Wall clock time and date at job start Tue Mar 31 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46508 * 119.99939 * 2 1 4 4 C 1.50701 * 109.47052 * 270.00312 * 3 2 1 5 5 H 1.08001 * 119.99888 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00181 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99736 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00238 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46921 * 60.00082 * 8 6 4 10 10 H 1.48500 * 109.46816 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46927 * 299.99810 * 8 6 4 12 12 C 1.34774 * 120.00335 * 180.02562 * 2 1 3 13 13 O 1.21286 * 120.00324 * 184.59842 * 12 2 1 14 14 C 1.50697 * 119.99754 * 4.60039 * 12 2 1 15 15 O 1.42906 * 109.71008 * 319.13387 * 14 12 2 16 16 C 1.53317 * 109.68486 * 79.67765 * 14 12 2 17 17 C 1.52735 * 108.38357 * 189.60683 * 16 14 12 18 18 C 1.50633 * 110.58523 * 308.90778 * 17 16 14 19 19 C 1.38915 * 117.74312 * 197.48142 * 18 17 16 20 20 C 1.37936 * 120.54129 * 180.54110 * 19 18 17 21 21 C 1.38268 * 119.77211 * 359.56552 * 20 19 18 22 22 C 1.37933 * 119.76832 * 0.44452 * 21 20 19 23 23 C 1.37651 * 122.56840 * 17.70490 * 18 17 16 24 24 C 1.50633 * 122.56899 * 359.38267 * 23 18 17 25 25 H 1.09009 * 109.46734 * 266.24977 * 1 2 3 26 26 H 1.08998 * 109.47490 * 26.24811 * 1 2 3 27 27 H 1.08996 * 109.47334 * 146.25274 * 1 2 3 28 28 H 1.08998 * 109.46756 * 29.99941 * 3 2 1 29 29 H 1.08998 * 109.47009 * 150.00122 * 3 2 1 30 30 H 0.97001 * 120.00100 * 180.02562 * 7 6 4 31 31 H 0.96702 * 114.00001 * 294.73087 * 15 14 12 32 32 H 1.08996 * 109.68435 * 69.88309 * 16 14 12 33 33 H 1.09001 * 109.71617 * 309.34444 * 16 14 12 34 34 H 1.09005 * 109.25358 * 188.62278 * 17 16 14 35 35 H 1.09002 * 109.22478 * 69.17621 * 17 16 14 36 36 H 1.07998 * 119.73206 * 0.26712 * 19 18 17 37 37 H 1.08003 * 120.11790 * 179.81986 * 20 19 18 38 38 H 1.07998 * 120.11818 * 180.18645 * 21 20 19 39 39 H 1.08002 * 119.72473 * 179.67240 * 22 21 20 40 40 H 1.08997 * 109.25199 * 257.42533 * 24 23 18 41 41 H 1.08993 * 109.22741 * 137.97022 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4386 3.4164 -3.4340 9 1 2.1412 3.5944 -4.1343 10 1 4.1810 4.7026 -3.4340 11 1 4.2410 2.3812 -4.1337 12 6 2.1389 -1.1671 -0.0005 13 8 3.3488 -1.1689 0.0837 14 6 1.3891 -2.4701 -0.1058 15 8 0.2084 -2.4130 0.6974 16 6 1.0071 -2.7295 -1.5678 17 6 0.0505 -3.9193 -1.6119 18 6 0.6203 -5.0856 -0.8476 19 6 0.0785 -6.3422 -1.0867 20 6 0.5490 -7.4486 -0.4106 21 6 1.5744 -7.3082 0.5062 22 6 2.1135 -6.0612 0.7452 23 6 1.6396 -4.9454 0.0668 24 6 2.2798 -3.6160 0.3700 25 1 -0.3633 -0.0672 1.0256 26 1 -0.3634 0.9217 -0.4545 27 1 -0.3634 -0.8545 -0.5709 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1385 0.5138 30 1 4.0309 4.4435 -0.8504 31 1 0.3812 -2.3401 1.6460 32 1 1.9024 -2.9566 -2.1464 33 1 0.5164 -1.8485 -1.9815 34 1 -0.1100 -4.2132 -2.6492 35 1 -0.9025 -3.6303 -1.1688 36 1 -0.7207 -6.4531 -1.8046 37 1 0.1208 -8.4219 -0.5998 38 1 1.9492 -8.1712 1.0365 39 1 2.9108 -5.9516 1.4654 40 1 3.2428 -3.5570 -0.1371 41 1 2.4339 -3.5288 1.4454 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368556983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:17 Heat of formation + Delta-G solvation = -84.392589 kcal Electronic energy + Delta-G solvation = -23522.233997 eV Core-core repulsion = 20172.729978 eV Total energy + Delta-G solvation = -3349.504019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88324 -40.19619 -38.01196 -36.73041 -35.08138 -34.64862 -33.29986 -31.11938 -29.87686 -29.52003 -27.36027 -25.88909 -24.43944 -23.56768 -23.02554 -20.77484 -20.43043 -18.74272 -18.48467 -17.42735 -17.21203 -16.83702 -16.47277 -16.15807 -15.76533 -15.70540 -15.27444 -15.17272 -14.78262 -14.20307 -13.96065 -13.87594 -13.70906 -13.54290 -13.46623 -13.20054 -13.12091 -12.87384 -12.80611 -12.58846 -12.46710 -12.25924 -12.19666 -11.89985 -11.76546 -11.67871 -11.21602 -10.66189 -10.22799 -9.60100 -9.44432 -9.38809 -8.24437 -6.40069 0.50876 0.53811 1.35751 1.40031 1.47248 1.63913 2.24505 2.40348 2.89168 3.04992 3.08253 3.43246 3.63008 3.77733 3.98354 4.06683 4.08769 4.25536 4.37596 4.47616 4.50312 4.57686 4.68626 4.78054 4.82091 4.87020 4.94215 4.95653 4.98188 5.12280 5.17377 5.19090 5.20755 5.33808 5.53716 5.64140 5.67834 5.80218 5.81115 6.02922 6.18811 6.50024 6.68495 6.76321 7.23377 7.39242 8.82604 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.003966 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.388564 B = 7058.901738 C = 7170.381668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.595 5.595 3 C 0.256 3.744 4 C -0.546 4.546 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.474 3.526 13 O -0.593 6.593 14 C 0.147 3.853 15 O -0.532 6.532 16 C -0.105 4.105 17 C -0.062 4.062 18 C -0.079 4.079 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.083 4.083 24 C -0.087 4.087 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.022 0.978 29 H -0.002 1.002 30 H 0.268 0.732 31 H 0.389 0.611 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 -20.799 0.785 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.325 5.325 3 C 0.135 3.865 4 C -0.584 4.584 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.261 3.739 13 O -0.474 6.474 14 C 0.102 3.898 15 O -0.339 6.339 16 C -0.143 4.143 17 C -0.099 4.099 18 C -0.079 4.079 19 C -0.144 4.144 20 C -0.143 4.143 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.083 4.083 24 C -0.125 4.125 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.040 0.960 29 H 0.016 0.984 30 H 0.077 0.923 31 H 0.239 0.761 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.092 0.908 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.588 -20.640 0.314 23.200 hybrid contribution 1.125 1.046 0.059 1.537 sum -9.464 -19.595 0.373 21.763 Atomic orbital electron populations 1.21986 0.77532 1.02950 1.02775 1.48152 1.08522 1.06106 1.69759 1.18809 0.91121 0.80407 0.96183 1.21669 1.37092 1.06780 0.92907 0.92739 1.25882 0.94785 0.96335 1.02124 1.70048 1.38760 1.14794 1.33187 0.85458 0.78919 0.77415 0.78994 1.18360 1.20277 1.20183 1.22005 0.87887 0.87270 0.76702 1.90636 1.16578 1.88044 1.52168 1.20949 0.85344 0.88754 0.94709 1.86545 1.28916 1.96111 1.22357 1.21597 1.00971 1.00339 0.91413 1.20315 0.98492 0.90554 1.00516 1.19767 0.95772 0.95701 0.96632 1.21401 1.00655 0.91640 1.00722 1.21401 0.97030 0.99497 0.96403 1.21326 0.97214 0.97248 0.98926 1.21311 1.00642 0.92717 1.00322 1.19440 0.97099 0.94117 0.97660 1.20827 0.98404 0.91063 1.02214 0.91163 0.92611 0.88686 0.95956 0.98357 0.92330 0.76112 0.91195 0.90430 0.88760 0.88721 0.84120 0.83704 0.84101 0.85727 0.90768 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.89 9.04 127.77 1.15 4.05 16 2 N -0.60 -25.85 2.86 -851.13 -2.43 -28.28 16 3 C 0.26 14.11 5.18 85.63 0.44 14.55 16 4 C -0.55 -31.86 9.39 25.60 0.24 -31.62 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.46 5.46 84.65 0.46 0.92 16 7 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 8 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 C 0.47 20.01 6.68 87.66 0.59 20.59 16 13 O -0.59 -30.91 15.38 -3.05 -0.05 -30.96 16 14 C 0.15 4.40 0.54 -11.52 -0.01 4.39 16 15 O -0.53 -12.71 8.62 -148.98 -1.28 -13.99 16 16 C -0.11 -2.91 4.74 30.61 0.15 -2.77 16 17 C -0.06 -1.30 5.28 29.74 0.16 -1.14 16 18 C -0.08 -1.75 5.67 -19.86 -0.11 -1.86 16 19 C -0.13 -2.29 9.61 22.36 0.21 -2.07 16 20 C -0.13 -2.06 10.05 22.21 0.22 -1.84 16 21 C -0.13 -2.29 10.05 22.20 0.22 -2.07 16 22 C -0.13 -2.85 9.61 22.36 0.21 -2.63 16 23 C -0.08 -2.04 5.62 -19.86 -0.11 -2.15 16 24 C -0.09 -2.50 4.26 29.74 0.13 -2.37 16 25 H 0.07 1.91 7.89 -2.38 -0.02 1.89 16 26 H 0.06 1.89 8.04 -2.39 -0.02 1.87 16 27 H 0.09 2.66 4.60 -2.39 -0.01 2.65 16 28 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 29 H 0.00 -0.11 7.36 -2.39 -0.02 -0.12 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.39 7.42 9.03 -74.06 -0.67 6.75 16 32 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 33 H 0.08 2.21 6.82 -2.39 -0.02 2.19 16 34 H 0.09 1.60 8.13 -2.38 -0.02 1.58 16 35 H 0.09 1.86 7.73 -2.39 -0.02 1.84 16 36 H 0.14 1.87 8.05 -2.91 -0.02 1.85 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.12 2.43 8.05 -2.91 -0.02 2.40 16 40 H 0.07 2.49 7.54 -2.39 -0.02 2.47 16 41 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 Total: -1.00 -74.06 331.93 2.88 -71.18 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.37 Total: 17.40 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 3.96 Total: -6.01 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -2.15 Total: -84.69 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -1.33 Total: -44.95 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -74.06 2.88 -71.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368556983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.210 kcal (2) G-P(sol) polarization free energy of solvation -74.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds