13 13 C 1.50701 * 120.00535 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.47372 * 179.97438 * 13 11 2 15 15 C 1.52995 * 109.47304 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47325 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46964 * 179.97438 * 16 15 14 18 18 O 1.21251 * 120.00451 * 0.02562 * 17 16 15 19 19 C 1.47172 * 119.99413 * 180.02562 * 17 16 15 20 20 C 1.39861 * 120.16355 * 179.97438 * 19 17 16 21 21 C 1.37887 * 119.81626 * 179.97438 * 20 19 17 22 22 C 1.38402 * 120.18065 * 359.97438 * 21 20 19 23 23 C 1.38406 * 120.34400 * 0.04133 * 22 21 20 24 24 C 1.37888 * 120.17543 * 359.95885 * 23 22 21 25 25 H 1.09001 * 109.47397 * 265.86417 * 1 2 3 26 26 H 1.08998 * 109.47049 * 25.86494 * 1 2 3 27 27 H 1.09004 * 109.46642 * 145.86730 * 1 2 3 28 28 H 0.96999 * 119.99624 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.46847 * 59.99297 * 13 11 2 30 30 H 1.09001 * 109.46401 * 299.99321 * 13 11 2 31 31 H 1.09003 * 109.47365 * 59.99409 * 14 13 11 32 32 H 1.09006 * 109.46633 * 299.99555 * 14 13 11 33 33 H 1.09003 * 109.47257 * 59.99508 * 15 14 13 34 34 H 1.09001 * 109.47214 * 300.00191 * 15 14 13 35 35 H 1.08997 * 109.46632 * 59.99903 * 16 15 14 36 36 H 1.08997 * 109.47005 * 300.00224 * 16 15 14 37 37 H 1.07989 * 120.09136 * 359.70783 * 20 19 17 38 38 H 1.08004 * 119.91194 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.83000 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.91341 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.08954 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2291 -0.3864 5 6 1.5487 2.3369 0.4969 6 7 0.4345 2.2492 1.1880 7 14 2.3238 4.0073 0.1826 8 1 1.7870 4.5719 -1.0817 9 1 2.0034 4.9213 1.3082 10 1 3.7969 3.8564 0.0711 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4724 0.0005 14 6 2.3796 -3.6353 0.0005 15 6 1.6147 -4.9603 0.0012 16 6 2.6089 -6.1232 0.0005 17 6 1.8554 -7.4283 0.0018 18 8 0.6429 -7.4283 0.0026 19 6 2.5913 -8.7028 0.0020 20 6 1.8956 -9.9160 0.0038 21 6 2.5923 -11.1059 0.0034 22 6 3.9763 -11.1018 0.0009 23 6 4.6720 -9.9053 -0.0005 24 6 3.9898 -8.7069 -0.0002 25 1 -0.3634 -0.0741 1.0250 26 1 -0.3633 0.9247 -0.4483 27 1 -0.3633 -0.8507 -0.5767 28 1 0.0147 3.0517 1.5352 29 1 0.7590 -2.5302 -0.8896 30 1 0.7586 -2.5298 0.8904 31 1 3.0064 -3.5775 0.8905 32 1 3.0062 -3.5775 -0.8896 33 1 0.9877 -5.0183 -0.8886 34 1 0.9883 -5.0178 0.8914 35 1 3.2362 -6.0653 0.8900 36 1 3.2349 -6.0655 -0.8899 37 1 0.8157 -9.9209 0.0097 38 1 2.0566 -12.0437 0.0052 39 1 4.5163 -12.0370 0.0011 40 1 5.7519 -9.9102 -0.0021 41 1 4.5341 -7.7741 -0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357522497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:51 Heat of formation + Delta-G solvation = -77.382684 kcal Electronic energy + Delta-G solvation = -21399.903721 eV Core-core repulsion = 18050.703674 eV Total energy + Delta-G solvation = -3349.200047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06230 -40.36535 -39.14543 -36.84444 -35.92989 -33.68134 -32.82897 -31.89426 -31.23842 -28.34722 -27.20947 -25.90054 -24.29042 -23.33380 -22.10239 -20.74312 -20.27503 -18.86706 -18.25520 -17.69990 -17.07097 -16.66036 -16.58242 -16.43628 -16.18093 -15.87696 -15.24985 -15.12068 -14.97638 -14.45045 -14.32204 -13.98566 -13.53346 -13.39473 -13.28056 -13.17664 -13.09496 -12.65613 -12.58549 -12.52084 -12.39557 -12.15193 -12.11755 -12.02301 -11.87805 -11.46641 -10.99766 -10.67715 -10.29871 -9.93699 -9.92665 -9.65866 -8.33748 -5.99080 -0.30084 0.44075 1.37494 1.40167 1.45965 1.52966 2.06178 2.28437 2.87766 2.92761 3.09060 3.18645 3.83657 3.94981 4.01036 4.05606 4.06805 4.18659 4.26418 4.40731 4.48730 4.50379 4.56028 4.61614 4.75658 4.83907 4.89087 4.91190 4.98317 5.03877 5.08948 5.13013 5.35315 5.37668 5.38877 5.44512 5.49290 5.51007 5.52124 5.97496 6.11952 6.49901 6.53622 7.17860 7.49598 8.06203 8.69607 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.046506 B = 0.002269 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.924527 B =12338.905010 C =12845.713928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.470 5.470 3 C -0.344 4.344 4 H 0.070 0.930 5 C -0.007 4.007 6 N -0.899 5.899 7 Si 0.991 3.009 8 H -0.265 1.265 9 H -0.274 1.274 10 H -0.275 1.275 11 C 0.435 3.565 12 O -0.634 6.634 13 C -0.121 4.121 14 C -0.089 4.089 15 C -0.101 4.101 16 C -0.163 4.163 17 C 0.398 3.602 18 O -0.492 6.492 19 C -0.192 4.192 20 C -0.084 4.084 21 C -0.140 4.140 22 C -0.088 4.088 23 C -0.137 4.137 24 C -0.075 4.075 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.273 0.727 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.553 -24.954 -2.528 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.189 5.189 3 C -0.473 4.473 4 H 0.088 0.912 5 C -0.208 4.208 6 N -0.538 5.538 7 Si 0.815 3.185 8 H -0.190 1.190 9 H -0.199 1.199 10 H -0.200 1.200 11 C 0.225 3.775 12 O -0.522 6.522 13 C -0.160 4.160 14 C -0.127 4.127 15 C -0.139 4.139 16 C -0.200 4.200 17 C 0.279 3.721 18 O -0.370 6.370 19 C -0.193 4.193 20 C -0.102 4.102 21 C -0.157 4.157 22 C -0.106 4.106 23 C -0.155 4.155 24 C -0.093 4.093 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.165 0.835 39 H 0.172 0.828 40 H 0.172 0.828 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.330 -24.792 -2.430 25.133 hybrid contribution 0.026 1.158 0.094 1.162 sum 3.357 -23.634 -2.336 23.986 Atomic orbital electron populations 1.21413 0.79521 1.00712 1.00479 1.43929 1.06749 1.04925 1.63264 1.19614 1.00363 0.86320 1.40954 0.91187 1.26144 0.97137 1.03123 0.94412 1.70071 1.19847 1.30716 1.33163 0.84969 0.78292 0.76914 0.78371 1.18978 1.19865 1.20021 1.21274 0.88071 0.86604 0.81509 1.90450 1.16176 1.88233 1.57298 1.21541 0.99159 0.91120 1.04228 1.21183 0.96967 0.92079 1.02439 1.21320 0.97507 0.92257 1.02800 1.22079 0.99941 0.91395 1.06544 1.22935 0.88497 0.91223 0.69461 1.90501 1.17784 1.90432 1.38303 1.20643 0.95550 0.94425 1.08686 1.21567 1.00545 0.92346 0.95734 1.21443 0.95186 0.98146 1.00971 1.21845 0.94171 0.99656 0.94939 1.21566 1.01781 0.91898 1.00261 1.21799 0.92207 1.00428 0.94831 0.94019 0.92560 0.91452 0.91752 0.88412 0.89190 0.92539 0.92054 0.91626 0.91963 0.86465 0.86251 0.86068 0.83548 0.82814 0.82793 0.83108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.55 8.44 127.77 1.08 6.62 16 2 N -0.47 -25.13 3.01 -658.87 -1.98 -27.11 16 3 C -0.34 -20.18 9.24 84.04 0.78 -19.41 16 4 H 0.07 4.37 7.45 -2.91 -0.02 4.34 16 5 C -0.01 -0.37 5.04 84.93 0.43 0.06 16 6 N -0.90 -49.06 10.83 21.66 0.23 -48.83 16 7 Si 0.99 43.41 29.57 68.60 2.03 45.44 16 8 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 C 0.44 21.84 7.63 87.66 0.67 22.51 16 12 O -0.63 -36.41 15.70 -3.08 -0.05 -36.46 16 13 C -0.12 -4.35 4.31 29.85 0.13 -4.22 16 14 C -0.09 -2.75 4.50 30.59 0.14 -2.61 16 15 C -0.10 -2.52 4.50 30.59 0.14 -2.38 16 16 C -0.16 -3.15 4.31 29.85 0.13 -3.03 16 17 C 0.40 9.01 7.12 28.03 0.20 9.21 16 18 O -0.49 -14.52 15.98 -2.94 -0.05 -14.57 16 19 C -0.19 -3.66 5.87 -20.15 -0.12 -3.78 16 20 C -0.08 -1.54 9.60 22.58 0.22 -1.32 16 21 C -0.14 -1.82 10.03 22.23 0.22 -1.59 16 22 C -0.09 -0.90 10.04 22.35 0.22 -0.67 16 23 C -0.14 -1.47 10.03 22.23 0.22 -1.25 16 24 C -0.07 -1.04 9.47 22.58 0.21 -0.82 16 25 H 0.04 1.94 7.83 -2.39 -0.02 1.92 16 26 H 0.06 2.71 6.80 -2.39 -0.02 2.70 16 27 H 0.07 2.45 6.61 -2.39 -0.02 2.44 16 28 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.10 3.09 7.41 -2.39 -0.02 3.08 16 30 H 0.09 3.04 8.11 -2.39 -0.02 3.03 16 31 H 0.06 1.87 8.10 -2.39 -0.02 1.85 16 32 H 0.06 1.96 8.10 -2.38 -0.02 1.94 16 33 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 34 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 35 H 0.12 1.90 8.09 -2.39 -0.02 1.88 16 36 H 0.12 1.88 8.09 -2.39 -0.02 1.86 16 37 H 0.12 2.38 7.65 -2.92 -0.02 2.36 16 38 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 40 H 0.15 0.85 8.06 -2.91 -0.02 0.82 16 41 H 0.15 1.50 7.05 -2.91 -0.02 1.48 16 Total: -1.00 -74.73 346.50 5.86 -68.87 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.01 Total: 15.36 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 4.67 Total: -2.70 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -1.75 Total: -75.94 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.10 Total: -51.03 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -74.73 5.86 -68.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357522497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.516 kcal (2) G-P(sol) polarization free energy of solvation -74.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds