Wall clock time and date at job start Tue Mar 31 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47325 * 2 1 4 4 C 1.37104 * 119.99975 * 267.77863 * 3 2 1 5 5 H 1.07995 * 120.00330 * 137.40310 * 4 3 2 6 6 C 1.38954 * 119.99666 * 317.40633 * 4 3 2 7 7 N 1.31411 * 119.99722 * 166.26200 * 6 4 3 8 8 Si 1.86798 * 120.00081 * 346.26269 * 6 4 3 9 9 H 1.48500 * 109.47263 * 92.72656 * 8 6 4 10 10 H 1.48504 * 109.46970 * 212.72503 * 8 6 4 11 11 H 1.48498 * 109.47246 * 332.72589 * 8 6 4 12 12 C 1.34770 * 120.00322 * 87.77547 * 3 2 1 13 13 O 1.21296 * 119.99961 * 3.84587 * 12 3 2 14 14 C 1.50698 * 120.00318 * 183.84333 * 12 3 2 15 15 O 1.42903 * 109.68104 * 314.93823 * 14 12 3 16 16 C 1.53321 * 109.68201 * 194.41678 * 14 12 3 17 17 C 1.52745 * 108.38559 * 170.40858 * 16 14 12 18 18 C 1.50631 * 110.59015 * 51.10200 * 17 16 14 19 19 C 1.38900 * 117.75611 * 162.27349 * 18 17 16 20 20 C 1.37934 * 120.54691 * 179.76487 * 19 18 17 21 21 C 1.38263 * 119.76911 * 359.95718 * 20 19 18 22 22 C 1.37929 * 119.77305 * 0.12864 * 21 20 19 23 23 C 1.37668 * 122.55990 * 342.22928 * 18 17 16 24 24 C 1.50631 * 122.56499 * 0.72142 * 23 18 17 25 25 H 1.08994 * 109.47239 * 175.13396 * 1 2 3 26 26 H 1.08994 * 109.46959 * 295.13808 * 1 2 3 27 27 H 1.09007 * 109.46700 * 55.12942 * 1 2 3 28 28 H 1.08997 * 109.47077 * 119.99786 * 2 1 3 29 29 H 1.09001 * 109.47528 * 240.00059 * 2 1 3 30 30 H 0.97001 * 119.99756 * 179.97438 * 7 6 4 31 31 H 0.96698 * 113.99677 * 75.73212 * 15 14 12 32 32 H 1.09001 * 109.68576 * 290.13219 * 16 14 12 33 33 H 1.09001 * 109.68561 * 50.65409 * 16 14 12 34 34 H 1.08996 * 109.25240 * 171.39209 * 17 16 14 35 35 H 1.09000 * 109.24990 * 290.81780 * 17 16 14 36 36 H 1.08007 * 119.72905 * 359.78570 * 19 18 17 37 37 H 1.07998 * 120.11316 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.11592 * 180.09598 * 21 20 19 39 39 H 1.08000 * 119.72762 * 180.02562 * 22 21 20 40 40 H 1.08997 * 109.25819 * 221.92710 * 24 23 18 41 41 H 1.09002 * 109.24837 * 102.50161 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2903 2.0122 -1.1865 5 1 1.9873 3.0382 -1.3344 6 6 2.9558 1.3315 -2.1987 7 7 2.9811 1.8255 -3.4162 8 14 3.8145 -0.2856 -1.8289 9 1 2.8862 -1.4125 -2.1004 10 1 5.0168 -0.4161 -2.6907 11 1 4.2232 -0.3140 -0.4015 12 6 2.2003 2.0317 1.1662 13 8 2.0268 1.4520 2.2175 14 6 2.6194 3.4793 1.1643 15 8 3.6726 3.6741 0.2183 16 6 3.1017 3.8791 2.5637 17 6 3.7395 5.2642 2.4759 18 6 2.8156 6.2298 1.7810 19 6 3.0583 7.5878 1.9430 20 6 2.2511 8.5224 1.3286 21 6 1.1919 8.1050 0.5440 22 6 0.9481 6.7570 0.3833 23 6 1.7580 5.8142 1.0037 24 6 1.4268 4.3595 0.7961 25 1 -0.3633 -1.0239 -0.0872 26 1 -0.3633 0.4365 0.9303 27 1 -0.3633 0.5876 -0.8432 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.4460 1.3505 -4.1227 31 1 3.3774 3.6828 -0.7025 32 1 2.2551 3.9076 3.2496 33 1 3.8375 3.1575 2.9185 34 1 3.9489 5.6279 3.4819 35 1 4.6732 5.1952 1.9178 36 1 3.8862 7.9147 2.5549 37 1 2.4460 9.5766 1.4597 38 1 0.5572 8.8320 0.0591 39 1 0.1208 6.4318 -0.2300 40 1 1.1683 4.1955 -0.2500 41 1 0.5757 4.0919 1.4222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376767765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:50 Heat of formation + Delta-G solvation = -69.302461 kcal Electronic energy + Delta-G solvation = -24278.863167 eV Core-core repulsion = 20930.013505 eV Total energy + Delta-G solvation = -3348.849662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.81586 -40.25276 -37.88007 -37.19715 -34.80592 -34.16579 -33.32688 -31.82614 -30.75676 -29.56031 -26.99102 -25.38532 -24.71050 -23.31422 -22.99766 -21.15447 -20.35135 -19.57435 -18.06086 -17.40431 -17.26922 -17.10594 -16.30640 -15.79878 -15.65307 -15.59168 -15.23735 -15.19870 -14.93772 -14.61822 -14.20113 -13.97078 -13.89902 -13.67488 -13.31496 -13.14317 -13.04212 -12.82952 -12.76303 -12.61642 -12.24762 -12.21022 -11.94896 -11.87897 -11.70655 -11.62508 -11.24389 -11.00336 -10.12996 -9.67970 -9.58182 -9.37422 -8.51738 -6.22340 0.52664 0.55575 1.15623 1.30047 1.40564 1.75373 2.15407 2.53168 2.87332 2.92157 3.46923 3.71160 3.72503 3.91989 4.04031 4.10656 4.13885 4.23157 4.28937 4.35718 4.44212 4.46780 4.54860 4.61685 4.67003 4.78704 4.85704 4.87269 4.95046 5.01472 5.08178 5.20074 5.22526 5.24335 5.39897 5.46715 5.65695 5.68244 5.83300 5.96558 6.18995 6.21123 6.87560 6.89414 7.32966 7.69741 8.58613 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020552 B = 0.005822 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.067317 B = 4808.366210 C = 5111.417516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 N -0.469 5.469 4 C -0.344 4.344 5 H 0.100 0.900 6 C 0.041 3.959 7 N -0.889 5.889 8 Si 0.928 3.072 9 H -0.258 1.258 10 H -0.288 1.288 11 H -0.280 1.280 12 C 0.459 3.541 13 O -0.612 6.612 14 C 0.144 3.856 15 O -0.557 6.557 16 C -0.086 4.086 17 C -0.067 4.067 18 C -0.080 4.080 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.132 4.132 23 C -0.086 4.086 24 C -0.095 4.095 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.281 0.719 31 H 0.391 0.609 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.079 0.921 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 9.342 6.665 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 N -0.191 5.191 4 C -0.471 4.471 5 H 0.117 0.883 6 C -0.164 4.164 7 N -0.526 5.526 8 Si 0.756 3.244 9 H -0.184 1.184 10 H -0.215 1.215 11 H -0.206 1.206 12 C 0.249 3.751 13 O -0.498 6.498 14 C 0.100 3.900 15 O -0.370 6.370 16 C -0.124 4.124 17 C -0.104 4.104 18 C -0.080 4.080 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.146 4.146 22 C -0.150 4.150 23 C -0.086 4.086 24 C -0.133 4.133 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.247 0.753 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.142 0.858 40 H 0.098 0.902 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.955 9.040 7.448 11.875 hybrid contribution 0.043 -1.283 -0.963 1.604 sum -1.912 7.757 6.486 10.291 Atomic orbital electron populations 1.21909 0.93980 1.02830 1.01631 1.21760 0.96598 0.84986 1.00566 1.43891 1.57364 1.12241 1.05558 1.18936 1.37950 0.99901 0.90289 0.88275 1.25750 0.95588 1.00431 0.94659 1.69720 1.40923 1.41090 1.00853 0.86132 0.78782 0.81490 0.78041 1.18398 1.21459 1.20578 1.21804 0.78800 0.91320 0.83222 1.90504 1.57111 1.69949 1.32219 1.20917 0.88415 0.88692 0.91992 1.86352 1.35146 1.94702 1.20830 1.21332 1.01199 0.97395 0.92516 1.20352 0.97570 0.91628 1.00849 1.19780 0.95482 0.95177 0.97558 1.21394 1.00575 0.91613 1.00898 1.21399 0.95100 1.00570 0.97063 1.21328 0.98688 0.95225 0.99343 1.21314 0.99808 0.93734 1.00111 1.19491 0.96599 0.93977 0.98509 1.21008 0.97468 0.92100 1.02694 0.89796 0.93243 0.92492 0.91993 0.92069 0.90945 0.75329 0.90289 0.92006 0.88354 0.90478 0.84050 0.83325 0.83822 0.85849 0.90245 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 10.23 71.98 0.74 -4.56 16 2 C 0.08 3.61 4.76 86.38 0.41 4.02 16 3 N -0.47 -22.11 2.13 -635.53 -1.35 -23.46 16 4 C -0.34 -16.82 6.92 84.04 0.58 -16.24 16 5 H 0.10 4.95 4.53 -2.91 -0.01 4.94 16 6 C 0.04 2.09 5.40 84.93 0.46 2.54 16 7 N -0.89 -46.61 13.96 21.66 0.30 -46.31 16 8 Si 0.93 42.09 24.79 68.60 1.70 43.79 16 9 H -0.26 -10.88 6.69 99.48 0.67 -10.22 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -13.54 7.09 99.48 0.71 -12.84 16 12 C 0.46 21.53 6.64 87.66 0.58 22.11 16 13 O -0.61 -30.71 15.68 -3.08 -0.05 -30.76 16 14 C 0.14 5.85 0.66 -11.52 -0.01 5.84 16 15 O -0.56 -24.32 11.33 -148.98 -1.69 -26.01 16 16 C -0.09 -3.09 4.46 30.62 0.14 -2.95 16 17 C -0.07 -1.98 5.28 29.74 0.16 -1.82 16 18 C -0.08 -2.37 5.68 -19.86 -0.11 -2.49 16 19 C -0.13 -3.05 9.61 22.36 0.21 -2.83 16 20 C -0.12 -2.65 10.05 22.20 0.22 -2.42 16 21 C -0.13 -2.96 10.05 22.20 0.22 -2.73 16 22 C -0.13 -3.71 9.61 22.36 0.21 -3.49 16 23 C -0.09 -2.76 5.62 -19.86 -0.11 -2.87 16 24 C -0.10 -3.45 4.39 29.74 0.13 -3.32 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.06 2.73 7.44 -2.39 -0.02 2.71 16 29 H 0.06 2.67 3.35 -2.39 -0.01 2.66 16 30 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 31 H 0.39 17.79 5.39 -74.06 -0.40 17.39 16 32 H 0.08 2.72 8.10 -2.39 -0.02 2.70 16 33 H 0.06 2.33 8.05 -2.39 -0.02 2.31 16 34 H 0.10 2.28 8.12 -2.39 -0.02 2.26 16 35 H 0.08 2.41 7.73 -2.39 -0.02 2.39 16 36 H 0.14 2.64 8.05 -2.91 -0.02 2.61 16 37 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 39 H 0.12 3.23 8.05 -2.91 -0.02 3.21 16 40 H 0.08 3.05 6.01 -2.39 -0.01 3.04 16 41 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 Total: -1.00 -59.43 319.92 3.36 -56.07 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.61 Total: 37.89 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 3.84 Total: -11.21 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -1.05 Total: -69.76 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -1.74 Total: -56.77 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.70 Total: 43.79 kcal Total: -59.43 3.36 -56.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376767765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.237 kcal (2) G-P(sol) polarization free energy of solvation -59.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds