Wall clock time and date at job start Tue Mar 31 2020 07:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 119.99980 * 2 1 4 4 N 1.46506 * 109.47068 * 235.00608 * 3 2 1 5 5 C 1.46490 * 120.00541 * 79.21036 * 4 3 2 6 6 C 1.50699 * 109.46956 * 90.00065 * 5 4 3 7 7 H 1.07998 * 120.00289 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99934 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00239 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99829 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47157 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46856 * 120.00347 * 10 8 6 13 13 H 1.48499 * 109.47206 * 240.00405 * 10 8 6 14 14 C 1.34779 * 119.99526 * 259.21446 * 4 3 2 15 15 O 1.21548 * 120.00017 * 181.55160 * 14 4 3 16 16 C 1.47856 * 120.00045 * 1.55701 * 14 4 3 17 17 C 1.39590 * 120.14508 * 22.99080 * 16 14 4 18 18 C 1.37934 * 119.85325 * 179.79401 * 17 16 14 19 19 C 1.38376 * 120.14595 * 0.48785 * 18 17 16 20 20 C 1.38342 * 120.29060 * 359.74345 * 19 18 17 21 21 C 1.50703 * 119.92938 * 179.97438 * 20 19 18 22 22 O 1.42906 * 109.47010 * 270.02478 * 21 20 19 23 23 C 1.42895 * 113.99858 * 179.97438 * 22 21 20 24 24 C 1.37977 * 120.14509 * 0.02562 * 20 19 18 25 25 H 1.07999 * 120.00400 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00025 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99583 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46973 * 354.99728 * 3 2 1 29 29 H 1.08995 * 109.47514 * 115.00350 * 3 2 1 30 30 H 1.08998 * 109.47289 * 210.00547 * 5 4 3 31 31 H 1.08997 * 109.47170 * 330.00621 * 5 4 3 32 32 H 0.97004 * 120.00419 * 179.97438 * 9 8 6 33 33 H 1.08008 * 120.07201 * 0.02562 * 17 16 14 34 34 H 1.08001 * 119.92622 * 180.21542 * 18 17 16 35 35 H 1.07998 * 119.85975 * 179.76766 * 19 18 17 36 36 H 1.08999 * 109.46859 * 30.01911 * 21 20 19 37 37 H 1.08998 * 109.47190 * 150.02776 * 21 20 19 38 38 H 1.09000 * 109.47400 * 60.00314 * 23 22 21 39 39 H 1.09007 * 109.47235 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.47557 * 300.00039 * 23 22 21 41 41 H 1.08002 * 120.07520 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 -1.1316 5 6 2.5021 1.6392 -2.4769 6 6 2.5717 3.1264 -2.7096 7 1 2.9452 3.7776 -1.9332 8 6 2.1595 3.6558 -3.9141 9 7 1.7051 2.8628 -4.8598 10 14 2.2452 5.4994 -4.2023 11 1 2.7888 6.1650 -2.9913 12 1 3.1319 5.7787 -5.3603 13 1 0.8834 6.0201 -4.4847 14 6 4.3018 1.0738 -0.9347 15 8 5.0783 1.1237 -1.8685 16 6 4.7922 0.7298 0.4170 17 6 3.9154 0.2065 1.3688 18 6 4.3803 -0.1163 2.6266 19 6 5.7105 0.0871 2.9492 20 6 6.5837 0.6099 2.0122 21 6 8.0306 0.8285 2.3725 22 8 8.1946 2.1430 2.9086 23 6 9.5376 2.4538 3.2850 24 6 6.1325 0.9325 0.7488 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3585 2.1316 -0.0896 29 1 2.6213 1.4026 0.9313 30 1 3.1189 1.1266 -3.2150 31 1 1.4690 1.3047 -2.5714 32 1 1.4148 3.2353 -5.7072 33 1 2.8760 0.0511 1.1195 34 1 3.7036 -0.5245 3.3628 35 1 6.0687 -0.1638 3.9367 36 1 8.3350 0.0922 3.1163 37 1 8.6475 0.7204 1.4804 38 1 10.1861 2.3793 2.4121 39 1 9.5782 3.4682 3.6818 40 1 9.8730 1.7512 4.0478 41 1 6.8153 1.3402 0.0180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359383510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:53 Heat of formation + Delta-G solvation = 1.211024 kcal Electronic energy + Delta-G solvation = -22642.783557 eV Core-core repulsion = 19296.991589 eV Total energy + Delta-G solvation = -3345.791968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21832 -38.49769 -37.32832 -36.00969 -33.29222 -32.29716 -31.87953 -30.94914 -27.98245 -27.11309 -25.93880 -25.23098 -23.89619 -22.00539 -21.58015 -20.15644 -18.70580 -16.89694 -16.63070 -16.51968 -16.38717 -16.12431 -15.38336 -15.28377 -14.65849 -14.46547 -14.19417 -14.01708 -13.75759 -13.18359 -12.86738 -12.61833 -12.43490 -12.41409 -12.08736 -11.79171 -11.41139 -11.28944 -11.21483 -11.09804 -10.88162 -10.61793 -10.51951 -10.16566 -9.88185 -9.64492 -9.28754 -9.03525 -8.82701 -8.61738 -8.41567 -7.69857 -6.02400 -4.06767 1.06941 1.35461 2.38093 3.23597 3.31647 3.39226 3.43958 3.70979 3.99402 4.22606 4.46953 4.73002 4.78888 4.91466 5.06929 5.09397 5.15230 5.18170 5.22049 5.29607 5.32359 5.33507 5.43772 5.46793 5.59407 5.65265 5.89455 6.00851 6.04420 6.20343 6.40224 6.48197 6.52607 6.75385 6.86231 6.92797 6.97661 7.11832 7.45057 7.54268 7.94160 8.25013 8.37943 8.90690 9.06691 9.58118 11.05806 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.004572 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.211313 B = 6123.413112 C = 7498.240953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.180 4.180 3 C 0.106 3.894 4 N -0.583 5.583 5 C 0.247 3.753 6 C -0.525 4.525 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.545 3.455 15 O -0.535 6.535 16 C -0.121 4.121 17 C -0.119 4.119 18 C -0.134 4.134 19 C -0.085 4.085 20 C -0.106 4.106 21 C 0.105 3.895 22 O -0.384 6.384 23 C 0.030 3.970 24 C -0.044 4.044 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.262 0.738 33 H 0.167 0.833 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.040 0.960 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.415 -6.950 18.480 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.199 4.199 3 C -0.017 4.017 4 N -0.313 5.313 5 C 0.128 3.872 6 C -0.564 4.564 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.332 3.668 15 O -0.413 6.413 16 C -0.125 4.125 17 C -0.136 4.136 18 C -0.152 4.152 19 C -0.103 4.103 20 C -0.106 4.106 21 C 0.029 3.971 22 O -0.304 6.304 23 C -0.066 4.066 24 C -0.063 4.063 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.183 0.817 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.590 -6.768 17.768 20.123 hybrid contribution 0.209 0.836 -0.278 0.905 sum 6.799 -5.933 17.490 19.680 Atomic orbital electron populations 1.23869 0.95733 1.01978 0.99046 1.23326 0.96454 0.98988 1.01171 1.21430 0.93638 0.95308 0.91355 1.48106 1.05864 1.66705 1.10587 1.19308 0.94997 0.96288 0.76572 1.21476 1.42580 0.92229 1.00143 0.92336 1.24924 0.95125 0.98295 0.95704 1.69945 1.43177 1.34800 1.05451 0.86450 0.77561 0.85165 0.78313 1.19763 1.20866 1.20966 1.18195 0.82823 0.78317 0.87496 1.90746 1.54737 1.52547 1.43254 1.20264 0.94469 1.02555 0.95166 1.22770 1.01696 0.96082 0.93093 1.21100 0.95540 1.01551 0.97004 1.21141 0.93413 0.97412 0.98378 1.19461 0.94899 1.02090 0.94191 1.21330 0.93143 0.84758 0.97886 1.88001 1.27622 1.31928 1.82803 1.22755 0.83669 1.01314 0.98881 1.21149 0.94611 0.94930 0.95592 0.88093 0.88523 0.87187 0.89813 0.87944 0.93795 0.94693 0.92796 0.81667 0.85507 0.86015 0.92436 0.92180 0.93943 0.89575 0.94173 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 14.32 29.01 0.42 -1.74 16 2 C -0.18 -2.58 8.09 -36.03 -0.29 -2.87 16 3 C 0.11 1.79 5.31 -5.19 -0.03 1.76 16 4 N -0.58 -12.82 2.46 -177.56 -0.44 -13.26 16 5 C 0.25 6.59 5.13 -5.20 -0.03 6.56 16 6 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 7 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 10 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.54 12.16 7.53 -12.32 -0.09 12.07 16 15 O -0.53 -14.13 16.17 5.32 0.09 -14.04 16 16 C -0.12 -2.14 5.62 -104.97 -0.59 -2.73 16 17 C -0.12 -1.67 7.53 -39.19 -0.30 -1.97 16 18 C -0.13 -1.55 10.03 -39.64 -0.40 -1.95 16 19 C -0.09 -0.99 9.69 -39.49 -0.38 -1.37 16 20 C -0.11 -1.42 5.50 -104.68 -0.58 -2.00 16 21 C 0.10 1.17 6.06 36.01 0.22 1.39 16 22 O -0.38 -4.81 10.69 -35.23 -0.38 -5.19 16 23 C 0.03 0.26 11.01 101.05 1.11 1.37 16 24 C -0.04 -0.72 9.24 -39.19 -0.36 -1.08 16 25 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 26 H 0.10 1.05 8.06 -52.49 -0.42 0.62 16 27 H 0.11 1.48 7.51 -52.49 -0.39 1.09 16 28 H 0.08 1.45 7.79 -51.93 -0.40 1.05 16 29 H 0.10 1.53 4.19 -51.96 -0.22 1.31 16 30 H 0.04 1.32 7.44 -51.93 -0.39 0.93 16 31 H 0.04 0.94 8.04 -51.93 -0.42 0.52 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.17 2.17 2.35 -52.48 -0.12 2.04 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 37 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.13 2.27 7.83 -52.49 -0.41 1.86 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -34.43 347.25 -7.18 -41.61 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.69 Total: 0.96 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.72 Total: -6.38 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.30 Total: -39.37 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.29 Total: -19.23 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.43 -7.18 -41.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359383510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.819 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds