Wall clock time and date at job start Tue Mar 31 2020 06:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35899 * 117.00207 * 2 1 4 4 C 1.38735 * 120.05806 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94173 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05896 * 359.97420 * 5 4 3 7 7 C 1.50701 * 119.94611 * 180.02562 * 6 5 4 8 8 N 1.46492 * 115.55050 * 178.44469 * 7 6 5 9 9 C 1.34780 * 120.00007 * 275.03034 * 8 7 6 10 10 O 1.21290 * 119.99629 * 355.31708 * 9 8 7 11 11 C 1.50696 * 120.00547 * 175.04330 * 9 8 7 12 12 C 1.53001 * 109.47492 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.46919 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00218 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99552 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00125 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99790 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47311 * 89.99611 * 17 15 13 19 19 H 1.48497 * 109.47287 * 209.99775 * 17 15 13 20 20 H 1.48500 * 109.47133 * 330.00119 * 17 15 13 21 21 C 1.52999 * 117.51596 * 324.14726 * 7 6 5 22 22 C 1.52998 * 60.00140 * 107.48003 * 21 7 6 23 23 C 1.38265 * 120.10818 * 0.29759 * 6 5 4 24 24 C 1.38143 * 120.05754 * 359.45249 * 23 6 5 25 25 H 1.09003 * 109.47107 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46959 * 299.99911 * 1 2 3 27 27 H 1.09002 * 109.47387 * 60.00305 * 1 2 3 28 28 H 1.07994 * 120.02476 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.97044 * 179.97438 * 5 4 3 30 30 H 0.96995 * 120.00358 * 95.02588 * 8 7 6 31 31 H 1.09004 * 109.47155 * 299.99827 * 11 9 8 32 32 H 1.08997 * 109.47143 * 59.99463 * 11 9 8 33 33 H 1.09000 * 109.47048 * 299.99634 * 12 11 9 34 34 H 1.09001 * 109.46890 * 59.99923 * 12 11 9 35 35 H 0.97001 * 120.00270 * 180.02562 * 16 15 13 36 36 H 1.09006 * 117.49443 * 214.97469 * 21 7 6 37 37 H 1.09003 * 117.50344 * 359.97438 * 21 7 6 38 38 H 1.09000 * 117.49126 * 252.50975 * 22 21 7 39 39 H 1.09001 * 117.50016 * 107.48837 * 22 21 7 40 40 H 1.07999 * 119.97078 * 179.70319 * 23 6 5 41 41 H 1.07999 * 120.03007 * 180.29666 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3019 3.6758 0.0005 7 6 3.9860 5.0186 0.0005 8 7 3.0956 6.1813 -0.0348 9 6 2.6325 6.6399 -1.2145 10 8 3.0191 6.1442 -2.2517 11 6 1.6296 7.7643 -1.2447 12 6 1.2725 8.0905 -2.6962 13 6 0.2692 9.2146 -2.7262 14 1 -0.0793 9.6521 -1.8025 15 6 -0.2047 9.6835 -3.9332 16 7 0.2193 9.1503 -5.0581 17 14 -1.4489 11.0763 -3.9704 18 1 -0.7345 12.3769 -4.0282 19 1 -2.3156 10.9339 -5.1678 20 1 -2.2858 11.0253 -2.7447 21 6 5.2872 5.1489 0.7948 22 6 5.3232 5.1301 -0.7346 23 6 1.9211 3.6047 0.0067 24 6 1.2915 2.3751 0.0010 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 4.0208 0.3799 -0.0005 29 1 5.1344 2.5750 0.0000 30 1 2.8393 6.6212 0.7909 31 1 0.7300 7.4633 -0.7077 32 1 2.0584 8.6464 -0.7693 33 1 2.1722 8.3917 -3.2328 34 1 0.8439 7.2084 -3.1719 35 1 -0.1138 9.4804 -5.9072 36 1 5.4806 6.0999 1.2912 37 1 5.6485 4.2635 1.3179 38 1 5.7082 4.2321 -1.2179 39 1 5.5404 6.0687 -1.2446 40 1 1.3342 4.5113 0.0120 41 1 0.2129 2.3201 0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361776264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:35 Heat of formation + Delta-G solvation = -29.136554 kcal Electronic energy + Delta-G solvation = -22335.250722 eV Core-core repulsion = 18988.142784 eV Total energy + Delta-G solvation = -3347.107938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.51896 -39.49375 -37.88102 -36.22596 -33.43963 -32.74236 -31.16415 -30.68393 -29.90318 -27.49858 -25.81837 -23.33985 -22.76318 -22.52683 -21.78427 -20.01690 -19.34733 -18.35163 -16.90519 -16.72944 -16.30129 -15.86606 -15.58488 -15.20646 -14.95230 -14.50740 -14.41128 -13.74349 -13.63509 -13.41328 -13.09357 -12.92804 -12.32551 -12.26151 -12.06988 -12.00980 -11.68323 -11.40674 -11.16917 -10.94668 -10.89166 -10.75970 -10.60501 -10.30831 -9.96187 -9.65621 -9.16555 -9.04686 -9.01868 -8.85682 -8.32445 -8.02663 -5.96376 -4.00919 1.27472 1.34517 3.13658 3.24534 3.32778 3.33637 3.39324 3.41866 3.51985 4.04818 4.45493 4.48075 4.71525 4.78650 4.89977 4.90199 4.97342 5.02134 5.23779 5.27723 5.35244 5.38529 5.49642 5.51972 5.59061 5.70884 5.90661 5.96519 6.08883 6.19367 6.22531 6.23498 6.32937 6.49846 6.65787 6.87962 6.88618 7.27571 7.73972 7.85848 7.89750 8.06878 8.38349 8.81191 9.07890 9.62642 11.14496 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003618 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.734078 B = 7737.309300 C = 8934.373302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.149 4.149 5 C -0.079 4.079 6 C -0.079 4.079 7 C 0.140 3.860 8 N -0.715 5.715 9 C 0.510 3.490 10 O -0.520 6.520 11 C -0.130 4.130 12 C 0.038 3.962 13 C -0.528 4.528 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.171 4.171 22 C -0.149 4.149 23 C -0.061 4.061 24 C -0.202 4.202 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.400 0.600 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.261 0.739 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.190 -15.124 15.482 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.168 4.168 5 C -0.097 4.097 6 C -0.081 4.081 7 C 0.051 3.949 8 N -0.368 5.368 9 C 0.298 3.702 10 O -0.393 6.393 11 C -0.170 4.170 12 C 0.000 4.000 13 C -0.566 4.566 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.209 4.209 22 C -0.186 4.186 23 C -0.079 4.079 24 C -0.221 4.221 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.235 0.765 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.143 0.857 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.492 -15.654 14.489 22.296 hybrid contribution -1.188 1.171 0.259 1.688 sum 5.305 -14.482 14.748 21.340 Atomic orbital electron populations 1.23050 0.78419 1.03772 1.01581 1.86034 1.21384 1.27059 1.88920 1.19021 0.92382 0.84060 0.97154 1.20300 0.91304 0.98302 1.06885 1.20669 0.99692 0.90732 0.98642 1.19123 0.93493 0.92549 1.02941 1.18835 0.84378 0.84839 1.06810 1.45569 1.50803 1.30795 1.09680 1.21632 0.81715 0.84283 0.82550 1.90687 1.57700 1.58520 1.32390 1.21880 0.95958 0.94487 1.04628 1.18890 0.96880 0.96750 0.87439 1.21219 1.24878 1.18106 0.92387 0.92634 1.25022 0.96699 0.96902 0.95724 1.69997 1.43677 1.41714 0.97386 0.86598 0.81339 0.82527 0.77526 1.20667 1.21220 1.19895 1.23447 0.98492 1.03777 0.95191 1.23256 0.97466 1.04368 0.93559 1.20761 0.93953 0.97240 0.95961 1.21229 1.00107 0.92198 1.08545 0.88356 0.92677 0.92458 0.85228 0.85320 0.76527 0.90287 0.90303 0.95840 0.95843 0.92949 0.88064 0.87896 0.88070 0.87874 0.85653 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.76 10.50 -19.42 -0.20 -3.96 16 3 C 0.12 1.51 6.69 -39.22 -0.26 1.25 16 4 C -0.15 -1.77 9.99 -39.43 -0.39 -2.17 16 5 C -0.08 -0.93 8.72 -39.61 -0.35 -1.28 16 6 C -0.08 -1.08 5.67 -104.60 -0.59 -1.67 16 7 C 0.14 1.85 2.32 -132.97 -0.31 1.54 16 8 N -0.71 -10.10 4.37 -48.69 -0.21 -10.31 16 9 C 0.51 9.69 7.38 -10.99 -0.08 9.61 16 10 O -0.52 -12.17 15.35 5.55 0.09 -12.09 16 11 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 12 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 13 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.17 -1.70 9.77 -26.73 -0.26 -1.96 16 22 C -0.15 -1.90 8.87 -26.73 -0.24 -2.14 16 23 C -0.06 -0.87 9.43 -39.61 -0.37 -1.24 16 24 C -0.20 -2.62 9.04 -39.43 -0.36 -2.98 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.13 1.20 6.49 -52.49 -0.34 0.86 16 30 H 0.40 4.42 8.83 -40.82 -0.36 4.06 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.83 7.40 -51.93 -0.38 0.45 16 38 H 0.10 1.19 7.22 -51.93 -0.37 0.81 16 39 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.13 1.82 7.01 -52.49 -0.37 1.45 16 41 H 0.13 1.42 6.30 -52.49 -0.33 1.08 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -35.01 346.12 -8.18 -43.19 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.87 Total: 3.39 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.91 Total: -15.34 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.52 Total: -37.04 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.12 Total: -16.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.01 -8.18 -43.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361776264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.058 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds