Wall clock time and date at job start Tue Mar 31 2020 07:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 119.99980 * 2 1 4 4 N 1.46506 * 109.47068 * 235.00608 * 3 2 1 5 5 C 1.46490 * 120.00541 * 79.21036 * 4 3 2 6 6 C 1.50699 * 109.46956 * 90.00065 * 5 4 3 7 7 H 1.07998 * 120.00289 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99934 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00239 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99829 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47157 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46856 * 120.00347 * 10 8 6 13 13 H 1.48499 * 109.47206 * 240.00405 * 10 8 6 14 14 C 1.34779 * 119.99526 * 259.21446 * 4 3 2 15 15 O 1.21548 * 120.00017 * 181.55160 * 14 4 3 16 16 C 1.47856 * 120.00045 * 1.55701 * 14 4 3 17 17 C 1.39590 * 120.14508 * 22.99080 * 16 14 4 18 18 C 1.37934 * 119.85325 * 179.79401 * 17 16 14 19 19 C 1.38376 * 120.14595 * 0.48785 * 18 17 16 20 20 C 1.38342 * 120.29060 * 359.74345 * 19 18 17 21 21 C 1.50703 * 119.92938 * 179.97438 * 20 19 18 22 22 O 1.42906 * 109.47010 * 270.02478 * 21 20 19 23 23 C 1.42895 * 113.99858 * 179.97438 * 22 21 20 24 24 C 1.37977 * 120.14509 * 0.02562 * 20 19 18 25 25 H 1.07999 * 120.00400 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00025 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99583 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46973 * 354.99728 * 3 2 1 29 29 H 1.08995 * 109.47514 * 115.00350 * 3 2 1 30 30 H 1.08998 * 109.47289 * 210.00547 * 5 4 3 31 31 H 1.08997 * 109.47170 * 330.00621 * 5 4 3 32 32 H 0.97004 * 120.00419 * 179.97438 * 9 8 6 33 33 H 1.08008 * 120.07201 * 0.02562 * 17 16 14 34 34 H 1.08001 * 119.92622 * 180.21542 * 18 17 16 35 35 H 1.07998 * 119.85975 * 179.76766 * 19 18 17 36 36 H 1.08999 * 109.46859 * 30.01911 * 21 20 19 37 37 H 1.08998 * 109.47190 * 150.02776 * 21 20 19 38 38 H 1.09000 * 109.47400 * 60.00314 * 23 22 21 39 39 H 1.09007 * 109.47235 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.47557 * 300.00039 * 23 22 21 41 41 H 1.08002 * 120.07520 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 -1.1316 5 6 2.5021 1.6392 -2.4769 6 6 2.5717 3.1264 -2.7096 7 1 2.9452 3.7776 -1.9332 8 6 2.1595 3.6558 -3.9141 9 7 1.7051 2.8628 -4.8598 10 14 2.2452 5.4994 -4.2023 11 1 2.7888 6.1650 -2.9913 12 1 3.1319 5.7787 -5.3603 13 1 0.8834 6.0201 -4.4847 14 6 4.3018 1.0738 -0.9347 15 8 5.0783 1.1237 -1.8685 16 6 4.7922 0.7298 0.4170 17 6 3.9154 0.2065 1.3688 18 6 4.3803 -0.1163 2.6266 19 6 5.7105 0.0871 2.9492 20 6 6.5837 0.6099 2.0122 21 6 8.0306 0.8285 2.3725 22 8 8.1946 2.1430 2.9086 23 6 9.5376 2.4538 3.2850 24 6 6.1325 0.9325 0.7488 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3585 2.1316 -0.0896 29 1 2.6213 1.4026 0.9313 30 1 3.1189 1.1266 -3.2150 31 1 1.4690 1.3047 -2.5714 32 1 1.4148 3.2353 -5.7072 33 1 2.8760 0.0511 1.1195 34 1 3.7036 -0.5245 3.3628 35 1 6.0687 -0.1638 3.9367 36 1 8.3350 0.0922 3.1163 37 1 8.6475 0.7204 1.4804 38 1 10.1861 2.3793 2.4121 39 1 9.5782 3.4682 3.6818 40 1 9.8730 1.7512 4.0478 41 1 6.8153 1.3402 0.0180 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359383510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:52 Heat of formation + Delta-G solvation = -20.977967 kcal Electronic energy + Delta-G solvation = -22643.745744 eV Core-core repulsion = 19296.991589 eV Total energy + Delta-G solvation = -3346.754155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60770 -39.71391 -38.36900 -37.58279 -35.25848 -33.76755 -33.18346 -32.13213 -29.67226 -28.20737 -27.27440 -26.18910 -25.65522 -23.57126 -22.67667 -21.42995 -20.14886 -18.66600 -18.21068 -17.86310 -17.34838 -17.22286 -16.80835 -16.42474 -16.19970 -16.07836 -15.45968 -15.26325 -14.91878 -14.51260 -14.45030 -14.29704 -13.58893 -13.57068 -13.33399 -13.15413 -12.96869 -12.79495 -12.61978 -12.42052 -12.31804 -12.25670 -12.18953 -11.75572 -11.64525 -10.76171 -10.67641 -10.64765 -10.44430 -9.97739 -9.75980 -9.52396 -8.25705 -6.40518 -0.09292 0.27547 1.25428 1.33621 1.36276 1.48480 1.86706 2.25768 2.40537 2.69582 3.03745 3.17895 3.54872 3.81114 3.91694 4.00927 4.09162 4.14153 4.25570 4.31410 4.37906 4.41792 4.54459 4.57645 4.61694 4.79710 4.85478 4.87075 4.97654 5.00099 5.04415 5.16340 5.37145 5.38578 5.46596 5.50238 5.66624 5.71423 5.90475 5.92731 6.02324 6.20256 6.62048 6.69122 7.21164 7.36461 8.81940 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.004572 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.211313 B = 6123.413112 C = 7498.240953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.199 4.199 3 C 0.103 3.897 4 N -0.588 5.588 5 C 0.265 3.735 6 C -0.546 4.546 7 H 0.049 0.951 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.968 3.032 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.265 1.265 14 C 0.534 3.466 15 O -0.596 6.596 16 C -0.149 4.149 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.070 4.070 20 C -0.108 4.108 21 C 0.104 3.896 22 O -0.414 6.414 23 C 0.024 3.976 24 C -0.066 4.066 25 H 0.101 0.899 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.126 0.874 30 H -0.003 1.003 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.176 0.824 34 H 0.172 0.828 35 H 0.163 0.837 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 -7.353 22.105 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.218 4.218 3 C -0.018 4.018 4 N -0.316 5.316 5 C 0.144 3.856 6 C -0.585 4.585 7 H 0.067 0.933 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.792 3.208 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.189 1.189 14 C 0.325 3.675 15 O -0.479 6.479 16 C -0.152 4.152 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.088 4.088 20 C -0.108 4.108 21 C 0.028 3.972 22 O -0.334 6.334 23 C -0.072 4.072 24 C -0.085 4.085 25 H 0.119 0.881 26 H 0.142 0.858 27 H 0.138 0.862 28 H 0.092 0.908 29 H 0.143 0.857 30 H 0.015 0.985 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.193 0.807 34 H 0.190 0.810 35 H 0.181 0.819 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.032 -7.181 21.441 23.403 hybrid contribution 0.389 0.909 -1.327 1.655 sum 6.421 -6.272 20.114 22.026 Atomic orbital electron populations 1.24132 0.95195 1.03311 0.96003 1.23163 0.96925 0.97832 1.03840 1.21728 0.93006 0.96793 0.90297 1.48087 1.06927 1.66324 1.10257 1.18735 0.93496 0.94847 0.78496 1.21700 1.43084 0.93179 1.00504 0.93299 1.25833 0.94372 1.03428 0.95211 1.70051 1.43501 1.37014 1.05944 0.85368 0.78388 0.78983 0.78066 1.19489 1.20572 1.18933 1.19060 0.82293 0.77064 0.89122 1.90683 1.56190 1.55366 1.45674 1.19925 0.95746 1.06176 0.93347 1.22860 1.01571 0.95645 0.93486 1.21583 0.96299 0.99525 0.96223 1.21659 0.93006 0.94798 0.99361 1.19751 0.96650 1.01400 0.93027 1.21418 0.91658 0.85279 0.98859 1.87942 1.29826 1.32592 1.83060 1.22951 0.82105 1.02419 0.99677 1.21097 0.93928 0.96534 0.96943 0.88092 0.85799 0.86180 0.90759 0.85662 0.98535 0.95307 0.92270 0.80750 0.81047 0.81908 0.89059 0.92531 0.93674 0.88845 0.91935 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 14.32 67.78 0.97 -2.53 16 2 C -0.20 -5.47 8.09 25.64 0.21 -5.27 16 3 C 0.10 3.51 5.31 85.63 0.46 3.96 16 4 N -0.59 -27.35 2.46 -833.94 -2.05 -29.40 16 5 C 0.27 15.10 5.13 85.63 0.44 15.54 16 6 C -0.55 -33.08 9.39 25.60 0.24 -32.84 16 7 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 8 C 0.01 0.64 5.46 84.66 0.46 1.10 16 9 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 10 Si 0.97 46.41 29.54 68.60 2.03 48.43 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 13 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 14 C 0.53 25.64 7.53 86.79 0.65 26.29 16 15 O -0.60 -34.57 16.17 -3.87 -0.06 -34.63 16 16 C -0.15 -5.43 5.62 -20.09 -0.11 -5.54 16 17 C -0.12 -3.14 7.53 22.52 0.17 -2.97 16 18 C -0.12 -2.23 10.03 22.23 0.22 -2.01 16 19 C -0.07 -1.33 9.69 22.33 0.22 -1.11 16 20 C -0.11 -2.72 5.50 -19.90 -0.11 -2.83 16 21 C 0.10 2.12 6.06 71.24 0.43 2.55 16 22 O -0.41 -9.70 10.69 -148.98 -1.59 -11.29 16 23 C 0.02 0.37 11.01 113.37 1.25 1.62 16 24 C -0.07 -2.24 9.24 22.53 0.21 -2.03 16 25 H 0.10 2.38 7.84 -2.91 -0.02 2.36 16 26 H 0.12 2.27 8.06 -2.91 -0.02 2.25 16 27 H 0.12 3.08 7.51 -2.91 -0.02 3.06 16 28 H 0.07 2.63 7.79 -2.39 -0.02 2.61 16 29 H 0.13 3.66 4.19 -2.41 -0.01 3.65 16 30 H 0.00 -0.23 7.44 -2.39 -0.02 -0.24 16 31 H 0.03 1.64 8.04 -2.39 -0.02 1.62 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.18 4.26 2.35 -2.91 -0.01 4.25 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 37 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 38 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.11 4.05 7.83 -2.91 -0.02 4.02 16 Total: -1.00 -81.31 347.25 5.33 -75.98 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.02 Total: 13.90 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 5.70 Total: -6.07 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.77 Total: -86.33 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -1.65 Total: -45.92 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -81.31 5.33 -75.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359383510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.005 kcal (2) G-P(sol) polarization free energy of solvation -81.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds