Wall clock time and date at job start Tue Mar 31 2020 07:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 113.99874 * 2 1 4 4 C 1.53002 * 109.47293 * 180.02562 * 3 2 1 5 5 C 1.53001 * 115.54472 * 30.43526 * 4 3 2 6 6 C 1.50702 * 109.46909 * 65.30332 * 5 4 3 7 7 O 1.21281 * 120.00262 * 5.79603 * 6 5 4 8 8 N 1.34783 * 120.00061 * 185.79407 * 6 5 4 9 9 C 1.39928 * 120.00078 * 174.87478 * 8 6 5 10 10 C 1.39293 * 119.94927 * 325.61167 * 9 8 6 11 11 C 1.38482 * 120.43132 * 179.76271 * 10 9 8 12 12 C 1.37688 * 120.32007 * 0.51653 * 11 10 9 13 13 C 1.40748 * 119.88331 * 359.74662 * 12 11 10 14 14 C 1.41403 * 120.20505 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99954 * 210.99828 * 14 13 12 16 16 C 1.39934 * 120.00381 * 31.00261 * 14 13 12 17 17 N 1.30832 * 120.00092 * 8.01912 * 16 14 13 18 18 Si 1.86803 * 120.00251 * 188.02306 * 16 14 13 19 19 H 1.48505 * 109.47005 * 59.99584 * 18 16 14 20 20 H 1.48492 * 109.47222 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46771 * 299.99909 * 18 16 14 22 22 C 1.38244 * 119.94914 * 145.89531 * 9 8 6 23 23 C 1.52999 * 117.50076 * 244.73420 * 4 3 2 24 24 C 1.52993 * 117.50312 * 176.10770 * 4 3 2 25 25 H 1.09001 * 109.47241 * 299.99562 * 1 2 3 26 26 H 1.09001 * 109.47574 * 59.99783 * 1 2 3 27 27 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47374 * 60.00696 * 3 2 1 29 29 H 1.08998 * 109.47822 * 300.00183 * 3 2 1 30 30 H 1.09002 * 109.46794 * 185.29823 * 5 4 3 31 31 H 1.09000 * 109.47431 * 305.29899 * 5 4 3 32 32 H 0.97005 * 119.99779 * 354.87231 * 8 6 5 33 33 H 1.08002 * 119.78171 * 0.02599 * 10 9 8 34 34 H 1.08003 * 119.84162 * 180.25965 * 11 10 9 35 35 H 1.07999 * 120.05608 * 179.76278 * 12 11 10 36 36 H 0.96998 * 119.99993 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.15664 * 359.95270 * 22 9 8 38 38 H 1.08998 * 117.49969 * 359.97438 * 23 4 3 39 39 H 1.08995 * 117.49834 * 145.01837 * 23 4 3 40 40 H 1.09005 * 117.49971 * 214.98204 * 24 4 3 41 41 H 1.09001 * 117.50237 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0989 -0.0538 -0.7004 6 6 3.7837 0.0140 -2.1725 7 8 3.2626 1.0062 -2.6361 8 7 4.0808 -1.0281 -2.9740 9 6 3.6921 -1.0101 -4.3181 10 6 2.4950 -0.4012 -4.6877 11 6 2.1030 -0.3733 -6.0156 12 6 2.8881 -0.9570 -6.9845 13 6 4.0976 -1.5807 -6.6253 14 6 4.9094 -2.1817 -7.6149 15 1 5.5153 -3.0408 -7.3676 16 6 4.9277 -1.6635 -8.9146 17 7 4.3203 -0.5349 -9.1774 18 14 5.8192 -2.5831 -10.2744 19 1 5.2201 -3.9325 -10.4346 20 1 5.6902 -1.8304 -11.5479 21 1 7.2553 -2.7177 -9.9216 22 6 4.4938 -1.6017 -5.2764 23 6 4.2859 1.7061 1.2264 24 6 4.3465 2.4786 -0.0929 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 5.1795 -0.0894 -0.5615 31 1 3.6480 -0.9494 -0.2730 32 1 4.5642 -1.7906 -2.6191 33 1 1.8706 0.0558 -3.9342 34 1 1.1750 0.1051 -6.2920 35 1 2.5764 -0.9360 -8.0183 36 1 4.3327 -0.1758 -10.0784 37 1 5.4203 -2.0773 -4.9903 38 1 3.6931 2.1356 2.0340 39 1 5.1813 1.1669 1.5354 40 1 5.2819 2.4476 -0.6518 41 1 3.7936 3.4160 -0.1535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401326453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:07 Heat of formation + Delta-G solvation = -57.814503 kcal Electronic energy + Delta-G solvation = -22617.622579 eV Core-core repulsion = 19269.271072 eV Total energy + Delta-G solvation = -3348.351507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.32973 -39.71142 -38.68435 -37.55607 -36.01495 -34.80747 -31.75710 -31.26946 -29.46462 -28.59339 -27.15641 -26.37991 -23.50921 -23.25480 -22.80126 -21.43909 -20.11904 -19.31373 -18.06305 -17.46991 -17.27810 -17.04982 -16.79662 -16.59880 -16.38713 -15.78435 -15.23865 -15.03705 -14.84092 -14.51452 -14.39894 -14.06332 -13.55776 -13.45987 -13.16410 -12.87217 -12.80416 -12.75278 -12.54144 -12.33872 -12.25173 -11.98365 -11.90471 -11.41600 -11.32104 -11.15104 -11.01443 -10.88504 -10.59447 -10.26230 -9.36963 -8.72670 -8.51460 -6.37919 0.90364 0.97593 1.40274 1.52419 1.52948 1.91534 2.21403 2.28270 2.75278 2.80779 2.97869 3.69765 3.73338 3.81707 4.00445 4.04289 4.16577 4.39205 4.42949 4.49570 4.53515 4.63153 4.66522 4.80558 4.81774 4.87163 4.90196 5.00612 5.05529 5.06922 5.12355 5.18053 5.24051 5.27696 5.36585 5.78556 5.85682 6.10239 6.11404 6.22458 6.32622 6.66558 6.76856 6.95153 7.00249 7.41557 8.41686 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.003412 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.384276 B = 8204.961571 C = 8609.144980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.404 6.404 3 C 0.103 3.897 4 C -0.128 4.128 5 C -0.085 4.085 6 C 0.509 3.491 7 O -0.558 6.558 8 N -0.666 5.666 9 C 0.163 3.837 10 C -0.229 4.229 11 C -0.103 4.103 12 C -0.186 4.186 13 C 0.094 3.906 14 C -0.500 4.500 15 H 0.080 0.920 16 C 0.030 3.970 17 N -0.840 5.840 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.259 1.259 22 C -0.250 4.250 23 C -0.140 4.140 24 C -0.169 4.169 25 H 0.059 0.941 26 H 0.029 0.971 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.418 0.582 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.285 0.715 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 0.787 18.577 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.323 6.323 3 C 0.027 3.973 4 C -0.129 4.129 5 C -0.124 4.124 6 C 0.298 3.702 7 O -0.435 6.435 8 N -0.312 5.312 9 C 0.070 3.930 10 C -0.250 4.250 11 C -0.122 4.122 12 C -0.206 4.206 13 C 0.092 3.908 14 C -0.531 4.531 15 H 0.098 0.902 16 C -0.183 4.183 17 N -0.467 5.467 18 Si 0.809 3.191 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.184 1.184 22 C -0.271 4.271 23 C -0.176 4.176 24 C -0.207 4.207 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.255 0.745 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.109 0.891 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.144 1.504 18.137 18.236 hybrid contribution 0.079 -0.140 -1.010 1.023 sum -1.065 1.364 17.127 17.215 Atomic orbital electron populations 1.22842 0.80075 1.03575 1.00248 1.87779 1.20801 1.28275 1.95464 1.21948 0.91268 0.84458 0.99667 1.20995 0.92310 0.95693 1.03855 1.21075 1.03440 0.99972 0.87914 1.21466 0.77270 0.81603 0.89859 1.90662 1.43246 1.32447 1.77178 1.43525 1.57827 1.21875 1.07990 1.17479 0.93108 0.99005 0.83452 1.20439 0.98155 1.10692 0.95714 1.20822 0.99016 0.99262 0.93052 1.21331 0.95743 1.05217 0.98343 1.17765 0.91087 0.90079 0.91918 1.19772 1.24324 1.14182 0.94797 0.90159 1.26793 0.95118 0.94699 1.01719 1.69880 1.36509 1.17342 1.22970 0.85162 0.79083 0.78847 0.76010 1.18252 1.19588 1.18356 1.20971 1.00581 1.12678 0.92899 1.23304 1.02274 1.01556 0.90484 1.22989 1.01370 0.94936 1.01366 0.92226 0.95241 0.88625 0.91478 0.94967 0.86355 0.86614 0.74522 0.88176 0.87505 0.87837 0.90442 0.87124 0.87064 0.86612 0.89087 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.84 16 2 O -0.40 -10.54 9.51 -148.98 -1.42 -11.96 16 3 C 0.10 2.54 5.46 71.98 0.39 2.94 16 4 C -0.13 -2.88 1.51 -52.18 -0.08 -2.96 16 5 C -0.08 -1.96 5.12 29.85 0.15 -1.81 16 6 C 0.51 17.52 7.38 87.66 0.65 18.17 16 7 O -0.56 -23.94 12.72 -3.03 -0.04 -23.98 16 8 N -0.67 -23.79 5.33 -303.65 -1.62 -25.40 16 9 C 0.16 7.57 6.25 38.10 0.24 7.81 16 10 C -0.23 -11.35 8.66 22.58 0.20 -11.16 16 11 C -0.10 -5.26 10.02 22.20 0.22 -5.04 16 12 C -0.19 -10.38 8.64 22.75 0.20 -10.18 16 13 C 0.09 5.25 5.53 -21.31 -0.12 5.13 16 14 C -0.50 -27.37 9.06 23.46 0.21 -27.16 16 15 H 0.08 4.14 7.86 -2.91 -0.02 4.11 16 16 C 0.03 1.53 5.29 85.25 0.45 1.98 16 17 N -0.84 -45.79 10.85 21.82 0.24 -45.55 16 18 Si 0.99 38.98 29.57 68.60 2.03 41.01 16 19 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 20 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 C -0.25 -12.43 9.70 22.85 0.22 -12.21 16 23 C -0.14 -2.12 9.87 30.59 0.30 -1.82 16 24 C -0.17 -3.58 9.86 30.59 0.30 -3.27 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.30 7.88 -2.39 -0.02 1.28 16 29 H 0.03 0.99 7.52 -2.39 -0.02 0.97 16 30 H 0.12 2.06 8.09 -2.39 -0.02 2.04 16 31 H 0.12 2.42 7.53 -2.39 -0.02 2.41 16 32 H 0.42 11.46 8.82 -92.70 -0.82 10.65 16 33 H 0.10 4.94 6.47 -2.91 -0.02 4.92 16 34 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 35 H 0.10 5.99 6.29 -2.91 -0.02 5.97 16 36 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 37 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 38 H 0.11 1.36 8.03 -2.39 -0.02 1.34 16 39 H 0.12 1.34 8.14 -2.39 -0.02 1.33 16 40 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -69.86 344.40 3.99 -65.87 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: 0.22 Total: 37.76 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 4.59 Total: -37.75 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -1.38 Total: -70.96 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.46 Total: -35.93 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -69.86 3.99 -65.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401326453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.055 kcal (2) G-P(sol) polarization free energy of solvation -69.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds