Wall clock time and date at job start Tue Mar 31 2020 07:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00089 * 2 1 4 4 N 1.46503 * 109.47122 * 125.00362 * 3 2 1 5 5 C 1.46504 * 119.99691 * 273.66657 * 4 3 2 6 6 C 1.52999 * 109.47089 * 278.94512 * 5 4 3 7 7 O 1.42903 * 109.47014 * 65.00116 * 6 5 4 8 8 C 1.42899 * 113.99983 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00077 * 93.66459 * 4 3 2 10 10 O 1.21578 * 120.00146 * 6.53675 * 9 4 3 11 11 C 1.47647 * 119.99548 * 186.54270 * 9 4 3 12 12 C 1.40018 * 119.89316 * 150.43827 * 11 9 4 13 13 C 1.36317 * 120.10576 * 180.25122 * 12 11 9 14 14 C 1.40891 * 119.88913 * 359.51909 * 13 12 11 15 15 C 1.41107 * 120.10097 * 180.23264 * 14 13 12 16 16 H 1.08004 * 119.99952 * 206.58456 * 15 14 13 17 17 C 1.40228 * 120.00039 * 26.57846 * 15 14 13 18 18 N 1.30644 * 120.00079 * 12.11473 * 17 15 14 19 19 Si 1.86807 * 119.99919 * 192.10295 * 17 15 14 20 20 H 1.48498 * 109.46716 * 60.00726 * 19 17 15 21 21 H 1.48499 * 109.46741 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47249 * 300.00502 * 19 17 15 23 23 C 1.40881 * 119.79512 * 0.49793 * 14 13 12 24 24 C 1.36314 * 119.89311 * 359.73381 * 23 14 13 25 25 H 1.08000 * 119.99465 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99921 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.99527 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47054 * 5.00081 * 3 2 1 29 29 H 1.08997 * 109.47480 * 244.99997 * 3 2 1 30 30 H 1.09003 * 109.47004 * 38.94476 * 5 4 3 31 31 H 1.09001 * 109.46845 * 158.94417 * 5 4 3 32 32 H 1.08996 * 109.46787 * 184.99900 * 6 5 4 33 33 H 1.08997 * 109.47150 * 305.00416 * 6 5 4 34 34 H 1.08992 * 109.47577 * 180.02562 * 8 7 6 35 35 H 1.09003 * 109.47080 * 299.99947 * 8 7 6 36 36 H 1.09005 * 109.47131 * 59.99741 * 8 7 6 37 37 H 1.08004 * 119.94464 * 359.97336 * 12 11 9 38 38 H 1.07997 * 120.05149 * 179.72500 * 13 12 11 39 39 H 0.96996 * 120.00009 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.05867 * 179.70749 * 23 14 13 41 41 H 1.08005 * 119.95041 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5360 1.7898 2.4455 6 6 2.5419 3.3193 2.4831 7 8 1.5819 3.8224 1.5518 8 6 1.5064 5.2487 1.5083 9 6 4.2709 0.9351 0.9633 10 8 4.6833 0.6686 -0.1489 11 6 5.1690 0.8241 2.1300 12 6 6.2106 -0.1116 2.1222 13 6 7.0392 -0.2213 3.1991 14 6 6.8523 0.6157 4.3169 15 6 7.7104 0.5093 5.4320 16 1 7.3596 0.7954 6.4126 17 6 9.0186 0.0320 5.2670 18 7 9.5232 -0.0897 4.0681 19 14 10.0399 -0.4296 6.7615 20 1 9.3554 -1.5117 7.5136 21 1 11.3770 -0.9018 6.3206 22 1 10.1993 0.7584 7.6382 23 6 5.8027 1.5554 4.3201 24 6 4.9763 1.6545 3.2406 25 1 -0.5399 0.9354 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6214 1.4026 -0.9313 30 1 1.5243 1.4258 2.6249 31 1 3.2028 1.4047 3.2171 32 1 2.2870 3.6590 3.4869 33 1 3.5333 3.6854 2.2164 34 1 0.7554 5.5507 0.7784 35 1 1.2298 5.6281 2.4920 36 1 2.4763 5.6553 1.2216 37 1 6.3549 -0.7505 1.2635 38 1 7.8395 -0.9464 3.1940 39 1 10.4282 -0.4195 3.9540 40 1 5.6527 2.1959 5.1767 41 1 4.1710 2.3743 3.2423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361090743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:23 Heat of formation + Delta-G solvation = -13.406213 kcal Electronic energy + Delta-G solvation = -22934.056079 eV Core-core repulsion = 19587.630260 eV Total energy + Delta-G solvation = -3346.425819 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.82189 -37.77186 -37.20951 -35.50165 -34.17766 -33.26488 -30.21389 -30.09665 -29.15129 -26.80090 -26.24766 -24.94248 -22.92959 -21.46117 -21.16078 -19.90201 -18.69084 -17.73299 -16.72189 -16.43013 -15.91039 -15.69188 -15.33075 -15.06553 -14.70852 -14.33996 -14.03360 -13.52782 -13.29217 -13.01893 -12.69638 -12.58001 -12.17595 -11.92145 -11.86293 -11.64605 -11.52444 -11.37641 -11.19073 -11.17778 -11.10663 -10.78607 -10.54058 -9.98115 -9.69446 -9.49108 -9.38570 -9.35531 -8.82304 -8.23610 -7.68661 -7.51732 -6.94916 -4.60667 2.27065 2.32216 2.90820 2.95422 2.97542 2.99749 3.62344 3.74459 3.78264 3.83640 4.52219 5.05066 5.11180 5.20877 5.27511 5.32341 5.35945 5.40163 5.50491 5.55549 5.59153 5.70302 5.88266 5.96942 6.08451 6.12381 6.18004 6.25386 6.71875 6.74398 6.81535 6.83620 7.01932 7.06607 7.10728 7.16910 7.43250 7.57867 7.79262 7.85929 8.03265 8.14597 8.43959 8.64452 8.75386 9.01563 9.95298 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.003956 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.211405 B = 7076.686029 C = 7775.746637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C 0.140 3.860 4 N -0.608 5.608 5 C 0.082 3.918 6 C 0.038 3.962 7 O -0.387 6.387 8 C 0.031 3.969 9 C 0.571 3.429 10 O -0.565 6.565 11 C -0.274 4.274 12 C -0.041 4.041 13 C -0.174 4.174 14 C 0.125 3.875 15 C -0.446 4.446 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.777 5.777 19 Si 0.916 3.084 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.232 4.232 24 C -0.087 4.087 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.286 0.714 40 H 0.097 0.903 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.921 4.656 -0.420 12.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.175 4.175 3 C 0.017 3.983 4 N -0.340 5.340 5 C -0.041 4.041 6 C -0.040 4.040 7 O -0.306 6.306 8 C -0.066 4.066 9 C 0.366 3.634 10 O -0.446 6.446 11 C -0.278 4.278 12 C -0.061 4.061 13 C -0.194 4.194 14 C 0.122 3.878 15 C -0.474 4.474 16 H 0.101 0.899 17 C -0.149 4.149 18 N -0.401 5.401 19 Si 0.739 3.261 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.251 4.251 24 C -0.105 4.105 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.115 0.885 38 H 0.143 0.857 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.571 4.339 -1.257 12.422 hybrid contribution 0.666 0.106 0.787 1.037 sum -10.905 4.445 -0.470 11.786 Atomic orbital electron populations 1.23765 0.95705 1.01507 1.02277 1.23477 0.96097 0.99626 0.98310 1.20532 0.92152 0.94733 0.90848 1.47655 1.10077 1.66565 1.09691 1.22531 1.02337 0.91417 0.87780 1.23223 0.92482 0.95797 0.92482 1.87867 1.60170 1.20395 1.62130 1.22715 1.01229 0.81678 1.00960 1.18772 0.80722 0.74667 0.89191 1.90642 1.75456 1.51950 1.26524 1.18915 1.03648 1.09278 0.95982 1.20451 0.92674 0.95928 0.97035 1.21119 1.01227 1.02233 0.94803 1.17792 0.89876 0.87691 0.92439 1.19781 0.95897 1.36050 0.95671 0.89935 1.26083 0.98683 0.92730 0.97363 1.69713 1.15977 1.31041 1.23367 0.86236 0.78494 0.80071 0.81264 1.18571 1.20077 1.18769 1.20723 1.01853 1.03384 0.99187 1.21202 0.97773 0.98136 0.93408 0.88585 0.88815 0.87635 0.89318 0.89519 0.90888 0.84353 0.92265 0.92226 0.89960 0.94253 0.94137 0.88521 0.85709 0.90223 0.88455 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 14.32 29.01 0.42 -1.86 16 2 C -0.16 -2.22 9.85 -36.03 -0.35 -2.57 16 3 C 0.14 2.18 5.80 -5.19 -0.03 2.15 16 4 N -0.61 -10.64 2.46 -176.25 -0.43 -11.07 16 5 C 0.08 1.21 5.36 -4.04 -0.02 1.19 16 6 C 0.04 0.50 5.07 37.16 0.19 0.68 16 7 O -0.39 -5.02 8.72 -35.23 -0.31 -5.33 16 8 C 0.03 0.30 11.01 101.05 1.11 1.42 16 9 C 0.57 12.39 7.45 -12.42 -0.09 12.30 16 10 O -0.57 -13.90 16.18 5.30 0.09 -13.82 16 11 C -0.27 -6.21 5.62 -104.72 -0.59 -6.80 16 12 C -0.04 -1.01 9.52 -39.61 -0.38 -1.39 16 13 C -0.17 -4.42 8.62 -39.27 -0.34 -4.76 16 14 C 0.13 3.14 5.57 -106.81 -0.60 2.54 16 15 C -0.45 -10.97 9.06 -37.75 -0.34 -11.31 16 16 H 0.08 1.91 7.88 -52.48 -0.41 1.49 16 17 C 0.07 1.69 5.24 -17.31 -0.09 1.60 16 18 N -0.78 -19.08 10.75 55.56 0.60 -18.48 16 19 Si 0.92 17.40 29.58 -169.99 -5.03 12.37 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 21 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 C -0.23 -5.19 9.73 -39.28 -0.38 -5.58 16 24 C -0.09 -1.79 7.42 -39.61 -0.29 -2.09 16 25 H 0.10 1.02 7.84 -52.49 -0.41 0.61 16 26 H 0.09 0.97 8.06 -52.49 -0.42 0.54 16 27 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 28 H 0.09 1.26 5.93 -51.93 -0.31 0.96 16 29 H 0.09 1.49 7.24 -51.93 -0.38 1.11 16 30 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 31 H 0.14 2.19 3.94 -52.91 -0.21 1.98 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.87 7.31 -51.93 -0.38 0.49 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 2.32 7.90 -52.48 -0.41 1.90 16 38 H 0.13 3.25 6.08 -52.49 -0.32 2.93 16 39 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 40 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 41 H 0.12 2.00 2.64 -52.48 -0.14 1.86 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -28.63 338.58 -7.26 -35.89 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.49 Total: 9.82 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -1.79 Total: -14.48 kcal Atomic # 7 Polarization: -29.72 SS G_CDS: 0.16 Total: -29.56 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.22 Total: -19.15 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.63 -7.26 -35.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361090743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.481 kcal (2) G-P(sol) polarization free energy of solvation -28.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds