Wall clock time and date at job start Tue Mar 31 2020 06:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 117.00270 * 2 1 4 4 C 1.38641 * 119.95153 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.87574 * 179.97438 * 4 3 2 6 6 C 1.38179 * 119.99175 * 359.97438 * 5 4 3 7 7 C 1.38495 * 120.33539 * 0.02562 * 6 5 4 8 8 C 1.38173 * 119.88408 * 359.97438 * 7 6 5 9 9 C 1.51352 * 109.78015 * 180.02562 * 8 7 6 10 10 C 1.54349 * 105.16668 * 17.18408 * 9 8 7 11 11 C 1.51379 * 130.36458 * 179.97438 * 7 6 5 12 12 H 1.09002 * 110.38191 * 281.78134 * 11 7 6 13 13 N 1.46504 * 110.30285 * 43.88243 * 11 7 6 14 14 C 1.34772 * 120.00265 * 270.75242 * 13 11 7 15 15 O 1.21283 * 120.00170 * 0.02562 * 14 13 11 16 16 C 1.50697 * 120.00154 * 180.02562 * 14 13 11 17 17 C 1.53000 * 109.47575 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47575 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99419 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.00407 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00273 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99828 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47009 * 90.00024 * 22 20 18 24 24 H 1.48498 * 109.47361 * 209.99914 * 22 20 18 25 25 H 1.48493 * 109.47187 * 330.00465 * 22 20 18 26 26 H 1.08997 * 109.47548 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46858 * 299.99978 * 1 2 3 28 28 H 1.09009 * 109.46749 * 59.99420 * 1 2 3 29 29 H 1.08005 * 120.06508 * 359.94729 * 4 3 2 30 30 H 1.07995 * 120.00214 * 179.72184 * 5 4 3 31 31 H 1.07996 * 119.82720 * 180.02562 * 6 5 4 32 32 H 1.09001 * 110.30768 * 136.10462 * 9 8 7 33 33 H 1.09000 * 110.30323 * 258.16803 * 9 8 7 34 34 H 1.09003 * 110.82416 * 91.88541 * 10 9 8 35 35 H 1.09000 * 110.82481 * 215.24277 * 10 9 8 36 36 H 0.96996 * 119.99320 * 90.75629 * 13 11 7 37 37 H 1.09002 * 109.47244 * 299.99898 * 16 14 13 38 38 H 1.09003 * 109.47125 * 59.99751 * 16 14 13 39 39 H 1.09002 * 109.46901 * 300.00291 * 17 16 14 40 40 H 1.09003 * 109.46948 * 59.99825 * 17 16 14 41 41 H 0.97001 * 119.99943 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2900 2.3730 0.0005 5 6 1.9187 3.6028 0.0011 6 6 3.2987 3.6730 0.0016 7 6 4.0581 2.5148 0.0011 8 6 3.4336 1.2822 0.0005 9 6 4.4726 0.1817 0.0007 10 6 5.7846 0.8650 0.4415 11 6 5.5602 2.3273 0.0010 12 1 5.9627 2.4877 -0.9992 13 7 6.1873 3.2466 0.9538 14 6 6.5622 4.4782 0.5550 15 8 6.3800 4.8256 -0.5926 16 6 7.2078 5.4236 1.5350 17 6 7.5334 6.7429 0.8321 18 6 8.1796 7.6881 1.8119 19 1 8.3414 7.3788 2.8339 20 6 8.5632 8.9479 1.4039 21 7 9.1267 9.7730 2.2592 22 14 8.2826 9.4831 -0.3637 23 1 6.9474 10.1224 -0.4813 24 1 9.3334 10.4550 -0.7594 25 1 8.3439 8.2974 -1.2555 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 0.2114 2.3168 0.0001 30 1 1.3318 4.5093 -0.0030 31 1 3.7876 4.6360 0.0024 32 1 4.1964 -0.5993 0.7091 33 1 4.5802 -0.2370 -1.0000 34 1 5.9110 0.8005 1.5222 35 1 6.6406 0.4292 -0.0738 36 1 6.3327 2.9688 1.8717 37 1 6.5240 5.6116 2.3628 38 1 8.1270 4.9792 1.9168 39 1 8.2174 6.5545 0.0045 40 1 6.6145 7.1875 0.4499 41 1 9.3969 10.6592 1.9720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360317194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:14 Heat of formation + Delta-G solvation = -82.503869 kcal Electronic energy + Delta-G solvation = -22401.647776 eV Core-core repulsion = 19052.225658 eV Total energy + Delta-G solvation = -3349.422118 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.79539 -40.57594 -39.10193 -36.73507 -35.53910 -34.57633 -33.27552 -31.20012 -30.24298 -28.60389 -27.97280 -26.91464 -23.48845 -23.33000 -22.15530 -21.63449 -21.09392 -19.24629 -18.73622 -17.65214 -17.47756 -16.95557 -16.62053 -16.49587 -16.39385 -16.24521 -15.58283 -15.18058 -15.01171 -14.65266 -14.36893 -14.21659 -13.76905 -13.61206 -13.40589 -12.99236 -12.90148 -12.83224 -12.77157 -12.39774 -12.12365 -12.05627 -11.96720 -11.83685 -11.79183 -11.76726 -11.39885 -10.78574 -10.76652 -10.14127 -9.66450 -9.12843 -8.31785 -6.34499 0.23751 0.40924 1.32529 1.34464 1.49768 1.69453 2.23388 2.34577 2.39994 2.73510 3.03929 3.33175 3.59855 3.88982 3.98492 4.01909 4.16856 4.21020 4.29103 4.39915 4.40600 4.42569 4.49582 4.55012 4.64491 4.74537 4.76940 4.82553 4.99247 5.01281 5.14272 5.17185 5.29304 5.34164 5.43559 5.45241 5.47815 5.60674 5.65253 5.73966 6.23542 6.42244 6.60451 6.71967 7.30837 7.33201 8.83937 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028038 B = 0.003284 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.409075 B = 8524.993011 C = 9047.875900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.128 3.872 4 C -0.204 4.204 5 C -0.089 4.089 6 C -0.149 4.149 7 C -0.083 4.083 8 C -0.136 4.136 9 C -0.063 4.063 10 C -0.111 4.111 11 C 0.177 3.823 12 H 0.084 0.916 13 N -0.710 5.710 14 C 0.516 3.484 15 O -0.581 6.581 16 C -0.117 4.117 17 C 0.006 3.994 18 C -0.528 4.528 19 H 0.050 0.950 20 C 0.013 3.987 21 N -0.944 5.944 22 Si 0.938 3.062 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.262 1.262 26 H 0.120 0.880 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.155 0.845 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.417 0.583 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.010 0.990 40 H 0.007 0.993 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.225 -24.979 -3.368 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.082 3.918 4 C -0.223 4.223 5 C -0.107 4.107 6 C -0.167 4.167 7 C -0.085 4.085 8 C -0.138 4.138 9 C -0.101 4.101 10 C -0.149 4.149 11 C 0.073 3.927 12 H 0.102 0.898 13 N -0.363 5.363 14 C 0.304 3.696 15 O -0.461 6.461 16 C -0.157 4.157 17 C -0.032 4.032 18 C -0.566 4.566 19 H 0.068 0.932 20 C -0.184 4.184 21 N -0.584 5.584 22 Si 0.763 3.237 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.186 1.186 26 H 0.139 0.861 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.173 0.827 30 H 0.159 0.841 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.254 0.746 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.029 0.971 40 H 0.025 0.975 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.187 -24.772 -4.156 30.436 hybrid contribution -0.172 1.223 -0.253 1.261 sum -17.359 -23.549 -4.409 29.586 Atomic orbital electron populations 1.23345 0.76634 1.05607 1.02128 1.86047 1.23223 1.26294 1.88618 1.18705 0.90867 0.84978 0.97215 1.21396 1.01140 0.91433 1.08285 1.21069 0.93614 0.98389 0.97612 1.20659 0.94450 0.97594 1.04038 1.20851 0.96371 0.92752 0.98493 1.20042 0.91376 0.96515 1.05835 1.20890 0.90576 0.95418 1.03170 1.22629 0.98576 0.90209 1.03484 1.20586 0.87162 0.90676 0.94324 0.89764 1.45981 1.61762 1.13644 1.14882 1.21198 0.76889 0.82725 0.88750 1.90645 1.56787 1.76824 1.21820 1.21500 1.01979 0.94427 0.97777 1.19205 0.95673 0.92949 0.95325 1.21434 1.39015 0.98642 0.97538 0.93161 1.25797 0.94439 0.96781 1.01402 1.70023 1.43160 1.08404 1.36836 0.85834 0.78364 0.78544 0.80997 1.19462 1.20308 1.18587 0.86142 0.91827 0.91953 0.82716 0.84147 0.88573 0.89010 0.89331 0.88408 0.87748 0.74577 0.88261 0.87783 0.97142 0.97492 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.01 10.44 -92.39 -0.96 -6.97 16 3 C 0.13 2.76 6.69 22.54 0.15 2.92 16 4 C -0.20 -4.12 9.03 22.34 0.20 -3.92 16 5 C -0.09 -2.12 10.04 22.23 0.22 -1.89 16 6 C -0.15 -4.35 10.00 22.32 0.22 -4.13 16 7 C -0.08 -2.21 5.79 -19.60 -0.11 -2.32 16 8 C -0.14 -3.09 6.11 -19.50 -0.12 -3.21 16 9 C -0.06 -1.03 6.71 30.51 0.20 -0.83 16 10 C -0.11 -1.69 6.76 31.51 0.21 -1.48 16 11 C 0.18 4.29 3.21 44.92 0.14 4.44 16 12 H 0.08 2.42 7.56 -2.39 -0.02 2.40 16 13 N -0.71 -18.28 5.09 -442.86 -2.25 -20.53 16 14 C 0.52 18.45 7.54 87.66 0.66 19.11 16 15 O -0.58 -25.78 15.41 -3.04 -0.05 -25.83 16 16 C -0.12 -4.47 5.64 29.85 0.17 -4.30 16 17 C 0.01 0.33 3.33 29.85 0.10 0.43 16 18 C -0.53 -30.78 9.66 25.60 0.25 -30.53 16 19 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 20 C 0.01 0.81 5.47 84.65 0.46 1.27 16 21 N -0.94 -59.54 13.96 21.44 0.30 -59.24 16 22 Si 0.94 47.33 27.47 68.60 1.88 49.21 16 23 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.26 -13.14 6.54 99.48 0.65 -12.49 16 26 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.53 7.66 -2.39 -0.02 0.51 16 28 H 0.06 0.53 7.66 -2.38 -0.02 0.51 16 29 H 0.16 2.15 6.29 -2.91 -0.02 2.13 16 30 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.10 3.31 7.54 -2.91 -0.02 3.29 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.17 7.82 -2.39 -0.02 1.15 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.42 7.94 8.42 -92.71 -0.78 7.16 16 37 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 39 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 40 H 0.01 0.35 7.53 -2.39 -0.02 0.33 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -76.97 339.74 3.00 -73.97 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.20 Total: 12.56 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 3.88 Total: -23.16 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -1.95 Total: -79.78 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.01 Total: -32.80 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.88 Total: 49.21 kcal Total: -76.97 3.00 -73.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360317194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.535 kcal (2) G-P(sol) polarization free energy of solvation -76.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds