Wall clock time and date at job start Tue Mar 31 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46508 * 119.99939 * 2 1 4 4 C 1.50701 * 109.47052 * 270.00312 * 3 2 1 5 5 H 1.08001 * 119.99888 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00181 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99736 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00238 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46921 * 60.00082 * 8 6 4 10 10 H 1.48500 * 109.46816 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46927 * 299.99810 * 8 6 4 12 12 C 1.34774 * 120.00335 * 180.02562 * 2 1 3 13 13 O 1.21286 * 120.00324 * 184.59842 * 12 2 1 14 14 C 1.50697 * 119.99754 * 4.60039 * 12 2 1 15 15 O 1.42906 * 109.71008 * 319.13387 * 14 12 2 16 16 C 1.53317 * 109.68486 * 79.67765 * 14 12 2 17 17 C 1.52735 * 108.38357 * 189.60683 * 16 14 12 18 18 C 1.50633 * 110.58523 * 308.90778 * 17 16 14 19 19 C 1.38915 * 117.74312 * 197.48142 * 18 17 16 20 20 C 1.37936 * 120.54129 * 180.54110 * 19 18 17 21 21 C 1.38268 * 119.77211 * 359.56552 * 20 19 18 22 22 C 1.37933 * 119.76832 * 0.44452 * 21 20 19 23 23 C 1.37651 * 122.56840 * 17.70490 * 18 17 16 24 24 C 1.50633 * 122.56899 * 359.38267 * 23 18 17 25 25 H 1.09009 * 109.46734 * 266.24977 * 1 2 3 26 26 H 1.08998 * 109.47490 * 26.24811 * 1 2 3 27 27 H 1.08996 * 109.47334 * 146.25274 * 1 2 3 28 28 H 1.08998 * 109.46756 * 29.99941 * 3 2 1 29 29 H 1.08998 * 109.47009 * 150.00122 * 3 2 1 30 30 H 0.97001 * 120.00100 * 180.02562 * 7 6 4 31 31 H 0.96702 * 114.00001 * 294.73087 * 15 14 12 32 32 H 1.08996 * 109.68435 * 69.88309 * 16 14 12 33 33 H 1.09001 * 109.71617 * 309.34444 * 16 14 12 34 34 H 1.09005 * 109.25358 * 188.62278 * 17 16 14 35 35 H 1.09002 * 109.22478 * 69.17621 * 17 16 14 36 36 H 1.07998 * 119.73206 * 0.26712 * 19 18 17 37 37 H 1.08003 * 120.11790 * 179.81986 * 20 19 18 38 38 H 1.07998 * 120.11818 * 180.18645 * 21 20 19 39 39 H 1.08002 * 119.72473 * 179.67240 * 22 21 20 40 40 H 1.08997 * 109.25199 * 257.42533 * 24 23 18 41 41 H 1.08993 * 109.22741 * 137.97022 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4386 3.4164 -3.4340 9 1 2.1412 3.5944 -4.1343 10 1 4.1810 4.7026 -3.4340 11 1 4.2410 2.3812 -4.1337 12 6 2.1389 -1.1671 -0.0005 13 8 3.3488 -1.1689 0.0837 14 6 1.3891 -2.4701 -0.1058 15 8 0.2084 -2.4130 0.6974 16 6 1.0071 -2.7295 -1.5678 17 6 0.0505 -3.9193 -1.6119 18 6 0.6203 -5.0856 -0.8476 19 6 0.0785 -6.3422 -1.0867 20 6 0.5490 -7.4486 -0.4106 21 6 1.5744 -7.3082 0.5062 22 6 2.1135 -6.0612 0.7452 23 6 1.6396 -4.9454 0.0668 24 6 2.2798 -3.6160 0.3700 25 1 -0.3633 -0.0672 1.0256 26 1 -0.3634 0.9217 -0.4545 27 1 -0.3634 -0.8545 -0.5709 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1385 0.5138 30 1 4.0309 4.4435 -0.8504 31 1 0.3812 -2.3401 1.6460 32 1 1.9024 -2.9566 -2.1464 33 1 0.5164 -1.8485 -1.9815 34 1 -0.1100 -4.2132 -2.6492 35 1 -0.9025 -3.6303 -1.1688 36 1 -0.7207 -6.4531 -1.8046 37 1 0.1208 -8.4219 -0.5998 38 1 1.9492 -8.1712 1.0365 39 1 2.9108 -5.9516 1.4654 40 1 3.2428 -3.5570 -0.1371 41 1 2.4339 -3.5288 1.4454 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368556983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:17 Heat of formation + Delta-G solvation = -63.019462 kcal Electronic energy + Delta-G solvation = -23521.307189 eV Core-core repulsion = 20172.729978 eV Total energy + Delta-G solvation = -3348.577211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66482 -38.97270 -36.73244 -34.96933 -34.03820 -32.58731 -32.32354 -30.04242 -28.71500 -27.77394 -25.82661 -24.32725 -23.17811 -22.19782 -22.13722 -19.63220 -19.04879 -17.15362 -16.50728 -16.42514 -15.88082 -15.36323 -15.02355 -14.83721 -14.55893 -14.37469 -14.27464 -13.83314 -13.25628 -13.10401 -12.79994 -12.61306 -12.21781 -12.18213 -12.05476 -11.90776 -11.73736 -11.41194 -11.33033 -11.16676 -10.95595 -10.81166 -10.74298 -10.54437 -10.18093 -10.07037 -9.64938 -8.80401 -8.68721 -8.47229 -8.44595 -7.63212 -6.05557 -4.10846 1.34198 1.36094 3.24023 3.31126 3.35397 3.39100 3.71959 3.84794 4.21981 4.42683 4.63101 4.71468 4.91555 4.95239 4.97316 5.04321 5.15101 5.25342 5.29537 5.41360 5.55852 5.63522 5.70211 5.86279 5.91435 5.98126 5.98947 6.06161 6.12501 6.16857 6.29221 6.42621 6.46477 6.48204 6.67728 6.99407 7.02357 7.42048 7.49792 7.61459 7.90851 8.21623 8.40561 8.86159 9.03235 9.54300 11.02459 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.003966 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.388564 B = 7058.901738 C = 7170.381668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.590 5.590 3 C 0.242 3.758 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.483 3.517 13 O -0.541 6.541 14 C 0.126 3.874 15 O -0.542 6.542 16 C -0.104 4.104 17 C -0.072 4.072 18 C -0.064 4.064 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.065 4.065 24 C -0.095 4.095 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.376 0.624 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.892 -18.689 1.908 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.321 5.321 3 C 0.123 3.877 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.267 3.733 13 O -0.419 6.419 14 C 0.082 3.918 15 O -0.348 6.348 16 C -0.141 4.141 17 C -0.109 4.109 18 C -0.064 4.064 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.065 4.065 24 C -0.132 4.132 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.224 0.776 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.453 -18.512 1.420 20.400 hybrid contribution 0.477 0.436 -0.372 0.746 sum -7.976 -18.075 1.048 19.785 Atomic orbital electron populations 1.21764 0.80571 1.02333 1.00759 1.48136 1.06724 1.07431 1.69762 1.19328 0.92627 0.78216 0.97522 1.21386 1.36660 1.06410 0.92209 0.92516 1.24937 0.95316 0.96357 0.97462 1.69925 1.38265 1.14349 1.30811 0.86556 0.78391 0.77854 0.84621 1.20196 1.21142 1.20162 1.20905 0.88127 0.85821 0.78415 1.90672 1.14004 1.87124 1.50137 1.21275 0.85187 0.91993 0.93384 1.86572 1.30461 1.96457 1.21346 1.21582 1.00738 0.99141 0.92667 1.20351 0.99358 0.92010 0.99169 1.19627 0.95542 0.94741 0.96538 1.21126 1.00308 0.92233 1.00390 1.21013 0.97655 0.98421 0.97368 1.21002 0.97406 0.97141 0.98935 1.21144 1.00220 0.92357 1.00084 1.19520 0.95972 0.94824 0.96160 1.20962 0.99640 0.90263 1.02350 0.93763 0.91873 0.90901 0.94992 0.93869 0.92635 0.77616 0.89937 0.89851 0.90775 0.89453 0.86338 0.86427 0.86381 0.86262 0.88161 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.48 9.04 59.84 0.54 2.03 16 2 N -0.59 -12.48 2.86 -182.95 -0.52 -13.00 16 3 C 0.24 6.37 5.18 -5.19 -0.03 6.34 16 4 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.48 9.84 6.68 -10.99 -0.07 9.77 16 13 O -0.54 -13.31 15.38 5.55 0.09 -13.22 16 14 C 0.13 1.89 0.54 -91.74 -0.05 1.84 16 15 O -0.54 -6.95 8.62 -35.23 -0.30 -7.26 16 16 C -0.10 -1.47 4.74 -26.70 -0.13 -1.59 16 17 C -0.07 -0.84 5.28 -28.05 -0.15 -0.99 16 18 C -0.06 -0.79 5.67 -104.62 -0.59 -1.38 16 19 C -0.12 -1.32 9.61 -39.44 -0.38 -1.70 16 20 C -0.13 -1.27 10.05 -39.68 -0.40 -1.67 16 21 C -0.13 -1.30 10.05 -39.68 -0.40 -1.70 16 22 C -0.12 -1.38 9.61 -39.44 -0.38 -1.76 16 23 C -0.06 -0.83 5.62 -104.62 -0.59 -1.42 16 24 C -0.09 -1.33 4.26 -28.05 -0.12 -1.45 16 25 H 0.04 0.64 7.89 -51.92 -0.41 0.23 16 26 H 0.06 1.09 8.04 -51.93 -0.42 0.67 16 27 H 0.07 1.09 4.60 -51.93 -0.24 0.85 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.38 3.93 9.03 45.56 0.41 4.34 16 32 H 0.08 1.22 8.10 -51.93 -0.42 0.79 16 33 H 0.08 1.23 6.82 -51.93 -0.35 0.87 16 34 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 35 H 0.09 1.00 7.73 -51.93 -0.40 0.60 16 36 H 0.12 1.04 8.05 -52.49 -0.42 0.62 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.20 8.05 -52.49 -0.42 0.78 16 40 H 0.10 1.58 7.54 -51.93 -0.39 1.19 16 41 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -32.97 331.93 -8.29 -41.26 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.10 Total: 3.64 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -3.16 Total: -7.31 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.21 Total: -38.91 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.22 Total: -20.48 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.97 -8.29 -41.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368556983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.760 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds