Wall clock time and date at job start Tue Mar 31 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47473 * 2 1 4 4 C 1.35901 * 117.00266 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.05590 * 179.97438 * 4 3 2 6 6 C 1.38139 * 119.94279 * 179.97438 * 5 4 3 7 7 C 1.38269 * 120.05833 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.94517 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.99952 * 21.09114 * 8 7 6 10 10 C 1.54323 * 109.88051 * 259.99672 * 8 7 6 11 11 C 1.55153 * 103.10236 * 218.47902 * 10 8 7 12 12 C 1.54914 * 101.58113 * 35.41476 * 11 10 8 13 13 N 1.47317 * 110.06339 * 142.26375 * 8 7 6 14 14 C 1.34776 * 125.62115 * 298.25090 * 13 8 7 15 15 O 1.21689 * 119.99678 * 359.82743 * 14 13 8 16 16 C 1.46371 * 120.00501 * 179.83672 * 14 13 8 17 17 H 1.07999 * 119.99568 * 359.97438 * 16 14 13 18 18 C 1.40045 * 120.00122 * 179.97438 * 16 14 13 19 19 N 1.30673 * 120.00167 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00309 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46963 * 59.99829 * 20 18 16 22 22 H 1.48492 * 109.47546 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47168 * 300.00051 * 20 18 16 24 24 C 1.38265 * 120.10839 * 0.26657 * 7 6 5 25 25 C 1.38143 * 120.05696 * 359.45974 * 24 7 6 26 26 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47012 * 299.99596 * 1 2 3 28 28 H 1.08995 * 109.47297 * 59.99538 * 1 2 3 29 29 H 1.09000 * 109.47355 * 239.99763 * 2 1 3 30 30 H 1.09002 * 109.47506 * 120.00133 * 2 1 3 31 31 H 1.07999 * 120.02912 * 0.02562 * 5 4 3 32 32 H 1.08004 * 119.97139 * 180.02562 * 6 5 4 33 33 H 1.09002 * 110.72057 * 100.02653 * 10 8 7 34 34 H 1.09003 * 110.71837 * 336.93226 * 10 8 7 35 35 H 1.09001 * 111.00844 * 153.48781 * 11 10 8 36 36 H 1.09003 * 111.00424 * 277.34027 * 11 10 8 37 37 H 1.08996 * 110.36870 * 81.83287 * 12 11 10 38 38 H 1.09000 * 110.36651 * 204.04382 * 12 11 10 39 39 H 0.97001 * 120.00504 * 180.02562 * 19 18 16 40 40 H 1.08004 * 119.96889 * 179.70518 * 24 7 6 41 41 H 1.07997 * 120.03045 * 180.27011 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8067 0.0000 6 6 5.2550 2.9850 0.0011 7 6 6.0962 1.8877 0.0022 8 6 7.5903 2.0851 0.0039 9 1 7.8342 3.0814 0.3728 10 6 8.1452 1.9039 -1.4246 11 6 9.4861 1.1596 -1.1892 12 6 9.1299 0.2499 0.0130 13 7 8.2336 1.0664 0.8517 14 6 8.0336 0.9060 2.1748 15 8 7.2673 1.6421 2.7679 16 6 8.7380 -0.1535 2.8984 17 1 9.4179 -0.8070 2.3719 18 6 8.5305 -0.3199 4.2734 19 7 7.7076 0.4705 4.9103 20 14 9.4289 -1.6725 5.1967 21 1 10.8944 -1.4638 5.0778 22 1 9.0382 -1.6380 6.6289 23 1 9.0681 -2.9914 4.6174 24 6 5.5689 0.6095 -0.0034 25 6 4.1998 0.4258 0.0012 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2286 3.6642 -0.0004 32 1 5.6693 3.9824 0.0012 33 1 8.3187 2.8710 -1.8965 34 1 7.4685 1.2981 -2.0272 35 1 9.7615 0.5655 -2.0606 36 1 10.2805 1.8589 -0.9282 37 1 8.6155 -0.6478 -0.3298 38 1 10.0303 -0.0177 0.5661 39 1 7.5640 0.3556 5.8627 40 1 6.2281 -0.2460 -0.0074 41 1 3.7884 -0.5727 0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364110214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:38 Heat of formation + Delta-G solvation = -72.518617 kcal Electronic energy + Delta-G solvation = -23178.644562 eV Core-core repulsion = 19829.655437 eV Total energy + Delta-G solvation = -3348.989125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31192 -40.24289 -38.32642 -37.31556 -34.61881 -33.06645 -32.20962 -31.80167 -31.44847 -28.47953 -27.95112 -24.99137 -24.38976 -23.19780 -22.32188 -21.98836 -20.45778 -19.26010 -18.47473 -17.65652 -17.40094 -17.05206 -16.44084 -16.28600 -15.88203 -15.47314 -14.72279 -14.60309 -14.53620 -14.41532 -14.24231 -14.06657 -13.63610 -13.54842 -13.27466 -13.12443 -12.92989 -12.78406 -12.62006 -12.55465 -12.41514 -12.05214 -12.01315 -11.82942 -11.68981 -11.50203 -11.48858 -10.91512 -9.92106 -9.79705 -9.15475 -8.87908 -8.26676 -6.82391 0.41798 0.49733 1.37147 1.40837 1.51948 2.22491 2.25360 2.49188 2.73375 3.01760 3.60561 3.78810 3.85257 3.89942 3.93506 4.01122 4.08728 4.16131 4.29718 4.32704 4.41845 4.48998 4.50739 4.68430 4.75630 4.88833 4.91399 4.96835 5.00063 5.07556 5.14556 5.15951 5.18159 5.31634 5.34249 5.40990 5.45171 5.70166 5.74471 5.84774 6.08294 6.45950 6.48550 6.88806 7.56168 8.52240 8.71414 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.005339 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.532774 B = 5243.262504 C = 6569.163405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 O -0.329 6.329 4 C 0.110 3.890 5 C -0.160 4.160 6 C -0.083 4.083 7 C -0.115 4.115 8 C 0.174 3.826 9 H 0.045 0.955 10 C -0.109 4.109 11 C -0.118 4.118 12 C 0.106 3.894 13 N -0.643 5.643 14 C 0.558 3.442 15 O -0.620 6.620 16 C -0.568 4.568 17 H 0.084 0.916 18 C 0.031 3.969 19 N -0.823 5.823 20 Si 0.992 3.008 21 H -0.253 1.253 22 H -0.275 1.275 23 H -0.255 1.255 24 C -0.071 4.071 25 C -0.213 4.213 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.272 0.728 40 H 0.109 0.891 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 -2.347 -14.437 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 O -0.244 6.244 4 C 0.065 3.935 5 C -0.178 4.178 6 C -0.102 4.102 7 C -0.116 4.116 8 C 0.070 3.930 9 H 0.063 0.937 10 C -0.146 4.146 11 C -0.156 4.156 12 C -0.017 4.017 13 N -0.381 5.381 14 C 0.364 3.636 15 O -0.506 6.506 16 C -0.604 4.604 17 H 0.102 0.898 18 C -0.184 4.184 19 N -0.452 5.452 20 Si 0.811 3.189 21 H -0.177 1.177 22 H -0.200 1.200 23 H -0.179 1.179 24 C -0.090 4.090 25 C -0.232 4.232 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.127 0.873 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.653 -1.768 -13.875 15.086 hybrid contribution 0.335 -0.637 1.047 1.270 sum -5.318 -2.405 -12.828 14.094 Atomic orbital electron populations 1.21785 0.90688 1.04275 1.03363 1.23043 0.97384 0.81036 1.01696 1.86005 1.18439 1.31013 1.88966 1.19029 0.82560 0.94313 0.97631 1.20550 0.95153 0.95232 1.06895 1.20979 0.92389 0.99006 0.97808 1.20245 0.96493 0.93463 1.01396 1.20360 0.88136 0.92092 0.92430 0.93656 1.22633 0.96906 1.02571 0.92518 1.22778 0.96752 0.98486 0.97598 1.22182 0.93411 0.94255 0.91854 1.48705 1.47076 1.35109 1.07175 1.18265 0.81607 0.84703 0.78993 1.90574 1.42226 1.50225 1.67615 1.21369 1.28156 1.16660 0.94248 0.89766 1.26924 0.94442 0.98456 0.98597 1.70200 1.29950 1.35401 1.09682 0.85157 0.79186 0.77823 0.76686 1.17712 1.20030 1.17905 1.20713 0.94364 0.97020 0.96897 1.21317 0.93989 0.98680 1.09219 0.88067 0.92091 0.91078 0.90968 0.92810 0.83793 0.84279 0.88248 0.90147 0.87149 0.90668 0.92908 0.91940 0.91812 0.87270 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.28 71.98 0.74 -1.73 16 2 C 0.04 1.03 5.46 71.98 0.39 1.42 16 3 O -0.33 -10.39 10.14 -92.43 -0.94 -11.32 16 4 C 0.11 3.91 6.69 22.51 0.15 4.06 16 5 C -0.16 -5.59 9.99 22.36 0.22 -5.36 16 6 C -0.08 -3.06 9.67 22.25 0.22 -2.85 16 7 C -0.11 -4.61 4.12 -19.85 -0.08 -4.69 16 8 C 0.17 6.81 3.05 44.54 0.14 6.95 16 9 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 10 C -0.11 -2.90 6.45 31.78 0.21 -2.70 16 11 C -0.12 -2.95 7.09 31.99 0.23 -2.72 16 12 C 0.11 3.73 6.52 86.86 0.57 4.29 16 13 N -0.64 -29.64 2.32 -796.51 -1.85 -31.49 16 14 C 0.56 33.04 7.41 86.36 0.64 33.68 16 15 O -0.62 -42.45 14.87 -4.31 -0.06 -42.51 16 16 C -0.57 -32.75 8.98 24.83 0.22 -32.52 16 17 H 0.08 4.38 6.64 -2.91 -0.02 4.36 16 18 C 0.03 1.74 5.50 85.30 0.47 2.21 16 19 N -0.82 -51.58 11.83 21.83 0.26 -51.32 16 20 Si 0.99 41.74 29.56 68.60 2.03 43.77 16 21 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 22 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 24 C -0.07 -2.90 9.15 22.25 0.20 -2.69 16 25 C -0.21 -7.81 9.04 22.37 0.20 -7.61 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.51 7.66 -2.39 -0.02 1.49 16 30 H 0.05 1.35 7.66 -2.39 -0.02 1.33 16 31 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 32 H 0.14 4.46 8.05 -2.91 -0.02 4.44 16 33 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.08 2.02 7.81 -2.39 -0.02 2.01 16 35 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 2.27 7.14 -2.39 -0.02 2.25 16 39 H 0.27 15.57 8.29 -92.71 -0.77 14.80 16 40 H 0.11 4.54 7.67 -2.91 -0.02 4.52 16 41 H 0.14 4.32 6.30 -2.91 -0.02 4.30 16 Total: -1.00 -80.60 339.77 4.97 -75.63 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 1.02 Total: 27.51 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 4.51 Total: -10.27 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.59 Total: -82.81 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -1.00 Total: -53.84 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -80.60 4.97 -75.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364110214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.111 kcal (2) G-P(sol) polarization free energy of solvation -80.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds