Wall clock time and date at job start Tue Mar 31 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47192 * 2 1 4 4 C 1.37093 * 120.00507 * 264.46716 * 3 2 1 5 5 H 1.07996 * 120.00034 * 138.40098 * 4 3 2 6 6 C 1.38953 * 119.99827 * 318.40136 * 4 3 2 7 7 N 1.31414 * 120.00000 * 341.71754 * 6 4 3 8 8 Si 1.86801 * 120.00199 * 161.71695 * 6 4 3 9 9 H 1.48501 * 109.46639 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47106 * 119.99892 * 8 6 4 11 11 H 1.48494 * 109.47144 * 240.00207 * 8 6 4 12 12 C 1.34785 * 119.99459 * 84.46254 * 3 2 1 13 13 O 1.21288 * 119.99570 * 179.97438 * 12 3 2 14 14 C 1.50695 * 120.00226 * 0.02562 * 12 3 2 15 15 H 1.09006 * 115.56478 * 34.29585 * 14 12 3 16 16 C 1.52993 * 117.49926 * 248.60864 * 14 12 3 17 17 C 1.53000 * 60.00219 * 252.50648 * 16 14 12 18 18 H 1.08999 * 117.49921 * 107.48231 * 17 16 14 19 19 C 1.50694 * 117.50426 * 252.51024 * 17 16 14 20 20 C 1.38298 * 119.96858 * 8.60694 * 19 17 16 21 21 C 1.38244 * 120.10847 * 180.02562 * 20 19 17 22 22 C 1.38169 * 120.05727 * 359.97438 * 21 20 19 23 23 C 1.38705 * 119.94213 * 359.97438 * 22 21 20 24 24 O 1.35906 * 120.05393 * 180.02562 * 23 22 21 25 25 C 1.42901 * 116.99827 * 0.02562 * 24 23 22 26 26 C 1.38118 * 119.97466 * 188.33092 * 19 17 16 27 27 H 1.09006 * 109.46814 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46762 * 299.99369 * 1 2 3 29 29 H 1.08994 * 109.47066 * 59.99585 * 1 2 3 30 30 H 1.09003 * 109.47229 * 240.00739 * 2 1 3 31 31 H 1.08996 * 109.47588 * 120.00408 * 2 1 3 32 32 H 0.96997 * 120.00239 * 180.02562 * 7 6 4 33 33 H 1.09003 * 117.49955 * 145.02277 * 16 14 12 34 34 H 1.08996 * 117.50170 * 359.97438 * 16 14 12 35 35 H 1.07996 * 119.94156 * 359.97438 * 20 19 17 36 36 H 1.07998 * 119.96939 * 179.97438 * 21 20 19 37 37 H 1.07995 * 120.02304 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46632 * 179.97438 * 25 24 23 39 39 H 1.08994 * 109.46908 * 299.99666 * 25 24 23 40 40 H 1.09003 * 109.46780 * 60.00215 * 25 24 23 41 41 H 1.07999 * 120.03274 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3548 1.9894 -1.1817 5 1 2.0747 3.0173 -1.3588 6 6 3.0561 1.2833 -2.1514 7 7 3.7047 0.1876 -1.8261 8 14 3.0772 1.8916 -3.9175 9 1 2.2753 3.1372 -4.0215 10 1 4.4770 2.1675 -4.3293 11 1 2.4955 0.8534 -4.8055 12 6 2.1367 2.0540 1.1619 13 8 2.5415 3.1974 1.1620 14 6 1.7674 1.3854 2.4609 15 1 1.9747 0.3166 2.5154 16 6 0.5285 1.9028 3.1945 17 6 1.9243 2.2017 3.7454 18 1 2.2948 3.2225 3.6508 19 6 2.3538 1.4668 4.9889 20 6 1.5762 0.4368 5.4858 21 6 1.9671 -0.2391 6.6267 22 6 3.1365 0.1129 7.2730 23 6 3.9187 1.1449 6.7759 24 8 5.0696 1.4926 7.4095 25 6 5.4137 0.7522 8.5823 26 6 3.5265 1.8186 5.6280 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.1946 -0.3051 -2.5029 33 1 -0.0791 1.1746 3.7317 34 1 -0.0191 2.7272 2.7379 35 1 0.6616 0.1605 4.9823 36 1 1.3580 -1.0428 7.0131 37 1 3.4412 -0.4152 8.1644 38 1 6.3521 1.1301 8.9882 39 1 4.6248 0.8629 9.3263 40 1 5.5269 -0.3014 8.3267 41 1 4.1359 2.6198 5.2368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358842459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:26 Heat of formation + Delta-G solvation = -36.505945 kcal Electronic energy + Delta-G solvation = -22593.963588 eV Core-core repulsion = 19246.536089 eV Total energy + Delta-G solvation = -3347.427499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34580 -40.61675 -38.93318 -37.18190 -36.45862 -33.97731 -32.03964 -31.12718 -30.79291 -28.16463 -27.59860 -24.92210 -24.34022 -23.80419 -23.39946 -21.36889 -20.23599 -18.92748 -18.61907 -17.86527 -17.21276 -17.13371 -16.74966 -16.62800 -16.16035 -15.72139 -15.49545 -14.92044 -14.63437 -14.43813 -14.33203 -13.75916 -13.73380 -13.57379 -13.34181 -13.21514 -12.87014 -12.61719 -12.58693 -12.51650 -12.39737 -12.14312 -12.06857 -11.84790 -11.69884 -11.42811 -11.34239 -10.87385 -10.37127 -9.66062 -9.39584 -9.12689 -8.34948 -6.12403 0.30264 0.50107 1.35325 1.39646 1.53916 1.91635 2.27985 2.36217 2.65024 2.95989 3.04380 3.19546 3.67778 3.86032 3.90018 3.98588 4.07687 4.16809 4.26224 4.31302 4.40154 4.41194 4.48022 4.56354 4.67442 4.72476 4.73733 4.81722 4.87937 5.02594 5.06465 5.09464 5.16238 5.31936 5.34795 5.44925 5.50952 5.58051 5.69956 5.85629 6.23391 6.48288 6.56257 7.18083 7.46481 8.08942 8.69098 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.003603 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.676321 B = 7768.792154 C = 8187.201287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.105 3.895 3 N -0.449 5.449 4 C -0.345 4.345 5 H 0.060 0.940 6 C 0.004 3.996 7 N -0.892 5.892 8 Si 0.983 3.017 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.261 1.261 12 C 0.473 3.527 13 O -0.634 6.634 14 C -0.166 4.166 15 H 0.129 0.871 16 C -0.117 4.117 17 C -0.099 4.099 18 H 0.093 0.907 19 C -0.015 4.015 20 C -0.159 4.159 21 C -0.072 4.072 22 C -0.212 4.212 23 C 0.116 3.884 24 O -0.344 6.344 25 C 0.019 3.981 26 C -0.175 4.175 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.273 0.727 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 -7.362 18.447 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 N -0.167 5.167 4 C -0.473 4.473 5 H 0.078 0.922 6 C -0.199 4.199 7 N -0.529 5.529 8 Si 0.806 3.194 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.185 1.185 12 C 0.263 3.737 13 O -0.521 6.521 14 C -0.186 4.186 15 H 0.147 0.853 16 C -0.154 4.154 17 C -0.118 4.118 18 H 0.111 0.889 19 C -0.015 4.015 20 C -0.177 4.177 21 C -0.089 4.089 22 C -0.230 4.230 23 C 0.071 3.929 24 O -0.258 6.258 25 C -0.076 4.076 26 C -0.194 4.194 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.162 0.838 34 H 0.111 0.889 35 H 0.166 0.834 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.910 -6.843 18.274 20.121 hybrid contribution 0.721 0.541 -1.100 1.422 sum -4.190 -6.301 17.174 18.767 Atomic orbital electron populations 1.22091 0.94784 1.02560 1.01567 1.21544 0.94388 0.83278 1.02602 1.43662 1.55709 1.13010 1.04293 1.19393 1.36203 0.98461 0.93240 0.92241 1.26200 0.92972 0.96578 1.04116 1.70017 1.28924 1.18566 1.35415 0.85053 0.78051 0.78753 0.77522 1.19479 1.20531 1.18532 1.20389 0.80696 0.86935 0.85635 1.90457 1.52667 1.21261 1.87731 1.22233 1.06787 0.99875 0.89752 0.85318 1.23193 0.89019 1.03247 0.99921 1.20918 1.01594 0.98801 0.90447 0.88891 1.18888 0.93589 0.95593 0.93441 1.21253 1.01455 0.96614 0.98336 1.21312 0.95269 0.98617 0.93722 1.21538 0.97757 0.99754 1.03996 1.19077 0.86683 0.94687 0.92419 1.86054 1.37939 1.59587 1.42220 1.23353 1.02684 0.96834 0.84678 1.20299 0.98646 1.03689 0.96725 0.89626 0.92099 0.94174 0.90652 0.91869 0.91731 0.83785 0.88903 0.83413 0.82059 0.82719 0.86683 0.91164 0.91605 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 10.16 71.98 0.73 -4.45 16 2 C 0.10 4.58 5.41 86.38 0.47 5.05 16 3 N -0.45 -23.88 2.50 -635.55 -1.59 -25.47 16 4 C -0.34 -20.29 8.83 84.04 0.74 -19.54 16 5 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 6 C 0.00 0.22 4.94 84.93 0.42 0.64 16 7 N -0.89 -49.73 11.66 21.66 0.25 -49.48 16 8 Si 0.98 43.48 29.59 68.60 2.03 45.51 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 12 C 0.47 24.72 7.37 87.65 0.65 25.37 16 13 O -0.63 -38.68 16.17 -3.05 -0.05 -38.73 16 14 C -0.17 -6.34 4.44 -11.54 -0.05 -6.39 16 15 H 0.13 4.54 6.52 -2.38 -0.02 4.52 16 16 C -0.12 -3.42 9.28 30.59 0.28 -3.14 16 17 C -0.10 -3.45 5.55 -11.54 -0.06 -3.51 16 18 H 0.09 3.79 7.67 -2.39 -0.02 3.78 16 19 C -0.01 -0.45 5.61 -19.88 -0.11 -0.56 16 20 C -0.16 -3.61 9.30 22.29 0.21 -3.40 16 21 C -0.07 -1.33 10.04 22.25 0.22 -1.10 16 22 C -0.21 -4.28 9.04 22.36 0.20 -4.07 16 23 C 0.12 3.13 6.69 22.51 0.15 3.28 16 24 O -0.34 -8.74 10.50 -92.49 -0.97 -9.71 16 25 C 0.02 0.26 9.81 113.37 1.11 1.37 16 26 C -0.17 -5.57 9.68 22.37 0.22 -5.35 16 27 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.06 1.89 7.39 -2.39 -0.02 1.87 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 3.67 5.81 -2.39 -0.01 3.65 16 31 H 0.06 2.51 6.25 -2.39 -0.01 2.50 16 32 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.14 2.91 6.17 -2.39 -0.01 2.90 16 34 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.15 2.63 6.01 -2.91 -0.02 2.61 16 36 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.16 2.09 6.30 -2.91 -0.02 2.07 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 0.75 7.66 -2.39 -0.02 0.74 16 40 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 41 H 0.11 3.79 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -76.59 340.15 5.88 -70.70 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 1.04 Total: 23.00 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 5.18 Total: -15.82 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -1.34 Total: -74.94 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -1.02 Total: -48.45 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -76.59 5.88 -70.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358842459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.196 kcal (2) G-P(sol) polarization free energy of solvation -76.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds