Wall clock time and date at job start Tue Mar 31 2020 07:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 113.99874 * 2 1 4 4 C 1.53002 * 109.47293 * 180.02562 * 3 2 1 5 5 C 1.53001 * 115.54472 * 30.43526 * 4 3 2 6 6 C 1.50702 * 109.46909 * 65.30332 * 5 4 3 7 7 O 1.21281 * 120.00262 * 5.79603 * 6 5 4 8 8 N 1.34783 * 120.00061 * 185.79407 * 6 5 4 9 9 C 1.39928 * 120.00078 * 174.87478 * 8 6 5 10 10 C 1.39293 * 119.94927 * 325.61167 * 9 8 6 11 11 C 1.38482 * 120.43132 * 179.76271 * 10 9 8 12 12 C 1.37688 * 120.32007 * 0.51653 * 11 10 9 13 13 C 1.40748 * 119.88331 * 359.74662 * 12 11 10 14 14 C 1.41403 * 120.20505 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99954 * 210.99828 * 14 13 12 16 16 C 1.39934 * 120.00381 * 31.00261 * 14 13 12 17 17 N 1.30832 * 120.00092 * 8.01912 * 16 14 13 18 18 Si 1.86803 * 120.00251 * 188.02306 * 16 14 13 19 19 H 1.48505 * 109.47005 * 59.99584 * 18 16 14 20 20 H 1.48492 * 109.47222 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46771 * 299.99909 * 18 16 14 22 22 C 1.38244 * 119.94914 * 145.89531 * 9 8 6 23 23 C 1.52999 * 117.50076 * 244.73420 * 4 3 2 24 24 C 1.52993 * 117.50312 * 176.10770 * 4 3 2 25 25 H 1.09001 * 109.47241 * 299.99562 * 1 2 3 26 26 H 1.09001 * 109.47574 * 59.99783 * 1 2 3 27 27 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47374 * 60.00696 * 3 2 1 29 29 H 1.08998 * 109.47822 * 300.00183 * 3 2 1 30 30 H 1.09002 * 109.46794 * 185.29823 * 5 4 3 31 31 H 1.09000 * 109.47431 * 305.29899 * 5 4 3 32 32 H 0.97005 * 119.99779 * 354.87231 * 8 6 5 33 33 H 1.08002 * 119.78171 * 0.02599 * 10 9 8 34 34 H 1.08003 * 119.84162 * 180.25965 * 11 10 9 35 35 H 1.07999 * 120.05608 * 179.76278 * 12 11 10 36 36 H 0.96998 * 119.99993 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.15664 * 359.95270 * 22 9 8 38 38 H 1.08998 * 117.49969 * 359.97438 * 23 4 3 39 39 H 1.08995 * 117.49834 * 145.01837 * 23 4 3 40 40 H 1.09005 * 117.49971 * 214.98204 * 24 4 3 41 41 H 1.09001 * 117.50237 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0989 -0.0538 -0.7004 6 6 3.7837 0.0140 -2.1725 7 8 3.2626 1.0062 -2.6361 8 7 4.0808 -1.0281 -2.9740 9 6 3.6921 -1.0101 -4.3181 10 6 2.4950 -0.4012 -4.6877 11 6 2.1030 -0.3733 -6.0156 12 6 2.8881 -0.9570 -6.9845 13 6 4.0976 -1.5807 -6.6253 14 6 4.9094 -2.1817 -7.6149 15 1 5.5153 -3.0408 -7.3676 16 6 4.9277 -1.6635 -8.9146 17 7 4.3203 -0.5349 -9.1774 18 14 5.8192 -2.5831 -10.2744 19 1 5.2201 -3.9325 -10.4346 20 1 5.6902 -1.8304 -11.5479 21 1 7.2553 -2.7177 -9.9216 22 6 4.4938 -1.6017 -5.2764 23 6 4.2859 1.7061 1.2264 24 6 4.3465 2.4786 -0.0929 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 5.1795 -0.0894 -0.5615 31 1 3.6480 -0.9494 -0.2730 32 1 4.5642 -1.7906 -2.6191 33 1 1.8706 0.0558 -3.9342 34 1 1.1750 0.1051 -6.2920 35 1 2.5764 -0.9360 -8.0183 36 1 4.3327 -0.1758 -10.0784 37 1 5.4203 -2.0773 -4.9903 38 1 3.6931 2.1356 2.0340 39 1 5.1813 1.1669 1.5354 40 1 5.2819 2.4476 -0.6518 41 1 3.7936 3.4160 -0.1535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401326453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:07 Heat of formation + Delta-G solvation = -39.163143 kcal Electronic energy + Delta-G solvation = -22616.813796 eV Core-core repulsion = 19269.271072 eV Total energy + Delta-G solvation = -3347.542723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.94191 -38.45002 -37.09405 -36.52336 -34.25723 -32.97623 -29.96107 -29.75506 -28.22883 -27.28379 -25.46605 -25.16550 -22.51493 -21.79657 -20.90315 -19.82260 -18.99754 -17.50277 -16.71136 -16.33343 -16.00977 -15.71167 -15.45517 -14.98739 -14.68609 -14.32668 -14.25807 -13.55750 -13.45747 -13.10225 -12.80725 -12.50277 -12.20735 -11.97062 -11.71082 -11.60880 -11.55203 -11.12799 -11.11070 -10.98823 -10.87324 -10.47360 -10.38416 -10.14768 -10.06235 -9.60132 -9.46990 -9.27341 -9.10668 -8.79018 -7.37323 -6.83902 -6.59295 -4.33498 2.70367 2.87501 3.10727 3.13399 3.23171 3.44129 3.49983 3.74314 3.95157 4.01478 4.62649 4.74920 4.77228 4.89009 4.94290 5.20482 5.30133 5.35856 5.41173 5.54303 5.58155 5.64019 5.71433 5.82582 5.84148 5.90105 6.01749 6.07734 6.34169 6.60104 6.85049 6.97512 7.08188 7.11721 7.15722 7.32626 7.68226 7.74528 8.05627 8.09750 8.21592 8.39642 8.67109 8.83093 8.96291 9.03330 10.32938 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.003412 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.384276 B = 8204.961571 C = 8609.144980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.102 3.898 4 C -0.101 4.101 5 C -0.097 4.097 6 C 0.513 3.487 7 O -0.519 6.519 8 N -0.672 5.672 9 C 0.152 3.848 10 C -0.217 4.217 11 C -0.100 4.100 12 C -0.159 4.159 13 C 0.121 3.879 14 C -0.469 4.469 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.807 5.807 18 Si 0.911 3.089 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.239 4.239 23 C -0.175 4.175 24 C -0.155 4.155 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.398 0.602 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.279 0.721 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 1.498 16.662 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.305 6.305 3 C 0.025 3.975 4 C -0.102 4.102 5 C -0.137 4.137 6 C 0.300 3.700 7 O -0.395 6.395 8 N -0.316 5.316 9 C 0.060 3.940 10 C -0.239 4.239 11 C -0.119 4.119 12 C -0.179 4.179 13 C 0.119 3.881 14 C -0.500 4.500 15 H 0.093 0.907 16 C -0.142 4.142 17 N -0.433 5.433 18 Si 0.736 3.264 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.261 4.261 23 C -0.212 4.212 24 C -0.192 4.192 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.232 0.768 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.138 0.862 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.383 2.229 16.172 16.498 hybrid contribution 0.524 -0.431 -0.511 0.849 sum -1.859 1.798 15.661 15.873 Atomic orbital electron populations 1.22693 0.81152 1.02634 0.99772 1.87824 1.19474 1.27796 1.95388 1.21962 0.90555 0.84755 1.00182 1.20885 0.92563 0.95580 1.01142 1.21058 1.01483 0.98936 0.92207 1.20469 0.78747 0.82777 0.88038 1.90673 1.41727 1.30947 1.76109 1.43516 1.57673 1.20590 1.09785 1.17439 0.94142 1.01064 0.81308 1.20328 0.97378 1.10147 0.96001 1.20611 0.98594 0.99797 0.92923 1.21410 0.94754 1.03026 0.98732 1.17376 0.90753 0.89532 0.90484 1.19444 1.23485 1.13442 0.93596 0.90716 1.25845 0.94605 0.94177 0.99593 1.69789 1.35533 1.15989 1.22034 0.86326 0.80345 0.80241 0.79456 1.19006 1.20446 1.19182 1.20801 0.99725 1.12180 0.93352 1.23211 1.02484 1.03957 0.91555 1.22956 1.01810 0.95139 0.99325 0.94501 0.93924 0.89734 0.93717 0.91703 0.89315 0.87967 0.76811 0.88157 0.89147 0.86230 0.91050 0.88727 0.88731 0.88598 0.88415 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.39 -5.28 9.51 -35.23 -0.34 -5.62 16 3 C 0.10 1.31 5.46 37.16 0.20 1.52 16 4 C -0.10 -1.25 1.51 -154.51 -0.23 -1.48 16 5 C -0.10 -1.25 5.12 -27.88 -0.14 -1.39 16 6 C 0.51 9.09 7.38 -10.98 -0.08 9.01 16 7 O -0.52 -11.07 12.72 5.56 0.07 -11.00 16 8 N -0.67 -12.35 5.33 -9.91 -0.05 -12.41 16 9 C 0.15 3.53 6.25 -83.77 -0.52 3.00 16 10 C -0.22 -5.30 8.66 -39.10 -0.34 -5.64 16 11 C -0.10 -2.49 10.02 -39.69 -0.40 -2.89 16 12 C -0.16 -4.27 8.64 -38.83 -0.34 -4.61 16 13 C 0.12 3.29 5.53 -106.85 -0.59 2.70 16 14 C -0.47 -12.60 9.06 -37.74 -0.34 -12.95 16 15 H 0.07 1.91 7.86 -52.49 -0.41 1.50 16 16 C 0.07 1.89 5.29 -17.34 -0.09 1.80 16 17 N -0.81 -21.51 10.85 55.55 0.60 -20.91 16 18 Si 0.91 19.08 29.57 -169.99 -5.03 14.05 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 C -0.24 -5.90 9.70 -38.69 -0.38 -6.28 16 23 C -0.18 -1.66 9.87 -26.73 -0.26 -1.92 16 24 C -0.16 -1.77 9.86 -26.73 -0.26 -2.03 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.48 7.88 -51.93 -0.41 0.07 16 29 H 0.06 0.97 7.52 -51.93 -0.39 0.58 16 30 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 31 H 0.10 1.23 7.53 -51.93 -0.39 0.84 16 32 H 0.40 5.85 8.82 -40.82 -0.36 5.49 16 33 H 0.10 2.42 6.47 -52.49 -0.34 2.08 16 34 H 0.09 2.03 8.06 -52.48 -0.42 1.61 16 35 H 0.12 3.29 6.29 -52.49 -0.33 2.96 16 36 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 37 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.09 0.78 8.03 -51.93 -0.42 0.37 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -31.37 344.40 -8.20 -39.57 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.99 Total: 10.80 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -2.66 Total: -19.68 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.55 Total: -33.32 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.26 Total: -16.61 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.37 -8.20 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401326453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.406 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds