Wall clock time and date at job start Tue Mar 31 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47473 * 2 1 4 4 C 1.35901 * 117.00266 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.05590 * 179.97438 * 4 3 2 6 6 C 1.38139 * 119.94279 * 179.97438 * 5 4 3 7 7 C 1.38269 * 120.05833 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.94517 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.99952 * 21.09114 * 8 7 6 10 10 C 1.54323 * 109.88051 * 259.99672 * 8 7 6 11 11 C 1.55153 * 103.10236 * 218.47902 * 10 8 7 12 12 C 1.54914 * 101.58113 * 35.41476 * 11 10 8 13 13 N 1.47317 * 110.06339 * 142.26375 * 8 7 6 14 14 C 1.34776 * 125.62115 * 298.25090 * 13 8 7 15 15 O 1.21689 * 119.99678 * 359.82743 * 14 13 8 16 16 C 1.46371 * 120.00501 * 179.83672 * 14 13 8 17 17 H 1.07999 * 119.99568 * 359.97438 * 16 14 13 18 18 C 1.40045 * 120.00122 * 179.97438 * 16 14 13 19 19 N 1.30673 * 120.00167 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00309 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46963 * 59.99829 * 20 18 16 22 22 H 1.48492 * 109.47546 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47168 * 300.00051 * 20 18 16 24 24 C 1.38265 * 120.10839 * 0.26657 * 7 6 5 25 25 C 1.38143 * 120.05696 * 359.45974 * 24 7 6 26 26 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47012 * 299.99596 * 1 2 3 28 28 H 1.08995 * 109.47297 * 59.99538 * 1 2 3 29 29 H 1.09000 * 109.47355 * 239.99763 * 2 1 3 30 30 H 1.09002 * 109.47506 * 120.00133 * 2 1 3 31 31 H 1.07999 * 120.02912 * 0.02562 * 5 4 3 32 32 H 1.08004 * 119.97139 * 180.02562 * 6 5 4 33 33 H 1.09002 * 110.72057 * 100.02653 * 10 8 7 34 34 H 1.09003 * 110.71837 * 336.93226 * 10 8 7 35 35 H 1.09001 * 111.00844 * 153.48781 * 11 10 8 36 36 H 1.09003 * 111.00424 * 277.34027 * 11 10 8 37 37 H 1.08996 * 110.36870 * 81.83287 * 12 11 10 38 38 H 1.09000 * 110.36651 * 204.04382 * 12 11 10 39 39 H 0.97001 * 120.00504 * 180.02562 * 19 18 16 40 40 H 1.08004 * 119.96889 * 179.70518 * 24 7 6 41 41 H 1.07997 * 120.03045 * 180.27011 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8067 0.0000 6 6 5.2550 2.9850 0.0011 7 6 6.0962 1.8877 0.0022 8 6 7.5903 2.0851 0.0039 9 1 7.8342 3.0814 0.3728 10 6 8.1452 1.9039 -1.4246 11 6 9.4861 1.1596 -1.1892 12 6 9.1299 0.2499 0.0130 13 7 8.2336 1.0664 0.8517 14 6 8.0336 0.9060 2.1748 15 8 7.2673 1.6421 2.7679 16 6 8.7380 -0.1535 2.8984 17 1 9.4179 -0.8070 2.3719 18 6 8.5305 -0.3199 4.2734 19 7 7.7076 0.4705 4.9103 20 14 9.4289 -1.6725 5.1967 21 1 10.8944 -1.4638 5.0778 22 1 9.0382 -1.6380 6.6289 23 1 9.0681 -2.9914 4.6174 24 6 5.5689 0.6095 -0.0034 25 6 4.1998 0.4258 0.0012 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2286 3.6642 -0.0004 32 1 5.6693 3.9824 0.0012 33 1 8.3187 2.8710 -1.8965 34 1 7.4685 1.2981 -2.0272 35 1 9.7615 0.5655 -2.0606 36 1 10.2805 1.8589 -0.9282 37 1 8.6155 -0.6478 -0.3298 38 1 10.0303 -0.0177 0.5661 39 1 7.5640 0.3556 5.8627 40 1 6.2281 -0.2460 -0.0074 41 1 3.7884 -0.5727 0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364110214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:38 Heat of formation + Delta-G solvation = -50.895471 kcal Electronic energy + Delta-G solvation = -23177.706912 eV Core-core repulsion = 19829.655437 eV Total energy + Delta-G solvation = -3348.051475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.92213 -38.74674 -36.76952 -35.50570 -32.48021 -31.97360 -30.68681 -30.25928 -30.16591 -26.89001 -26.06887 -23.86676 -22.81992 -21.75811 -21.02921 -20.52748 -18.73372 -17.95194 -16.63400 -16.07606 -15.95474 -15.52007 -15.04543 -14.67783 -14.24655 -13.96049 -13.34085 -13.23195 -13.11523 -12.95397 -12.85057 -12.58497 -12.48982 -12.11694 -11.89261 -11.61205 -11.55029 -11.21873 -11.11870 -10.87196 -10.80491 -10.68499 -10.44761 -10.29296 -10.28397 -10.21902 -10.08512 -8.83435 -8.48422 -7.73728 -7.46758 -7.16733 -6.16983 -4.62406 1.85411 1.94069 3.15255 3.20308 3.21915 3.41468 4.07254 4.22487 4.58147 4.65668 4.90987 4.96545 5.08360 5.18045 5.21155 5.27765 5.31692 5.36210 5.49310 5.59164 5.73754 5.83165 5.83517 5.86565 5.90284 5.98060 6.01175 6.13438 6.17940 6.22830 6.39964 6.49584 6.61779 6.64116 6.74544 6.88878 7.19590 7.24083 7.41736 7.44811 7.77286 8.12848 8.43350 9.03688 9.53695 10.61102 10.80762 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.005339 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.532774 B = 5243.262504 C = 6569.163405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.322 6.322 4 C 0.115 3.885 5 C -0.154 4.154 6 C -0.073 4.073 7 C -0.096 4.096 8 C 0.183 3.817 9 H 0.065 0.935 10 C -0.122 4.122 11 C -0.135 4.135 12 C 0.117 3.883 13 N -0.638 5.638 14 C 0.572 3.428 15 O -0.565 6.565 16 C -0.541 4.541 17 H 0.068 0.932 18 C 0.088 3.912 19 N -0.767 5.767 20 Si 0.905 3.095 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 C -0.052 4.052 25 C -0.207 4.207 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.268 0.732 40 H 0.121 0.879 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 -1.096 -12.779 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.237 6.237 4 C 0.070 3.930 5 C -0.173 4.173 6 C -0.092 4.092 7 C -0.097 4.097 8 C 0.078 3.922 9 H 0.083 0.917 10 C -0.160 4.160 11 C -0.173 4.173 12 C -0.008 4.008 13 N -0.378 5.378 14 C 0.378 3.622 15 O -0.446 6.446 16 C -0.578 4.578 17 H 0.086 0.914 18 C -0.132 4.132 19 N -0.396 5.396 20 Si 0.730 3.270 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.070 4.070 25 C -0.226 4.226 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.139 0.861 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.118 -0.506 -12.139 13.603 hybrid contribution 0.549 -1.044 0.595 1.321 sum -5.569 -1.550 -11.544 12.911 Atomic orbital electron populations 1.21758 0.93140 1.02543 1.03277 1.22697 0.95426 0.82582 1.01369 1.85998 1.19645 1.28716 1.89297 1.18874 0.81648 0.94277 0.98193 1.20229 0.95017 0.94356 1.07690 1.20715 0.91986 0.98508 0.97979 1.20101 0.96106 0.92955 1.00560 1.20111 0.87906 0.94042 0.90157 0.91680 1.22655 0.96877 1.00690 0.95791 1.22807 0.97103 0.99038 0.98345 1.21902 0.94542 0.93415 0.90933 1.48968 1.46702 1.34182 1.07983 1.18003 0.82118 0.85003 0.77047 1.90634 1.40106 1.48468 1.65388 1.20851 1.27599 1.16111 0.93198 0.91424 1.25699 0.93976 0.95790 0.97699 1.70013 1.27706 1.32739 1.09132 0.86471 0.80360 0.81650 0.78504 1.19267 1.20574 1.19336 1.20697 0.93658 0.97265 0.95386 1.21115 0.94461 0.97455 1.09538 0.90637 0.91601 0.91758 0.92364 0.92086 0.85927 0.85940 0.91060 0.91137 0.91061 0.91156 0.93736 0.91154 0.92091 0.86109 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.15 0.38 -1.04 16 2 C 0.05 0.68 5.46 37.15 0.20 0.88 16 3 O -0.32 -5.18 10.14 -19.43 -0.20 -5.38 16 4 C 0.11 2.04 6.69 -39.22 -0.26 1.78 16 5 C -0.15 -2.70 9.99 -39.44 -0.39 -3.10 16 6 C -0.07 -1.33 9.67 -39.61 -0.38 -1.71 16 7 C -0.10 -1.89 4.12 -104.60 -0.43 -2.32 16 8 C 0.18 3.54 3.05 -67.94 -0.21 3.33 16 9 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 10 C -0.12 -1.77 6.45 -24.90 -0.16 -1.93 16 11 C -0.13 -1.87 7.09 -24.58 -0.17 -2.05 16 12 C 0.12 2.09 6.52 -2.53 -0.02 2.08 16 13 N -0.64 -14.41 2.32 -165.74 -0.38 -14.79 16 14 C 0.57 16.28 7.41 -12.99 -0.10 16.18 16 15 O -0.56 -18.35 14.87 5.20 0.08 -18.27 16 16 C -0.54 -15.24 8.98 -35.63 -0.32 -15.56 16 17 H 0.07 1.75 6.64 -52.49 -0.35 1.40 16 18 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 19 N -0.77 -23.18 11.83 55.55 0.66 -22.52 16 20 Si 0.91 20.23 29.56 -169.99 -5.02 15.20 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 C -0.05 -1.02 9.15 -39.61 -0.36 -1.38 16 25 C -0.21 -3.75 9.04 -39.43 -0.36 -4.10 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 30 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 31 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.12 1.95 8.05 -52.48 -0.42 1.53 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.97 7.81 -51.93 -0.41 0.57 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.29 7.14 -51.93 -0.37 0.92 16 39 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 40 H 0.12 2.42 7.67 -52.48 -0.40 2.02 16 41 H 0.12 1.88 6.30 -52.49 -0.33 1.55 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -35.08 339.77 -8.44 -43.52 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.01 Total: 3.70 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -2.67 Total: -6.57 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.27 Total: -37.32 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.12 Total: -23.65 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.08 -8.44 -43.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364110214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.379 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds