Wall clock time and date at job start Tue Mar 31 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 117.00270 * 2 1 4 4 C 1.38641 * 119.95153 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.87574 * 179.97438 * 4 3 2 6 6 C 1.38179 * 119.99175 * 359.97438 * 5 4 3 7 7 C 1.38495 * 120.33539 * 0.02562 * 6 5 4 8 8 C 1.38173 * 119.88408 * 359.97438 * 7 6 5 9 9 C 1.51352 * 109.78015 * 180.02562 * 8 7 6 10 10 C 1.54349 * 105.16668 * 17.18408 * 9 8 7 11 11 C 1.51379 * 130.36458 * 179.97438 * 7 6 5 12 12 H 1.09002 * 110.38191 * 281.78134 * 11 7 6 13 13 N 1.46504 * 110.30285 * 43.88243 * 11 7 6 14 14 C 1.34772 * 120.00265 * 270.75242 * 13 11 7 15 15 O 1.21283 * 120.00170 * 0.02562 * 14 13 11 16 16 C 1.50697 * 120.00154 * 180.02562 * 14 13 11 17 17 C 1.53000 * 109.47575 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47575 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99419 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.00407 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00273 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99828 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47009 * 90.00024 * 22 20 18 24 24 H 1.48498 * 109.47361 * 209.99914 * 22 20 18 25 25 H 1.48493 * 109.47187 * 330.00465 * 22 20 18 26 26 H 1.08997 * 109.47548 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46858 * 299.99978 * 1 2 3 28 28 H 1.09009 * 109.46749 * 59.99420 * 1 2 3 29 29 H 1.08005 * 120.06508 * 359.94729 * 4 3 2 30 30 H 1.07995 * 120.00214 * 179.72184 * 5 4 3 31 31 H 1.07996 * 119.82720 * 180.02562 * 6 5 4 32 32 H 1.09001 * 110.30768 * 136.10462 * 9 8 7 33 33 H 1.09000 * 110.30323 * 258.16803 * 9 8 7 34 34 H 1.09003 * 110.82416 * 91.88541 * 10 9 8 35 35 H 1.09000 * 110.82481 * 215.24277 * 10 9 8 36 36 H 0.96996 * 119.99320 * 90.75629 * 13 11 7 37 37 H 1.09002 * 109.47244 * 299.99898 * 16 14 13 38 38 H 1.09003 * 109.47125 * 59.99751 * 16 14 13 39 39 H 1.09002 * 109.46901 * 300.00291 * 17 16 14 40 40 H 1.09003 * 109.46948 * 59.99825 * 17 16 14 41 41 H 0.97001 * 119.99943 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2900 2.3730 0.0005 5 6 1.9187 3.6028 0.0011 6 6 3.2987 3.6730 0.0016 7 6 4.0581 2.5148 0.0011 8 6 3.4336 1.2822 0.0005 9 6 4.4726 0.1817 0.0007 10 6 5.7846 0.8650 0.4415 11 6 5.5602 2.3273 0.0010 12 1 5.9627 2.4877 -0.9992 13 7 6.1873 3.2466 0.9538 14 6 6.5622 4.4782 0.5550 15 8 6.3800 4.8256 -0.5926 16 6 7.2078 5.4236 1.5350 17 6 7.5334 6.7429 0.8321 18 6 8.1796 7.6881 1.8119 19 1 8.3414 7.3788 2.8339 20 6 8.5632 8.9479 1.4039 21 7 9.1267 9.7730 2.2592 22 14 8.2826 9.4831 -0.3637 23 1 6.9474 10.1224 -0.4813 24 1 9.3334 10.4550 -0.7594 25 1 8.3439 8.2974 -1.2555 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 0.2114 2.3168 0.0001 30 1 1.3318 4.5093 -0.0030 31 1 3.7876 4.6360 0.0024 32 1 4.1964 -0.5993 0.7091 33 1 4.5802 -0.2370 -1.0000 34 1 5.9110 0.8005 1.5222 35 1 6.6406 0.4292 -0.0738 36 1 6.3327 2.9688 1.8717 37 1 6.5240 5.6116 2.3628 38 1 8.1270 4.9792 1.9168 39 1 8.2174 6.5545 0.0045 40 1 6.6145 7.1875 0.4499 41 1 9.3969 10.6592 1.9720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360317194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:15 Heat of formation + Delta-G solvation = -59.443383 kcal Electronic energy + Delta-G solvation = -22400.647799 eV Core-core repulsion = 19052.225658 eV Total energy + Delta-G solvation = -3348.422141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87030 -39.38954 -38.11691 -35.78559 -33.47289 -33.41243 -31.30813 -30.22965 -29.42182 -27.35601 -27.16484 -25.44797 -22.61370 -21.65757 -21.23349 -20.58601 -19.62500 -17.96839 -17.14007 -16.61817 -16.29076 -15.93223 -15.64290 -15.50219 -15.19015 -14.57742 -14.28716 -14.07006 -13.82222 -13.13788 -13.03725 -12.84214 -12.58712 -12.52396 -12.27460 -11.97121 -11.91599 -11.49211 -11.42581 -11.38151 -11.04296 -11.01210 -10.94244 -10.14429 -10.02965 -9.77479 -9.27014 -9.16138 -8.93352 -8.72969 -8.49600 -8.24425 -6.01893 -4.00536 1.15073 1.35094 3.01966 3.14894 3.38691 3.42029 3.45484 3.56428 3.71060 4.17675 4.45227 4.51946 4.69842 4.71603 4.83973 4.90179 4.94016 5.01771 5.13305 5.28127 5.33660 5.35102 5.41186 5.57659 5.59479 5.66872 5.72543 5.90826 5.96444 6.10253 6.11809 6.16856 6.39199 6.47761 6.63779 6.68902 6.72544 7.20146 7.37820 7.45186 7.77425 7.81960 8.51451 8.67085 9.01397 9.61262 11.10967 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028038 B = 0.003284 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.409075 B = 8524.993011 C = 9047.875900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.132 3.868 4 C -0.207 4.207 5 C -0.083 4.083 6 C -0.120 4.120 7 C -0.066 4.066 8 C -0.128 4.128 9 C -0.067 4.067 10 C -0.124 4.124 11 C 0.182 3.818 12 H 0.105 0.895 13 N -0.733 5.733 14 C 0.510 3.490 15 O -0.538 6.538 16 C -0.123 4.123 17 C 0.002 3.998 18 C -0.524 4.524 19 H 0.072 0.928 20 C 0.069 3.931 21 N -0.904 5.904 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.261 1.261 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.400 0.600 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 -22.503 -3.122 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.087 3.913 4 C -0.226 4.226 5 C -0.101 4.101 6 C -0.139 4.139 7 C -0.067 4.067 8 C -0.130 4.130 9 C -0.104 4.104 10 C -0.162 4.162 11 C 0.077 3.923 12 H 0.123 0.877 13 N -0.386 5.386 14 C 0.299 3.701 15 O -0.414 6.414 16 C -0.163 4.163 17 C -0.036 4.036 18 C -0.562 4.562 19 H 0.090 0.910 20 C -0.133 4.133 21 N -0.543 5.543 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.185 1.185 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.235 0.765 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.042 0.958 40 H 0.037 0.963 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.774 -22.245 -3.947 27.554 hybrid contribution -0.505 0.537 -0.395 0.836 sum -16.279 -21.708 -4.342 27.479 Atomic orbital electron populations 1.23027 0.78716 1.03717 1.01298 1.86057 1.21071 1.27090 1.88953 1.18519 0.90635 0.84194 0.97923 1.21111 0.99723 0.92227 1.09506 1.20879 0.94305 0.97053 0.97875 1.20695 0.93229 0.98412 1.01548 1.20770 0.96002 0.92362 0.97572 1.19727 0.90495 0.96290 1.06442 1.20831 0.91410 0.95948 1.02259 1.22612 0.98003 0.93359 1.02217 1.20413 0.87615 0.88864 0.95457 0.87678 1.46246 1.63430 1.15097 1.13799 1.21579 0.76998 0.81650 0.89872 1.90659 1.54733 1.75727 1.20243 1.21677 1.00483 0.96444 0.97665 1.19361 0.97061 0.90886 0.96265 1.21118 1.39461 0.97911 0.97742 0.90954 1.24972 0.94441 0.96449 0.97401 1.69913 1.41777 1.07763 1.34840 0.86797 0.77951 0.78906 0.85908 1.20270 1.21473 1.18504 0.88404 0.92745 0.92768 0.85445 0.85529 0.85649 0.90427 0.90135 0.90137 0.89609 0.76526 0.89648 0.89573 0.95830 0.96324 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.33 10.44 -19.42 -0.20 -3.54 16 3 C 0.13 1.56 6.69 -39.17 -0.26 1.30 16 4 C -0.21 -2.27 9.03 -39.47 -0.36 -2.63 16 5 C -0.08 -1.01 10.04 -39.64 -0.40 -1.40 16 6 C -0.12 -1.72 10.00 -39.51 -0.39 -2.11 16 7 C -0.07 -0.88 5.79 -104.22 -0.60 -1.48 16 8 C -0.13 -1.55 6.11 -104.06 -0.64 -2.19 16 9 C -0.07 -0.63 6.71 -26.86 -0.18 -0.81 16 10 C -0.12 -1.11 6.76 -25.31 -0.17 -1.28 16 11 C 0.18 2.28 3.21 -68.03 -0.22 2.06 16 12 H 0.11 1.50 7.56 -51.93 -0.39 1.10 16 13 N -0.73 -9.78 5.09 -53.91 -0.27 -10.06 16 14 C 0.51 9.13 7.54 -10.99 -0.08 9.05 16 15 O -0.54 -11.65 15.41 5.55 0.09 -11.57 16 16 C -0.12 -2.36 5.64 -27.88 -0.16 -2.52 16 17 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 18 C -0.52 -15.03 9.66 -34.45 -0.33 -15.37 16 19 H 0.07 2.16 7.99 -52.48 -0.42 1.75 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 22 Si 0.88 22.68 27.47 -169.99 -4.67 18.01 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.05 0.31 7.66 -51.92 -0.40 -0.09 16 29 H 0.13 1.07 6.29 -52.48 -0.33 0.74 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.13 2.02 7.54 -52.49 -0.40 1.63 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.63 7.82 -51.93 -0.41 0.22 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 4.22 8.42 -40.82 -0.34 3.88 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 40 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -34.85 339.74 -8.13 -42.98 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.97 Total: 0.72 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -2.99 Total: -14.33 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.50 Total: -37.40 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.12 Total: -15.10 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.67 Total: 18.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.85 -8.13 -42.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360317194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.460 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds