Wall clock time and date at job start Tue Mar 31 2020 06:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 117.00224 * 2 1 4 4 C 1.38755 * 120.05492 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94123 * 179.72926 * 4 3 2 6 6 C 1.38288 * 120.06137 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.10640 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.97181 * 180.02562 * 7 6 5 9 9 H 1.08996 * 115.54900 * 154.27815 * 8 7 6 10 10 C 1.52996 * 117.49495 * 8.60475 * 8 7 6 11 11 C 1.52994 * 60.00070 * 252.51309 * 10 8 7 12 12 H 1.08999 * 117.49947 * 107.48875 * 11 10 8 13 13 C 1.50700 * 117.50291 * 252.51129 * 11 10 8 14 14 O 1.21286 * 119.99747 * 68.61610 * 13 11 10 15 15 N 1.34774 * 120.00662 * 248.62536 * 13 11 10 16 16 C 1.46506 * 119.99341 * 359.97438 * 15 13 11 17 17 C 1.46495 * 120.00512 * 179.97438 * 15 13 11 18 18 C 1.50705 * 109.47130 * 89.99708 * 17 15 13 19 19 H 1.08001 * 120.00205 * 0.02562 * 18 17 15 20 20 C 1.37876 * 119.99638 * 180.02562 * 18 17 15 21 21 N 1.31508 * 120.00515 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99559 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47494 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47312 * 119.99810 * 22 20 18 25 25 H 1.48508 * 109.46936 * 239.99971 * 22 20 18 26 26 C 1.38169 * 120.05773 * 359.97438 * 7 6 5 27 27 H 1.08998 * 109.46815 * 60.00240 * 1 2 3 28 28 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46917 * 300.00870 * 1 2 3 30 30 H 1.08000 * 120.02684 * 359.70397 * 4 3 2 31 31 H 1.08002 * 119.97134 * 180.02562 * 5 4 3 32 32 H 1.07992 * 119.94652 * 180.02562 * 6 5 4 33 33 H 1.08995 * 117.50168 * 0.02562 * 10 8 7 34 34 H 1.09003 * 117.49761 * 145.00164 * 10 8 7 35 35 H 1.09001 * 109.47047 * 90.00386 * 16 15 13 36 36 H 1.09005 * 109.46565 * 210.00318 * 16 15 13 37 37 H 1.08998 * 109.47400 * 330.00264 * 16 15 13 38 38 H 1.09000 * 109.47057 * 209.99910 * 17 15 13 39 39 H 1.08994 * 109.47148 * 329.99750 * 17 15 13 40 40 H 0.96997 * 120.00304 * 180.02562 * 21 20 18 41 41 H 1.08008 * 120.02679 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 0.0051 6 6 3.3020 3.6757 0.0118 7 6 4.0560 2.5170 0.0124 8 6 5.5609 2.5980 0.0203 9 1 6.0757 1.7374 0.4473 10 6 6.1930 3.9753 0.2305 11 6 6.2357 3.3166 -1.1497 12 1 5.5913 3.7307 -1.9251 13 6 7.5618 2.7803 -1.6241 14 8 8.0542 1.8138 -1.0815 15 7 8.2007 3.3747 -2.6512 16 6 7.6057 4.5419 -3.3069 17 6 9.4900 2.8537 -3.1120 18 6 9.2598 1.8191 -4.1834 19 1 8.2537 1.5745 -4.4907 20 6 10.3336 1.1849 -4.7714 21 7 11.5587 1.4824 -4.3969 22 14 10.0483 -0.0969 -6.0999 23 1 8.5901 -0.2480 -6.3370 24 1 10.7122 0.3356 -7.3558 25 1 10.6156 -1.3978 -5.6626 26 6 3.4311 1.2847 0.0068 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 0.2129 2.3204 -0.0058 31 1 1.3342 4.5113 0.0051 32 1 3.7923 4.6379 0.0167 33 1 5.5206 4.8227 0.3635 34 1 7.1239 4.0208 0.7959 35 1 7.9444 5.4504 -2.8088 36 1 7.9107 4.5657 -4.3531 37 1 6.5192 4.4781 -3.2466 38 1 10.0877 3.6700 -3.5175 39 1 10.0180 2.3980 -2.2745 40 1 12.3141 1.0364 -4.8108 41 1 4.0207 0.3797 0.0076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358838419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:26 Heat of formation + Delta-G solvation = -40.578240 kcal Electronic energy + Delta-G solvation = -22153.747563 eV Core-core repulsion = 18806.143476 eV Total energy + Delta-G solvation = -3347.604087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41628 -40.73304 -38.97048 -37.02512 -36.43031 -34.71930 -32.06693 -30.90531 -29.93520 -28.16921 -27.40554 -26.13438 -24.50251 -23.76272 -23.26804 -21.31206 -19.84910 -18.91147 -18.69368 -17.99276 -17.27175 -17.12383 -16.81086 -16.63457 -16.30348 -16.13156 -15.61439 -14.96980 -14.57839 -14.40558 -14.22372 -13.82154 -13.74262 -13.63963 -13.45448 -13.23179 -13.12560 -12.80054 -12.60720 -12.59457 -12.46547 -12.24720 -12.18521 -11.72464 -11.71355 -11.47031 -11.44900 -10.67540 -10.64210 -9.68097 -9.43720 -9.13148 -8.25221 -6.40372 0.28880 0.50050 1.33758 1.36649 1.48430 1.66489 2.25795 2.35884 2.41950 2.67545 3.03914 3.09145 3.53617 3.72688 3.84839 3.90647 4.01059 4.13773 4.17112 4.30240 4.39293 4.40122 4.48540 4.56003 4.69698 4.72413 4.75765 4.81617 4.91116 5.00245 5.02684 5.05255 5.13711 5.20946 5.35336 5.51264 5.53704 5.67906 5.82098 5.85819 6.03334 6.47812 6.66857 6.76449 7.25201 7.45570 8.82070 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003505 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.270276 B = 7987.365641 C = 8941.331300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.114 3.886 4 C -0.212 4.212 5 C -0.072 4.072 6 C -0.156 4.156 7 C -0.016 4.016 8 C -0.100 4.100 9 H 0.094 0.906 10 C -0.111 4.111 11 C -0.173 4.173 12 H 0.150 0.850 13 C 0.520 3.480 14 O -0.602 6.602 15 N -0.606 5.606 16 C 0.079 3.921 17 C 0.258 3.742 18 C -0.545 4.545 19 H 0.050 0.950 20 C 0.007 3.993 21 N -0.928 5.928 22 Si 0.968 3.032 23 H -0.269 1.269 24 H -0.265 1.265 25 H -0.281 1.281 26 C -0.175 4.175 27 H 0.066 0.934 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.153 0.847 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.027 0.973 39 H -0.003 1.003 40 H 0.268 0.732 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.976 8.799 8.551 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C 0.069 3.931 4 C -0.231 4.231 5 C -0.090 4.090 6 C -0.173 4.173 7 C -0.016 4.016 8 C -0.119 4.119 9 H 0.112 0.888 10 C -0.148 4.148 11 C -0.194 4.194 12 H 0.167 0.833 13 C 0.310 3.690 14 O -0.484 6.484 15 N -0.336 5.336 16 C -0.063 4.063 17 C 0.137 3.863 18 C -0.583 4.583 19 H 0.069 0.931 20 C -0.192 4.192 21 N -0.567 5.567 22 Si 0.793 3.207 23 H -0.194 1.194 24 H -0.190 1.190 25 H -0.207 1.207 26 C -0.194 4.194 27 H 0.085 0.915 28 H 0.132 0.868 29 H 0.088 0.912 30 H 0.170 0.830 31 H 0.179 0.821 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.045 0.955 39 H 0.015 0.985 40 H 0.077 0.923 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -24.442 8.098 8.758 27.197 hybrid contribution 0.585 -1.246 -0.758 1.571 sum -23.857 6.853 8.000 26.079 Atomic orbital electron populations 1.23343 0.76269 1.05430 1.02470 1.86057 1.23719 1.27335 1.88805 1.19113 0.91875 0.85241 0.96824 1.21548 1.01171 0.91836 1.08516 1.21322 0.94225 0.97951 0.95465 1.21266 0.94246 0.98137 1.03684 1.18848 0.92166 0.92998 0.97560 1.20949 0.91375 0.98191 1.01367 0.88805 1.23261 1.02904 0.95480 0.93180 1.22351 0.95007 1.07148 0.94868 0.83260 1.20388 0.86481 0.82530 0.79646 1.90624 1.69288 1.29388 1.59103 1.48106 1.22132 1.30986 1.32360 1.21966 0.99475 0.86696 0.98144 1.18781 0.80731 0.93602 0.93216 1.21733 0.92900 1.22963 1.20736 0.93131 1.25870 0.94615 0.99033 0.99641 1.70049 0.98890 1.43915 1.43887 0.85358 0.78419 0.78315 0.78651 1.19357 1.18992 1.20675 1.20321 0.92350 0.98337 1.08355 0.91531 0.86821 0.91235 0.82968 0.82096 0.82901 0.83166 0.88661 0.90736 0.91632 0.88882 0.95493 0.98511 0.92296 0.87371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.07 10.50 -92.45 -0.97 -9.04 16 3 C 0.11 2.75 6.69 22.50 0.15 2.90 16 4 C -0.21 -3.66 9.04 22.36 0.20 -3.46 16 5 C -0.07 -1.07 10.04 22.25 0.22 -0.84 16 6 C -0.16 -2.77 9.30 22.28 0.21 -2.56 16 7 C -0.02 -0.39 5.61 -19.88 -0.11 -0.50 16 8 C -0.10 -2.89 5.55 -11.54 -0.06 -2.95 16 9 H 0.09 3.33 7.67 -2.39 -0.02 3.31 16 10 C -0.11 -2.52 9.56 30.59 0.29 -2.22 16 11 C -0.17 -5.19 4.92 -11.54 -0.06 -5.25 16 12 H 0.15 3.61 6.44 -2.39 -0.02 3.60 16 13 C 0.52 23.02 7.46 87.66 0.65 23.68 16 14 O -0.60 -33.27 15.84 -3.05 -0.05 -33.32 16 15 N -0.61 -26.96 2.86 -851.12 -2.43 -29.39 16 16 C 0.08 2.43 10.27 127.77 1.31 3.74 16 17 C 0.26 14.50 5.16 85.64 0.44 14.94 16 18 C -0.54 -32.68 9.39 25.60 0.24 -32.44 16 19 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 20 C 0.01 0.44 5.46 84.66 0.46 0.90 16 21 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 22 Si 0.97 46.28 29.54 68.60 2.03 48.31 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 26 C -0.17 -4.92 9.68 22.36 0.22 -4.71 16 27 H 0.07 0.66 7.66 -2.39 -0.02 0.65 16 28 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 0.64 7.67 -2.39 -0.02 0.62 16 30 H 0.15 1.70 6.30 -2.91 -0.02 1.69 16 31 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.15 1.83 6.01 -2.91 -0.02 1.81 16 33 H 0.15 2.03 6.17 -2.39 -0.01 2.01 16 34 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 2.11 8.07 -2.38 -0.02 2.09 16 37 H 0.09 2.20 6.00 -2.39 -0.01 2.18 16 38 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 39 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 40 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 41 H 0.11 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -82.08 345.40 5.17 -76.91 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.03 Total: 11.10 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 5.28 Total: -7.44 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -2.15 Total: -86.52 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -1.02 Total: -42.35 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -82.08 5.17 -76.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358838419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.329 kcal (2) G-P(sol) polarization free energy of solvation -82.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds