Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47274 * 2 1 4 4 C 1.35645 * 117.00313 * 179.97438 * 3 2 1 5 5 C 1.38718 * 120.15104 * 0.25437 * 4 3 2 6 6 C 1.38056 * 120.08577 * 180.25698 * 5 4 3 7 7 C 1.38548 * 120.38798 * 359.74339 * 6 5 4 8 8 C 1.37790 * 120.30445 * 359.97438 * 7 6 5 9 9 C 1.39711 * 119.90626 * 0.02562 * 8 7 6 10 10 C 1.47531 * 120.18869 * 179.97438 * 9 8 7 11 11 O 1.21592 * 119.99833 * 174.47345 * 10 9 8 12 12 N 1.34772 * 120.00185 * 354.74261 * 10 9 8 13 13 C 1.46498 * 120.00123 * 184.58790 * 12 10 9 14 14 C 1.52998 * 109.47506 * 185.06767 * 13 12 10 15 15 C 1.50703 * 115.54689 * 56.03660 * 14 13 12 16 16 H 1.08004 * 119.99743 * 267.73291 * 15 14 13 17 17 C 1.37868 * 120.00100 * 87.73121 * 15 14 13 18 18 N 1.31520 * 120.00052 * 179.07060 * 17 15 14 19 19 Si 1.86802 * 120.00284 * 359.08240 * 17 15 14 20 20 H 1.48497 * 109.47539 * 91.45974 * 19 17 15 21 21 H 1.48497 * 109.47220 * 211.46525 * 19 17 15 22 22 H 1.48508 * 109.46751 * 331.45972 * 19 17 15 23 23 C 1.52998 * 117.50176 * 270.36973 * 14 13 12 24 24 C 1.52996 * 117.50418 * 201.70484 * 14 13 12 25 25 H 1.08994 * 109.47363 * 300.00065 * 1 2 3 26 26 H 1.08996 * 109.47241 * 60.00371 * 1 2 3 27 27 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46961 * 239.99390 * 2 1 3 29 29 H 1.08998 * 109.46926 * 120.00334 * 2 1 3 30 30 H 1.07994 * 119.95354 * 359.97438 * 5 4 3 31 31 H 1.07997 * 119.80573 * 179.76205 * 6 5 4 32 32 H 1.07999 * 119.84742 * 180.02562 * 7 6 5 33 33 H 1.07996 * 120.04629 * 179.97438 * 8 7 6 34 34 H 0.97001 * 120.00244 * 4.59833 * 12 10 9 35 35 H 1.09004 * 109.47649 * 305.07354 * 13 12 10 36 36 H 1.09010 * 109.46606 * 65.06920 * 13 12 10 37 37 H 0.97002 * 119.99549 * 180.02562 * 18 17 15 38 38 H 1.08996 * 117.49879 * 359.97438 * 23 14 13 39 39 H 1.08994 * 117.50306 * 145.01677 * 23 14 13 40 40 H 1.09001 * 117.50223 * 214.98089 * 24 14 13 41 41 H 1.08997 * 117.49623 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.1991 0.4271 -0.0043 6 6 5.5675 0.6096 0.0017 7 6 6.1042 1.8869 0.0071 8 6 5.2769 2.9887 0.0060 9 6 3.8902 2.8186 0.0001 10 6 2.9985 3.9939 -0.0005 11 8 1.7965 3.8450 -0.1070 12 7 3.5167 5.2330 0.1117 13 6 2.6272 6.3926 0.2124 14 6 3.4595 7.6764 0.2016 15 6 4.3728 7.8489 -0.9847 16 1 5.3950 7.5039 -0.9339 17 6 3.9034 8.4470 -2.1348 18 7 4.7056 8.6141 -3.1636 19 14 2.1283 9.0205 -2.2318 20 1 2.0409 10.4366 -1.7934 21 1 1.6466 8.9051 -3.6317 22 1 1.2861 8.1756 -1.3473 23 6 3.9422 8.2168 1.5491 24 6 2.8230 8.9361 0.7921 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 3.7881 -0.5716 -0.0080 31 1 6.2234 -0.2484 0.0018 32 1 7.1760 2.0195 0.0112 33 1 5.6997 3.9824 0.0107 34 1 4.4787 5.3570 0.1257 35 1 1.9400 6.3981 -0.6337 36 1 2.0595 6.3355 1.1412 37 1 4.3754 9.0353 -3.9726 38 1 3.6665 7.6580 2.4434 39 1 4.9201 8.6974 1.5776 40 1 3.0651 9.8897 0.3228 41 1 1.8111 8.8504 1.1879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404108348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = -44.345470 kcal Electronic energy + Delta-G solvation = -22848.834212 eV Core-core repulsion = 19501.066766 eV Total energy + Delta-G solvation = -3347.767446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54252 -40.12126 -38.69149 -38.28072 -35.02386 -34.22521 -32.92270 -32.12618 -30.52074 -28.42709 -27.19983 -25.11525 -24.17258 -23.33278 -22.57078 -21.32370 -21.04093 -19.52435 -18.47122 -17.99833 -17.22012 -17.10999 -16.87595 -16.18396 -16.11272 -15.90187 -15.57760 -15.20135 -14.81238 -14.52558 -14.34741 -14.18435 -14.10433 -13.77089 -13.39588 -13.10763 -12.91580 -12.89261 -12.63839 -12.52270 -12.19393 -12.00986 -11.96625 -11.65921 -11.59087 -11.01163 -10.87780 -10.64671 -10.34778 -10.11074 -9.80721 -9.19543 -8.30991 -6.36403 -0.09549 0.43245 1.30799 1.37727 1.48095 1.96188 2.24672 2.31736 2.35429 2.88949 3.04920 3.23262 3.76676 3.81096 4.01383 4.03696 4.04217 4.19981 4.26227 4.35430 4.36150 4.39036 4.44703 4.51530 4.52763 4.77449 4.85519 4.86337 4.90889 4.91058 5.08665 5.15247 5.24739 5.28329 5.35121 5.48467 5.48899 5.59585 5.69871 5.80376 6.27518 6.46927 6.69866 6.75798 7.33638 7.35972 8.83372 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.004542 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.240330 B = 6163.331922 C = 6716.674216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.039 3.961 3 O -0.316 6.316 4 C 0.164 3.836 5 C -0.221 4.221 6 C -0.044 4.044 7 C -0.165 4.165 8 C -0.053 4.053 9 C -0.202 4.202 10 C 0.545 3.455 11 O -0.579 6.579 12 N -0.699 5.699 13 C 0.165 3.835 14 C -0.043 4.043 15 C -0.475 4.475 16 H 0.050 0.950 17 C 0.029 3.971 18 N -0.942 5.942 19 Si 0.925 3.075 20 H -0.264 1.264 21 H -0.304 1.304 22 H -0.246 1.246 23 C -0.150 4.150 24 C -0.192 4.192 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.408 0.592 35 H 0.034 0.966 36 H 0.056 0.944 37 H 0.264 0.736 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -18.912 9.567 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 O -0.229 6.229 4 C 0.116 3.884 5 C -0.239 4.239 6 C -0.061 4.061 7 C -0.183 4.183 8 C -0.071 4.071 9 C -0.206 4.206 10 C 0.334 3.666 11 O -0.460 6.460 12 N -0.349 5.349 13 C 0.041 3.959 14 C -0.044 4.044 15 C -0.513 4.513 16 H 0.068 0.932 17 C -0.169 4.169 18 N -0.581 5.581 19 Si 0.751 3.249 20 H -0.189 1.189 21 H -0.232 1.232 22 H -0.169 1.169 23 C -0.187 4.187 24 C -0.230 4.230 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.178 0.822 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.154 0.846 34 H 0.245 0.755 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.108 -18.774 9.340 20.999 hybrid contribution -0.365 0.805 -0.772 1.174 sum -1.473 -17.969 8.568 19.962 Atomic orbital electron populations 1.21781 0.92343 1.04002 1.02446 1.23181 0.96707 0.80896 1.02765 1.86358 1.18646 1.31032 1.86867 1.19320 0.83448 0.93167 0.92507 1.21551 0.94677 0.97942 1.09730 1.21606 0.94146 0.98401 0.91992 1.21382 1.01346 0.91727 1.03857 1.21431 0.90452 1.01114 0.94145 1.19464 0.94468 0.90927 1.15731 1.18592 0.87853 0.83796 0.76344 1.90720 1.16736 1.86707 1.51868 1.45710 1.11157 1.05042 1.73005 1.20883 0.91483 0.84604 0.98962 1.19474 0.99319 0.91050 0.94528 1.20322 0.96937 1.37995 0.96050 0.93227 1.25641 1.00577 0.95469 0.95207 1.70004 1.37534 1.45396 1.05191 0.86111 0.82249 0.79982 0.76562 1.18870 1.23205 1.16943 1.22909 0.98055 1.03316 0.94463 1.22998 0.97927 0.96573 1.05478 0.92725 0.93161 0.87231 0.90492 0.90004 0.82155 0.81267 0.82346 0.84615 0.75507 0.94782 0.92538 0.92718 0.87943 0.89285 0.90171 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 10.28 71.98 0.74 -2.08 16 2 C 0.04 0.80 5.46 71.98 0.39 1.19 16 3 O -0.32 -10.39 8.23 -68.75 -0.57 -10.96 16 4 C 0.16 5.01 6.70 22.85 0.15 5.16 16 5 C -0.22 -4.57 9.03 22.34 0.20 -4.36 16 6 C -0.04 -0.73 10.03 22.30 0.22 -0.51 16 7 C -0.17 -3.30 10.02 22.24 0.22 -3.08 16 8 C -0.05 -1.45 9.53 22.52 0.21 -1.23 16 9 C -0.20 -6.96 5.89 -20.01 -0.12 -7.08 16 10 C 0.55 23.16 7.75 86.69 0.67 23.83 16 11 O -0.58 -28.57 15.16 16.84 0.26 -28.31 16 12 N -0.70 -28.84 5.31 -466.27 -2.48 -31.32 16 13 C 0.16 7.25 5.34 86.38 0.46 7.72 16 14 C -0.04 -1.88 0.93 -52.93 -0.05 -1.93 16 15 C -0.48 -25.51 8.88 25.60 0.23 -25.28 16 16 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16 17 C 0.03 1.68 5.47 84.65 0.46 2.14 16 18 N -0.94 -57.79 13.96 21.44 0.30 -57.49 16 19 Si 0.92 45.48 24.88 68.60 1.71 47.18 16 20 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 22 H -0.25 -11.60 5.62 99.48 0.56 -11.04 16 23 C -0.15 -5.48 9.93 30.62 0.30 -5.17 16 24 C -0.19 -7.58 7.56 30.62 0.23 -7.35 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.28 7.65 -2.39 -0.02 1.26 16 29 H 0.08 1.27 7.67 -2.39 -0.02 1.25 16 30 H 0.16 2.24 6.30 -2.91 -0.02 2.22 16 31 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.14 3.61 6.42 -2.91 -0.02 3.59 16 34 H 0.41 15.56 6.23 -92.71 -0.58 14.98 16 35 H 0.03 1.70 6.51 -2.39 -0.02 1.68 16 36 H 0.06 2.30 8.10 -2.38 -0.02 2.28 16 37 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.10 3.17 8.14 -2.39 -0.02 3.16 16 39 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.08 3.34 7.16 -2.39 -0.02 3.32 16 41 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -75.11 337.55 3.87 -71.24 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.31 Total: 27.71 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 4.34 Total: -18.05 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -2.18 Total: -88.81 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.31 Total: -39.27 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.71 Total: 47.18 kcal Total: -75.11 3.87 -71.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404108348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.893 kcal (2) G-P(sol) polarization free energy of solvation -75.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds