Wall clock time and date at job start Tue Mar 31 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47192 * 2 1 4 4 C 1.37093 * 120.00507 * 264.46716 * 3 2 1 5 5 H 1.07996 * 120.00034 * 138.40098 * 4 3 2 6 6 C 1.38953 * 119.99827 * 318.40136 * 4 3 2 7 7 N 1.31414 * 120.00000 * 341.71754 * 6 4 3 8 8 Si 1.86801 * 120.00199 * 161.71695 * 6 4 3 9 9 H 1.48501 * 109.46639 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47106 * 119.99892 * 8 6 4 11 11 H 1.48494 * 109.47144 * 240.00207 * 8 6 4 12 12 C 1.34785 * 119.99459 * 84.46254 * 3 2 1 13 13 O 1.21288 * 119.99570 * 179.97438 * 12 3 2 14 14 C 1.50695 * 120.00226 * 0.02562 * 12 3 2 15 15 H 1.09006 * 115.56478 * 34.29585 * 14 12 3 16 16 C 1.52993 * 117.49926 * 248.60864 * 14 12 3 17 17 C 1.53000 * 60.00219 * 252.50648 * 16 14 12 18 18 H 1.08999 * 117.49921 * 107.48231 * 17 16 14 19 19 C 1.50694 * 117.50426 * 252.51024 * 17 16 14 20 20 C 1.38298 * 119.96858 * 8.60694 * 19 17 16 21 21 C 1.38244 * 120.10847 * 180.02562 * 20 19 17 22 22 C 1.38169 * 120.05727 * 359.97438 * 21 20 19 23 23 C 1.38705 * 119.94213 * 359.97438 * 22 21 20 24 24 O 1.35906 * 120.05393 * 180.02562 * 23 22 21 25 25 C 1.42901 * 116.99827 * 0.02562 * 24 23 22 26 26 C 1.38118 * 119.97466 * 188.33092 * 19 17 16 27 27 H 1.09006 * 109.46814 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46762 * 299.99369 * 1 2 3 29 29 H 1.08994 * 109.47066 * 59.99585 * 1 2 3 30 30 H 1.09003 * 109.47229 * 240.00739 * 2 1 3 31 31 H 1.08996 * 109.47588 * 120.00408 * 2 1 3 32 32 H 0.96997 * 120.00239 * 180.02562 * 7 6 4 33 33 H 1.09003 * 117.49955 * 145.02277 * 16 14 12 34 34 H 1.08996 * 117.50170 * 359.97438 * 16 14 12 35 35 H 1.07996 * 119.94156 * 359.97438 * 20 19 17 36 36 H 1.07998 * 119.96939 * 179.97438 * 21 20 19 37 37 H 1.07995 * 120.02304 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46632 * 179.97438 * 25 24 23 39 39 H 1.08994 * 109.46908 * 299.99666 * 25 24 23 40 40 H 1.09003 * 109.46780 * 60.00215 * 25 24 23 41 41 H 1.07999 * 120.03274 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3548 1.9894 -1.1817 5 1 2.0747 3.0173 -1.3588 6 6 3.0561 1.2833 -2.1514 7 7 3.7047 0.1876 -1.8261 8 14 3.0772 1.8916 -3.9175 9 1 2.2753 3.1372 -4.0215 10 1 4.4770 2.1675 -4.3293 11 1 2.4955 0.8534 -4.8055 12 6 2.1367 2.0540 1.1619 13 8 2.5415 3.1974 1.1620 14 6 1.7674 1.3854 2.4609 15 1 1.9747 0.3166 2.5154 16 6 0.5285 1.9028 3.1945 17 6 1.9243 2.2017 3.7454 18 1 2.2948 3.2225 3.6508 19 6 2.3538 1.4668 4.9889 20 6 1.5762 0.4368 5.4858 21 6 1.9671 -0.2391 6.6267 22 6 3.1365 0.1129 7.2730 23 6 3.9187 1.1449 6.7759 24 8 5.0696 1.4926 7.4095 25 6 5.4137 0.7522 8.5823 26 6 3.5265 1.8186 5.6280 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.1946 -0.3051 -2.5029 33 1 -0.0791 1.1746 3.7317 34 1 -0.0191 2.7272 2.7379 35 1 0.6616 0.1605 4.9823 36 1 1.3580 -1.0428 7.0131 37 1 3.4412 -0.4152 8.1644 38 1 6.3521 1.1301 8.9882 39 1 4.6248 0.8629 9.3263 40 1 5.5269 -0.3014 8.3267 41 1 4.1359 2.6198 5.2368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358842459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:26 Heat of formation + Delta-G solvation = -17.356483 kcal Electronic energy + Delta-G solvation = -22593.133205 eV Core-core repulsion = 19246.536089 eV Total energy + Delta-G solvation = -3346.597116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.25638 -39.07280 -37.67427 -35.70852 -34.65794 -31.97413 -31.03850 -29.78879 -29.37393 -27.43402 -25.67535 -23.52390 -22.99103 -22.38412 -22.06478 -20.24619 -18.50866 -17.74694 -16.76068 -16.30285 -16.23174 -15.81567 -15.77613 -15.06904 -14.54077 -14.32779 -13.87717 -13.57973 -13.44616 -12.97059 -12.79697 -12.77651 -12.51961 -12.04019 -11.73663 -11.62927 -11.53331 -11.47065 -11.28087 -11.05727 -10.87558 -10.70468 -10.52309 -10.36666 -10.22292 -10.02523 -9.87856 -8.88998 -8.60320 -8.36537 -8.13410 -7.37681 -6.28862 -3.97529 1.32571 1.48417 3.17607 3.18753 3.28246 3.34544 3.55754 3.87431 4.16754 4.53324 4.63822 4.75473 4.91335 4.96532 4.97864 5.04636 5.12952 5.26110 5.28027 5.30761 5.36303 5.50001 5.58076 5.83698 5.86607 5.96497 6.02708 6.07096 6.27402 6.29187 6.30077 6.41078 6.46169 6.50362 6.58957 6.74845 6.84515 6.91401 7.26001 7.37685 7.61502 8.34426 8.56395 9.23552 9.43942 10.07735 10.76407 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.003603 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.676321 B = 7768.792154 C = 8187.201287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.436 5.436 4 C -0.309 4.309 5 H 0.088 0.912 6 C 0.039 3.961 7 N -0.871 5.871 8 Si 0.917 3.083 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.489 3.511 13 O -0.580 6.580 14 C -0.151 4.151 15 H 0.115 0.885 16 C -0.151 4.151 17 C -0.100 4.100 18 H 0.125 0.875 19 C 0.000 4.000 20 C -0.158 4.158 21 C -0.079 4.079 22 C -0.219 4.219 23 C 0.127 3.873 24 O -0.318 6.318 25 C 0.029 3.971 26 C -0.142 4.142 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.266 0.734 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.719 -4.641 16.677 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.155 5.155 4 C -0.437 4.437 5 H 0.106 0.894 6 C -0.166 4.166 7 N -0.508 5.508 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.277 3.723 13 O -0.463 6.463 14 C -0.172 4.172 15 H 0.133 0.867 16 C -0.189 4.189 17 C -0.119 4.119 18 H 0.143 0.857 19 C 0.000 4.000 20 C -0.176 4.176 21 C -0.098 4.098 22 C -0.237 4.237 23 C 0.082 3.918 24 O -0.232 6.232 25 C -0.066 4.066 26 C -0.161 4.161 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.250 -4.080 16.493 17.298 hybrid contribution 0.108 -0.304 -0.656 0.731 sum -3.142 -4.383 15.837 16.730 Atomic orbital electron populations 1.22212 0.98137 1.00245 1.01665 1.21432 0.91677 0.85566 1.03173 1.43353 1.55754 1.11710 1.04637 1.19417 1.34311 0.98841 0.91153 0.89443 1.25436 0.94001 0.96568 1.00564 1.69951 1.28955 1.17901 1.33998 0.86019 0.78144 0.78984 0.82461 1.19179 1.20746 1.20645 1.19433 0.81687 0.87355 0.83806 1.90509 1.50394 1.18822 1.86619 1.22487 1.02899 0.99719 0.92081 0.86676 1.23031 0.90021 1.03388 1.02432 1.21033 1.00145 1.00369 0.90332 0.85699 1.19005 0.92848 0.94228 0.93899 1.21007 1.01193 0.97629 0.97755 1.20852 0.95441 0.98582 0.94880 1.21146 0.98269 1.00948 1.03372 1.18965 0.85956 0.94194 0.92720 1.86084 1.38143 1.58320 1.40611 1.23018 1.01247 0.96476 0.85897 1.20273 0.97917 1.02946 0.94957 0.93274 0.93504 0.92578 0.88179 0.93362 0.92350 0.88296 0.88161 0.85599 0.85932 0.85834 0.88416 0.92827 0.92743 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 10.16 37.16 0.38 -2.57 16 2 C 0.11 2.31 5.41 -4.04 -0.02 2.29 16 3 N -0.44 -11.21 2.50 -114.82 -0.29 -11.49 16 4 C -0.31 -8.70 8.83 -14.93 -0.13 -8.83 16 5 H 0.09 2.57 7.83 -52.49 -0.41 2.16 16 6 C 0.04 1.04 4.94 -17.47 -0.09 0.95 16 7 N -0.87 -23.91 11.66 55.50 0.65 -23.26 16 8 Si 0.92 20.84 29.59 -169.99 -5.03 15.81 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.49 12.22 7.37 -10.98 -0.08 12.14 16 13 O -0.58 -16.53 16.17 5.55 0.09 -16.44 16 14 C -0.15 -2.88 4.44 -91.78 -0.41 -3.29 16 15 H 0.12 2.10 6.52 -51.93 -0.34 1.76 16 16 C -0.15 -2.34 9.28 -26.73 -0.25 -2.59 16 17 C -0.10 -1.71 5.55 -91.77 -0.51 -2.22 16 18 H 0.13 2.33 7.67 -51.93 -0.40 1.93 16 19 C 0.00 0.01 5.61 -104.65 -0.59 -0.58 16 20 C -0.16 -2.06 9.30 -39.56 -0.37 -2.42 16 21 C -0.08 -0.91 10.04 -39.60 -0.40 -1.31 16 22 C -0.22 -2.57 9.04 -39.43 -0.36 -2.93 16 23 C 0.13 1.75 6.69 -39.22 -0.26 1.49 16 24 O -0.32 -4.12 10.50 -19.44 -0.20 -4.32 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 C -0.14 -2.18 9.68 -39.43 -0.38 -2.57 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.78 7.39 -51.93 -0.38 0.40 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.10 2.41 5.81 -51.93 -0.30 2.11 16 31 H 0.05 0.98 6.25 -51.93 -0.32 0.65 16 32 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.10 1.23 6.17 -51.93 -0.32 0.91 16 34 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.13 1.44 6.01 -52.49 -0.32 1.13 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 40 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 41 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -32.58 340.15 -7.72 -40.30 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.59 Total: 5.48 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.47 Total: -11.19 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.36 Total: -34.75 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.11 Total: -20.76 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.58 -7.72 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358842459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.940 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds