Wall clock time and date at job start Tue Mar 31 2020 06:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35899 * 117.00207 * 2 1 4 4 C 1.38735 * 120.05806 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94173 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05896 * 359.97420 * 5 4 3 7 7 C 1.50701 * 119.94611 * 180.02562 * 6 5 4 8 8 N 1.46492 * 115.55050 * 178.44469 * 7 6 5 9 9 C 1.34780 * 120.00007 * 275.03034 * 8 7 6 10 10 O 1.21290 * 119.99629 * 355.31708 * 9 8 7 11 11 C 1.50696 * 120.00547 * 175.04330 * 9 8 7 12 12 C 1.53001 * 109.47492 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.46919 * 179.97438 * 12 11 9 14 14 H 1.07994 * 120.00218 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99552 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00125 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99790 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47311 * 89.99611 * 17 15 13 19 19 H 1.48497 * 109.47287 * 209.99775 * 17 15 13 20 20 H 1.48500 * 109.47133 * 330.00119 * 17 15 13 21 21 C 1.52999 * 117.51596 * 324.14726 * 7 6 5 22 22 C 1.52998 * 60.00140 * 107.48003 * 21 7 6 23 23 C 1.38265 * 120.10818 * 0.29759 * 6 5 4 24 24 C 1.38143 * 120.05754 * 359.45249 * 23 6 5 25 25 H 1.09003 * 109.47107 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46959 * 299.99911 * 1 2 3 27 27 H 1.09002 * 109.47387 * 60.00305 * 1 2 3 28 28 H 1.07994 * 120.02476 * 359.97438 * 4 3 2 29 29 H 1.07996 * 119.97044 * 179.97438 * 5 4 3 30 30 H 0.96995 * 120.00358 * 95.02588 * 8 7 6 31 31 H 1.09004 * 109.47155 * 299.99827 * 11 9 8 32 32 H 1.08997 * 109.47143 * 59.99463 * 11 9 8 33 33 H 1.09000 * 109.47048 * 299.99634 * 12 11 9 34 34 H 1.09001 * 109.46890 * 59.99923 * 12 11 9 35 35 H 0.97001 * 120.00270 * 180.02562 * 16 15 13 36 36 H 1.09006 * 117.49443 * 214.97469 * 21 7 6 37 37 H 1.09003 * 117.50344 * 359.97438 * 21 7 6 38 38 H 1.09000 * 117.49126 * 252.50975 * 22 21 7 39 39 H 1.09001 * 117.50016 * 107.48837 * 22 21 7 40 40 H 1.07999 * 119.97078 * 179.70319 * 23 6 5 41 41 H 1.07999 * 120.03007 * 180.29666 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3019 3.6758 0.0005 7 6 3.9860 5.0186 0.0005 8 7 3.0956 6.1813 -0.0348 9 6 2.6325 6.6399 -1.2145 10 8 3.0191 6.1442 -2.2517 11 6 1.6296 7.7643 -1.2447 12 6 1.2725 8.0905 -2.6962 13 6 0.2692 9.2146 -2.7262 14 1 -0.0793 9.6521 -1.8025 15 6 -0.2047 9.6835 -3.9332 16 7 0.2193 9.1503 -5.0581 17 14 -1.4489 11.0763 -3.9704 18 1 -0.7345 12.3769 -4.0282 19 1 -2.3156 10.9339 -5.1678 20 1 -2.2858 11.0253 -2.7447 21 6 5.2872 5.1489 0.7948 22 6 5.3232 5.1301 -0.7346 23 6 1.9211 3.6047 0.0067 24 6 1.2915 2.3751 0.0010 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 4.0208 0.3799 -0.0005 29 1 5.1344 2.5750 0.0000 30 1 2.8393 6.6212 0.7909 31 1 0.7300 7.4633 -0.7077 32 1 2.0584 8.6464 -0.7693 33 1 2.1722 8.3917 -3.2328 34 1 0.8439 7.2084 -3.1719 35 1 -0.1138 9.4804 -5.9072 36 1 5.4806 6.0999 1.2912 37 1 5.6485 4.2635 1.3179 38 1 5.7082 4.2321 -1.2179 39 1 5.5404 6.0687 -1.2446 40 1 1.3342 4.5113 0.0120 41 1 0.2129 2.3201 0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361776264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:34 Heat of formation + Delta-G solvation = -51.981481 kcal Electronic energy + Delta-G solvation = -22336.241352 eV Core-core repulsion = 18988.142784 eV Total energy + Delta-G solvation = -3348.098568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55122 -40.64489 -39.06784 -37.23851 -35.54775 -34.10522 -32.78441 -31.97815 -30.81716 -28.28497 -27.76195 -24.65634 -23.79374 -23.43831 -23.28165 -21.38935 -20.64521 -19.24997 -18.79847 -17.86846 -17.35351 -17.21518 -16.66267 -16.53884 -16.35315 -16.01226 -15.74327 -14.98131 -14.66432 -14.42110 -14.35302 -14.11916 -14.02280 -13.82533 -13.23965 -13.12692 -12.82619 -12.77965 -12.52860 -12.48452 -12.26233 -11.93579 -11.80099 -11.79078 -11.64352 -11.30674 -11.25829 -10.64710 -10.57598 -10.13512 -9.99709 -8.96835 -8.18624 -6.32879 0.33360 0.36798 1.41344 1.44090 1.54986 1.73595 2.12683 2.35274 2.43127 2.55884 3.09366 3.14363 3.49887 3.80445 3.86361 3.90623 4.04285 4.13466 4.28691 4.34934 4.36023 4.46270 4.53506 4.54289 4.60499 4.68071 4.72370 4.73641 4.96714 5.02623 5.08068 5.19329 5.27770 5.34500 5.45286 5.49490 5.62435 5.74439 5.75824 5.85151 6.16941 6.40064 6.62963 6.85750 7.37119 7.40582 8.93985 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003618 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.734078 B = 7737.309300 C = 8934.373302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.109 3.891 4 C -0.153 4.153 5 C -0.077 4.077 6 C -0.093 4.093 7 C 0.113 3.887 8 N -0.691 5.691 9 C 0.515 3.485 10 O -0.574 6.574 11 C -0.119 4.119 12 C 0.045 3.955 13 C -0.543 4.543 14 H 0.075 0.925 15 C -0.006 4.006 16 N -0.937 5.937 17 Si 0.973 3.027 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.255 1.255 21 C -0.128 4.128 22 C -0.167 4.167 23 C -0.086 4.086 24 C -0.211 4.211 25 H 0.123 0.877 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.150 0.850 29 H 0.156 0.844 30 H 0.418 0.582 31 H 0.102 0.898 32 H 0.104 0.896 33 H -0.018 1.018 34 H -0.020 1.020 35 H 0.263 0.737 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -15.129 18.148 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.063 3.937 4 C -0.171 4.171 5 C -0.095 4.095 6 C -0.095 4.095 7 C 0.025 3.975 8 N -0.344 5.344 9 C 0.303 3.697 10 O -0.452 6.452 11 C -0.159 4.159 12 C 0.007 3.993 13 C -0.581 4.581 14 H 0.094 0.906 15 C -0.204 4.204 16 N -0.578 5.578 17 Si 0.797 3.203 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.179 1.179 21 C -0.165 4.165 22 C -0.205 4.205 23 C -0.104 4.104 24 C -0.230 4.230 25 H 0.141 0.859 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.168 0.832 29 H 0.173 0.827 30 H 0.256 0.744 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.000 1.000 34 H -0.002 1.002 35 H 0.071 0.929 36 H 0.135 0.865 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.514 -15.661 17.241 24.185 hybrid contribution -1.179 1.084 -0.563 1.698 sum 5.335 -14.577 16.678 22.784 Atomic orbital electron populations 1.23308 0.76790 1.05579 1.01886 1.86021 1.23139 1.26574 1.88786 1.19232 0.93014 0.84286 0.97127 1.20647 0.91294 0.99225 1.05964 1.20940 1.00944 0.89969 0.97623 1.19278 0.93429 0.93303 1.03443 1.19125 0.84807 0.84122 1.09471 1.45190 1.49767 1.30666 1.08732 1.21332 0.81364 0.83814 0.83187 1.90671 1.59638 1.60264 1.34578 1.21645 0.97686 0.96293 1.00302 1.18657 0.94704 0.94782 0.91142 1.21715 1.24868 1.18248 0.93297 0.90638 1.26134 0.99048 0.99994 0.95207 1.70181 1.45514 1.43789 0.98267 0.85327 0.78345 0.78531 0.78083 1.19664 1.21201 1.17893 1.23587 0.94003 1.05819 0.93093 1.23259 0.97621 1.03610 0.96000 1.20818 0.94592 0.97302 0.97690 1.21372 1.00866 0.92108 1.08657 0.85864 0.91733 0.92790 0.83181 0.82652 0.74433 0.88004 0.87769 0.99975 1.00162 0.92878 0.86481 0.85063 0.87328 0.90315 0.86880 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -7.42 10.50 -92.41 -0.97 -8.39 16 3 C 0.11 2.68 6.69 22.51 0.15 2.83 16 4 C -0.15 -3.38 9.99 22.37 0.22 -3.16 16 5 C -0.08 -1.66 8.72 22.25 0.19 -1.47 16 6 C -0.09 -2.45 5.67 -19.85 -0.11 -2.56 16 7 C 0.11 2.84 2.32 2.86 0.01 2.85 16 8 N -0.69 -18.96 4.37 -426.33 -1.86 -20.83 16 9 C 0.51 19.97 7.38 87.66 0.65 20.62 16 10 O -0.57 -28.32 15.35 -3.06 -0.05 -28.36 16 11 C -0.12 -4.81 5.64 29.85 0.17 -4.65 16 12 C 0.04 2.52 4.26 29.85 0.13 2.64 16 13 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 14 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 15 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 16 N -0.94 -59.96 13.29 21.45 0.28 -59.68 16 17 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 C -0.13 -2.13 9.77 30.59 0.30 -1.83 16 22 C -0.17 -4.12 8.87 30.59 0.27 -3.85 16 23 C -0.09 -2.45 9.43 22.25 0.21 -2.24 16 24 C -0.21 -5.48 9.04 22.37 0.20 -5.28 16 25 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 27 H 0.05 0.85 7.66 -2.39 -0.02 0.84 16 28 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.16 2.42 6.49 -2.91 -0.02 2.40 16 30 H 0.42 8.40 8.83 -92.71 -0.82 7.58 16 31 H 0.10 3.63 8.14 -2.38 -0.02 3.61 16 32 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 33 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 34 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 35 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.13 1.51 7.40 -2.39 -0.02 1.49 16 38 H 0.11 2.45 7.22 -2.39 -0.02 2.43 16 39 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.11 3.38 7.01 -2.91 -0.02 3.36 16 41 H 0.14 3.08 6.30 -2.91 -0.02 3.07 16 Total: -1.00 -80.33 346.12 3.84 -76.48 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.22 Total: 19.77 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 4.19 Total: -25.49 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -1.58 Total: -80.50 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.02 Total: -36.76 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -80.33 3.84 -76.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361776264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.503 kcal (2) G-P(sol) polarization free energy of solvation -80.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds