Wall clock time and date at job start Tue Mar 31 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47274 * 2 1 4 4 C 1.35645 * 117.00313 * 179.97438 * 3 2 1 5 5 C 1.38718 * 120.15104 * 0.25437 * 4 3 2 6 6 C 1.38056 * 120.08577 * 180.25698 * 5 4 3 7 7 C 1.38548 * 120.38798 * 359.74339 * 6 5 4 8 8 C 1.37790 * 120.30445 * 359.97438 * 7 6 5 9 9 C 1.39711 * 119.90626 * 0.02562 * 8 7 6 10 10 C 1.47531 * 120.18869 * 179.97438 * 9 8 7 11 11 O 1.21592 * 119.99833 * 174.47345 * 10 9 8 12 12 N 1.34772 * 120.00185 * 354.74261 * 10 9 8 13 13 C 1.46498 * 120.00123 * 184.58790 * 12 10 9 14 14 C 1.52998 * 109.47506 * 185.06767 * 13 12 10 15 15 C 1.50703 * 115.54689 * 56.03660 * 14 13 12 16 16 H 1.08004 * 119.99743 * 267.73291 * 15 14 13 17 17 C 1.37868 * 120.00100 * 87.73121 * 15 14 13 18 18 N 1.31520 * 120.00052 * 179.07060 * 17 15 14 19 19 Si 1.86802 * 120.00284 * 359.08240 * 17 15 14 20 20 H 1.48497 * 109.47539 * 91.45974 * 19 17 15 21 21 H 1.48497 * 109.47220 * 211.46525 * 19 17 15 22 22 H 1.48508 * 109.46751 * 331.45972 * 19 17 15 23 23 C 1.52998 * 117.50176 * 270.36973 * 14 13 12 24 24 C 1.52996 * 117.50418 * 201.70484 * 14 13 12 25 25 H 1.08994 * 109.47363 * 300.00065 * 1 2 3 26 26 H 1.08996 * 109.47241 * 60.00371 * 1 2 3 27 27 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46961 * 239.99390 * 2 1 3 29 29 H 1.08998 * 109.46926 * 120.00334 * 2 1 3 30 30 H 1.07994 * 119.95354 * 359.97438 * 5 4 3 31 31 H 1.07997 * 119.80573 * 179.76205 * 6 5 4 32 32 H 1.07999 * 119.84742 * 180.02562 * 7 6 5 33 33 H 1.07996 * 120.04629 * 179.97438 * 8 7 6 34 34 H 0.97001 * 120.00244 * 4.59833 * 12 10 9 35 35 H 1.09004 * 109.47649 * 305.07354 * 13 12 10 36 36 H 1.09010 * 109.46606 * 65.06920 * 13 12 10 37 37 H 0.97002 * 119.99549 * 180.02562 * 18 17 15 38 38 H 1.08996 * 117.49879 * 359.97438 * 23 14 13 39 39 H 1.08994 * 117.50306 * 145.01677 * 23 14 13 40 40 H 1.09001 * 117.50223 * 214.98089 * 24 14 13 41 41 H 1.08997 * 117.49623 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.1991 0.4271 -0.0043 6 6 5.5675 0.6096 0.0017 7 6 6.1042 1.8869 0.0071 8 6 5.2769 2.9887 0.0060 9 6 3.8902 2.8186 0.0001 10 6 2.9985 3.9939 -0.0005 11 8 1.7965 3.8450 -0.1070 12 7 3.5167 5.2330 0.1117 13 6 2.6272 6.3926 0.2124 14 6 3.4595 7.6764 0.2016 15 6 4.3728 7.8489 -0.9847 16 1 5.3950 7.5039 -0.9339 17 6 3.9034 8.4470 -2.1348 18 7 4.7056 8.6141 -3.1636 19 14 2.1283 9.0205 -2.2318 20 1 2.0409 10.4366 -1.7934 21 1 1.6466 8.9051 -3.6317 22 1 1.2861 8.1756 -1.3473 23 6 3.9422 8.2168 1.5491 24 6 2.8230 8.9361 0.7921 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 3.7881 -0.5716 -0.0080 31 1 6.2234 -0.2484 0.0018 32 1 7.1760 2.0195 0.0112 33 1 5.6997 3.9824 0.0107 34 1 4.4787 5.3570 0.1257 35 1 1.9400 6.3981 -0.6337 36 1 2.0595 6.3355 1.1412 37 1 4.3754 9.0353 -3.9726 38 1 3.6665 7.6580 2.4434 39 1 4.9201 8.6974 1.5776 40 1 3.0651 9.8897 0.3228 41 1 1.8111 8.8504 1.1879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404108348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:24 Heat of formation + Delta-G solvation = -23.698382 kcal Electronic energy + Delta-G solvation = -22847.938887 eV Core-core repulsion = 19501.066766 eV Total energy + Delta-G solvation = -3346.872121 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39515 -38.67341 -37.37234 -36.85690 -33.39314 -32.11665 -32.02922 -31.06569 -29.52972 -26.70176 -25.27847 -24.18525 -22.99270 -21.70672 -21.61533 -19.86036 -19.32286 -18.30347 -16.99736 -16.37523 -16.15001 -15.89573 -15.07458 -14.88623 -14.79857 -14.50335 -14.30824 -13.69278 -13.36721 -13.33189 -12.79474 -12.73573 -12.67384 -12.40812 -12.12755 -11.99043 -11.87408 -11.57352 -11.14140 -11.05350 -10.81293 -10.71749 -10.48922 -10.16202 -9.65800 -9.28631 -9.13884 -9.03316 -8.62440 -8.56184 -8.27608 -8.06426 -6.14493 -4.19101 0.98039 1.41487 3.18046 3.25590 3.30683 3.41315 3.47207 3.80225 4.08237 4.42326 4.68002 4.76499 4.81432 4.90508 4.95830 5.07545 5.12139 5.15532 5.25096 5.39864 5.42574 5.67452 5.71283 5.71672 5.84539 5.98745 6.03658 6.09958 6.19034 6.25933 6.28954 6.43688 6.44693 6.57769 6.70811 6.73457 7.01185 7.09921 7.23791 7.44434 7.69766 8.29306 8.41671 8.84520 8.91106 9.49154 10.96683 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.004542 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.240330 B = 6163.331922 C = 6716.674216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.278 6.278 4 C 0.182 3.818 5 C -0.226 4.226 6 C -0.060 4.060 7 C -0.168 4.168 8 C -0.044 4.044 9 C -0.162 4.162 10 C 0.550 3.450 11 O -0.537 6.537 12 N -0.698 5.698 13 C 0.157 3.843 14 C -0.016 4.016 15 C -0.490 4.490 16 H 0.078 0.922 17 C 0.082 3.918 18 N -0.895 5.895 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.294 1.294 22 H -0.256 1.256 23 C -0.179 4.179 24 C -0.193 4.193 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.265 0.735 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -16.679 7.830 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.189 6.189 4 C 0.134 3.866 5 C -0.244 4.244 6 C -0.079 4.079 7 C -0.186 4.186 8 C -0.063 4.063 9 C -0.166 4.166 10 C 0.337 3.663 11 O -0.415 6.415 12 N -0.349 5.349 13 C 0.033 3.967 14 C -0.018 4.018 15 C -0.527 4.527 16 H 0.096 0.904 17 C -0.122 4.122 18 N -0.532 5.532 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.221 1.221 22 H -0.180 1.180 23 C -0.216 4.216 24 C -0.231 4.231 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.238 0.762 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.742 -16.542 7.572 18.276 hybrid contribution -0.273 0.250 -0.270 0.458 sum -2.015 -16.292 7.303 17.967 Atomic orbital electron populations 1.21729 0.92663 1.02262 1.04051 1.22840 0.96328 0.82571 1.00931 1.86403 1.17882 1.27955 1.86655 1.19021 0.83028 0.92670 0.91916 1.21183 0.94401 0.97761 1.11092 1.21059 0.94183 0.97429 0.95189 1.20991 1.00157 0.92129 1.05358 1.21337 0.91285 0.99949 0.93708 1.19549 0.93802 0.91604 1.11668 1.17951 0.87762 0.82949 0.77671 1.90767 1.14859 1.86067 1.49818 1.45717 1.11063 1.05212 1.72895 1.21099 0.91679 0.84238 0.99660 1.19633 0.98222 0.89844 0.94066 1.20148 0.97558 1.40158 0.94852 0.90397 1.24950 0.97380 0.94623 0.95217 1.69885 1.35780 1.43092 1.04399 0.86872 0.85937 0.79527 0.77060 1.20466 1.22089 1.17999 1.22872 0.98357 1.05036 0.95363 1.22931 0.96193 0.98169 1.05820 0.91411 0.91285 0.90721 0.92197 0.92280 0.85219 0.85639 0.85311 0.84414 0.76184 0.91621 0.93959 0.92505 0.90878 0.89411 0.89180 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 37.16 0.38 -1.09 16 2 C 0.05 0.53 5.46 37.16 0.20 0.74 16 3 O -0.28 -4.52 8.23 -40.43 -0.33 -4.85 16 4 C 0.18 2.83 6.70 -38.69 -0.26 2.57 16 5 C -0.23 -2.69 9.03 -39.47 -0.36 -3.04 16 6 C -0.06 -0.64 10.03 -39.53 -0.40 -1.03 16 7 C -0.17 -1.94 10.02 -39.63 -0.40 -2.33 16 8 C -0.04 -0.62 9.53 -39.20 -0.37 -0.99 16 9 C -0.16 -2.76 5.89 -104.84 -0.62 -3.38 16 10 C 0.55 11.25 7.75 -12.47 -0.10 11.16 16 11 O -0.54 -12.64 15.16 -16.51 -0.25 -12.89 16 12 N -0.70 -14.04 5.31 -61.35 -0.33 -14.37 16 13 C 0.16 3.43 5.34 -4.04 -0.02 3.41 16 14 C -0.02 -0.37 0.93 -155.66 -0.14 -0.51 16 15 C -0.49 -12.89 8.88 -34.44 -0.31 -13.20 16 16 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 17 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 18 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 19 Si 0.88 21.78 24.88 -169.99 -4.23 17.55 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 22 H -0.26 -6.15 5.62 56.52 0.32 -5.83 16 23 C -0.18 -3.46 9.93 -26.69 -0.27 -3.73 16 24 C -0.19 -4.01 7.56 -26.69 -0.20 -4.21 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 29 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 30 H 0.13 1.19 6.30 -52.49 -0.33 0.86 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.14 1.81 6.42 -52.49 -0.34 1.47 16 34 H 0.40 7.44 6.23 -40.82 -0.25 7.19 16 35 H 0.07 1.60 6.51 -51.93 -0.34 1.26 16 36 H 0.04 0.87 8.10 -51.92 -0.42 0.45 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.09 1.95 7.16 -51.93 -0.37 1.58 16 41 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -32.74 337.55 -8.10 -40.84 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.87 Total: 7.89 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -2.95 Total: -13.47 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.45 Total: -40.17 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.58 Total: -17.74 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.23 Total: 17.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.74 -8.10 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404108348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.144 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds