Wall clock time and date at job start Tue Mar 31 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47325 * 2 1 4 4 C 1.37104 * 119.99975 * 267.77863 * 3 2 1 5 5 H 1.07995 * 120.00330 * 137.40310 * 4 3 2 6 6 C 1.38954 * 119.99666 * 317.40633 * 4 3 2 7 7 N 1.31411 * 119.99722 * 166.26200 * 6 4 3 8 8 Si 1.86798 * 120.00081 * 346.26269 * 6 4 3 9 9 H 1.48500 * 109.47263 * 92.72656 * 8 6 4 10 10 H 1.48504 * 109.46970 * 212.72503 * 8 6 4 11 11 H 1.48498 * 109.47246 * 332.72589 * 8 6 4 12 12 C 1.34770 * 120.00322 * 87.77547 * 3 2 1 13 13 O 1.21296 * 119.99961 * 3.84587 * 12 3 2 14 14 C 1.50698 * 120.00318 * 183.84333 * 12 3 2 15 15 O 1.42903 * 109.68104 * 314.93823 * 14 12 3 16 16 C 1.53321 * 109.68201 * 194.41678 * 14 12 3 17 17 C 1.52745 * 108.38559 * 170.40858 * 16 14 12 18 18 C 1.50631 * 110.59015 * 51.10200 * 17 16 14 19 19 C 1.38900 * 117.75611 * 162.27349 * 18 17 16 20 20 C 1.37934 * 120.54691 * 179.76487 * 19 18 17 21 21 C 1.38263 * 119.76911 * 359.95718 * 20 19 18 22 22 C 1.37929 * 119.77305 * 0.12864 * 21 20 19 23 23 C 1.37668 * 122.55990 * 342.22928 * 18 17 16 24 24 C 1.50631 * 122.56499 * 0.72142 * 23 18 17 25 25 H 1.08994 * 109.47239 * 175.13396 * 1 2 3 26 26 H 1.08994 * 109.46959 * 295.13808 * 1 2 3 27 27 H 1.09007 * 109.46700 * 55.12942 * 1 2 3 28 28 H 1.08997 * 109.47077 * 119.99786 * 2 1 3 29 29 H 1.09001 * 109.47528 * 240.00059 * 2 1 3 30 30 H 0.97001 * 119.99756 * 179.97438 * 7 6 4 31 31 H 0.96698 * 113.99677 * 75.73212 * 15 14 12 32 32 H 1.09001 * 109.68576 * 290.13219 * 16 14 12 33 33 H 1.09001 * 109.68561 * 50.65409 * 16 14 12 34 34 H 1.08996 * 109.25240 * 171.39209 * 17 16 14 35 35 H 1.09000 * 109.24990 * 290.81780 * 17 16 14 36 36 H 1.08007 * 119.72905 * 359.78570 * 19 18 17 37 37 H 1.07998 * 120.11316 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.11592 * 180.09598 * 21 20 19 39 39 H 1.08000 * 119.72762 * 180.02562 * 22 21 20 40 40 H 1.08997 * 109.25819 * 221.92710 * 24 23 18 41 41 H 1.09002 * 109.24837 * 102.50161 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2903 2.0122 -1.1865 5 1 1.9873 3.0382 -1.3344 6 6 2.9558 1.3315 -2.1987 7 7 2.9811 1.8255 -3.4162 8 14 3.8145 -0.2856 -1.8289 9 1 2.8862 -1.4125 -2.1004 10 1 5.0168 -0.4161 -2.6907 11 1 4.2232 -0.3140 -0.4015 12 6 2.2003 2.0317 1.1662 13 8 2.0268 1.4520 2.2175 14 6 2.6194 3.4793 1.1643 15 8 3.6726 3.6741 0.2183 16 6 3.1017 3.8791 2.5637 17 6 3.7395 5.2642 2.4759 18 6 2.8156 6.2298 1.7810 19 6 3.0583 7.5878 1.9430 20 6 2.2511 8.5224 1.3286 21 6 1.1919 8.1050 0.5440 22 6 0.9481 6.7570 0.3833 23 6 1.7580 5.8142 1.0037 24 6 1.4268 4.3595 0.7961 25 1 -0.3633 -1.0239 -0.0872 26 1 -0.3633 0.4365 0.9303 27 1 -0.3633 0.5876 -0.8432 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.4460 1.3505 -4.1227 31 1 3.3774 3.6828 -0.7025 32 1 2.2551 3.9076 3.2496 33 1 3.8375 3.1575 2.9185 34 1 3.9489 5.6279 3.4819 35 1 4.6732 5.1952 1.9178 36 1 3.8862 7.9147 2.5549 37 1 2.4460 9.5766 1.4597 38 1 0.5572 8.8320 0.0591 39 1 0.1208 6.4318 -0.2300 40 1 1.1683 4.1955 -0.2500 41 1 0.5757 4.0919 1.4222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376767765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:51 Heat of formation + Delta-G solvation = -53.165700 kcal Electronic energy + Delta-G solvation = -24278.163425 eV Core-core repulsion = 20930.013505 eV Total energy + Delta-G solvation = -3348.149920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.30872 -38.81519 -36.36066 -35.33210 -33.41520 -32.25074 -32.09242 -30.14187 -29.48923 -28.27727 -25.11864 -23.86857 -23.29275 -21.94943 -21.82716 -19.54595 -18.79723 -17.80199 -16.30566 -16.10266 -15.81724 -15.44792 -14.82442 -14.44376 -14.21217 -13.86893 -13.80284 -13.73370 -13.36532 -12.85966 -12.77960 -12.75097 -12.31563 -12.14736 -11.85811 -11.72155 -11.49049 -11.37447 -11.10828 -10.99958 -10.89505 -10.81259 -10.41190 -10.31281 -10.09144 -9.85852 -9.70738 -9.18956 -8.52063 -8.33711 -8.23231 -7.79405 -6.56496 -4.27196 1.60632 1.63133 3.01244 3.18407 3.28609 3.57207 3.99410 4.06098 4.26096 4.77722 4.90696 4.99784 5.18300 5.21543 5.26407 5.38960 5.42639 5.55310 5.67064 5.72934 5.79030 5.93625 5.97217 6.02356 6.04628 6.08010 6.23078 6.25871 6.31179 6.36479 6.38957 6.54597 6.58627 6.71568 6.73759 6.76078 6.80917 6.98117 7.26601 7.32023 7.88183 8.06960 8.62927 8.82254 9.21929 9.57134 10.51333 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020552 B = 0.005822 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.067317 B = 4808.366210 C = 5111.417516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.094 3.906 3 N -0.461 5.461 4 C -0.355 4.355 5 H 0.106 0.894 6 C 0.072 3.928 7 N -0.861 5.861 8 Si 0.890 3.110 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.261 1.261 12 C 0.470 3.530 13 O -0.591 6.591 14 C 0.147 3.853 15 O -0.551 6.551 16 C -0.088 4.088 17 C -0.075 4.075 18 C -0.062 4.062 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.118 4.118 23 C -0.061 4.061 24 C -0.109 4.109 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 7.811 6.077 10.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.029 4.029 3 N -0.183 5.183 4 C -0.482 4.482 5 H 0.123 0.877 6 C -0.137 4.137 7 N -0.496 5.496 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.185 1.185 12 C 0.258 3.742 13 O -0.476 6.476 14 C 0.103 3.897 15 O -0.366 6.366 16 C -0.126 4.126 17 C -0.112 4.112 18 C -0.062 4.062 19 C -0.143 4.143 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.136 4.136 23 C -0.061 4.061 24 C -0.146 4.146 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.254 0.746 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.112 0.888 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.721 7.519 6.866 10.326 hybrid contribution -0.010 -0.854 -0.830 1.191 sum -1.731 6.665 6.036 9.157 Atomic orbital electron populations 1.21998 0.96433 1.00873 1.02105 1.21604 0.94457 0.85817 1.01034 1.43723 1.57198 1.11622 1.05710 1.18942 1.38804 1.00071 0.90351 0.87681 1.25369 0.95037 0.98587 0.94690 1.69680 1.39683 1.39945 1.00283 0.86724 0.79096 0.82745 0.79627 1.20284 1.21594 1.18486 1.21157 0.79374 0.90044 0.83638 1.90534 1.56198 1.69153 1.31680 1.20770 0.87711 0.90144 0.91101 1.86358 1.34378 1.94766 1.21051 1.21327 1.01297 0.95955 0.94051 1.20400 0.98363 0.93205 0.99220 1.19660 0.95466 0.93983 0.97056 1.21097 0.99815 0.92541 1.00838 1.20968 0.96141 0.99000 0.98504 1.20966 0.98339 0.95619 0.99743 1.21157 0.99656 0.92914 0.99899 1.19525 0.94988 0.94975 0.96615 1.21219 0.98671 0.90878 1.03831 0.92996 0.92910 0.91930 0.91444 0.91799 0.91240 0.74623 0.90647 0.90633 0.91286 0.89522 0.86510 0.86611 0.86516 0.86274 0.88775 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 10.23 37.16 0.38 -2.54 16 2 C 0.09 2.04 4.76 -4.04 -0.02 2.02 16 3 N -0.46 -10.73 2.13 -114.81 -0.24 -10.97 16 4 C -0.36 -8.56 6.92 -14.93 -0.10 -8.66 16 5 H 0.11 2.55 4.53 -52.49 -0.24 2.31 16 6 C 0.07 1.79 5.40 -17.47 -0.09 1.70 16 7 N -0.86 -22.43 13.96 55.50 0.77 -21.66 16 8 Si 0.89 20.50 24.79 -169.99 -4.21 16.28 16 9 H -0.28 -6.09 6.69 56.52 0.38 -5.71 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.26 -6.29 7.09 56.52 0.40 -5.88 16 12 C 0.47 10.81 6.64 -10.99 -0.07 10.74 16 13 O -0.59 -14.61 15.68 5.54 0.09 -14.52 16 14 C 0.15 2.94 0.66 -91.74 -0.06 2.87 16 15 O -0.55 -11.77 11.33 -35.23 -0.40 -12.17 16 16 C -0.09 -1.57 4.46 -26.70 -0.12 -1.69 16 17 C -0.08 -1.15 5.28 -28.05 -0.15 -1.29 16 18 C -0.06 -0.96 5.68 -104.62 -0.59 -1.55 16 19 C -0.12 -1.69 9.61 -39.45 -0.38 -2.07 16 20 C -0.13 -1.61 10.05 -39.68 -0.40 -2.01 16 21 C -0.13 -1.67 10.05 -39.69 -0.40 -2.07 16 22 C -0.12 -1.73 9.61 -39.45 -0.38 -2.11 16 23 C -0.06 -1.00 5.62 -104.62 -0.59 -1.58 16 24 C -0.11 -1.93 4.39 -28.05 -0.12 -2.06 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 28 H 0.07 1.48 7.44 -51.93 -0.39 1.10 16 29 H 0.06 1.42 3.35 -51.93 -0.17 1.24 16 30 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.40 8.74 5.39 45.56 0.25 8.98 16 32 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 33 H 0.07 1.41 8.05 -51.93 -0.42 0.99 16 34 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.09 1.38 7.73 -51.93 -0.40 0.98 16 36 H 0.12 1.32 8.05 -52.48 -0.42 0.90 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.12 1.59 8.05 -52.49 -0.42 1.17 16 40 H 0.09 1.74 6.01 -51.93 -0.31 1.43 16 41 H 0.08 1.41 8.11 -51.93 -0.42 0.98 16 LS Contribution 319.92 15.07 4.82 4.82 Total: -1.00 -27.84 319.92 -7.34 -35.18 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.07 Total: 13.35 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.10 Total: -10.31 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.53 Total: -32.63 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.31 Total: -26.69 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.21 Total: 16.28 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.84 -7.34 -35.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376767765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.989 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds