Wall clock time and date at job start Tue Mar 31 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99455 * 2 1 4 4 C 1.38753 * 120.05854 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.94381 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05901 * 359.74818 * 5 4 3 7 7 C 1.38248 * 120.10906 * 0.50694 * 6 5 4 8 8 C 1.50700 * 119.97567 * 179.77151 * 7 6 5 9 9 C 1.50706 * 109.46942 * 269.72222 * 8 7 6 10 10 O 1.21281 * 119.99517 * 359.97438 * 9 8 7 11 11 N 1.34767 * 120.00101 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00271 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47186 * 178.28418 * 12 11 9 14 14 C 1.50701 * 115.54931 * 65.14589 * 13 12 11 15 15 H 1.07994 * 120.00024 * 265.40044 * 14 13 12 16 16 C 1.37878 * 119.99677 * 85.40322 * 14 13 12 17 17 N 1.31507 * 120.00540 * 353.55464 * 16 14 13 18 18 Si 1.86806 * 119.99853 * 173.55294 * 16 14 13 19 19 H 1.48500 * 109.46923 * 90.00022 * 18 16 14 20 20 H 1.48501 * 109.47363 * 209.99975 * 18 16 14 21 21 H 1.48496 * 109.46889 * 330.00104 * 18 16 14 22 22 C 1.53004 * 117.49999 * 279.47486 * 13 12 11 23 23 C 1.53001 * 117.49677 * 210.81489 * 13 12 11 24 24 C 1.38168 * 120.05456 * 359.48907 * 7 6 5 25 25 H 1.08993 * 109.47612 * 300.00005 * 1 2 3 26 26 H 1.09001 * 109.47078 * 60.00605 * 1 2 3 27 27 H 1.09007 * 109.46818 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.02444 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.97354 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.95202 * 180.27572 * 6 5 4 31 31 H 1.08999 * 109.46949 * 29.72010 * 8 7 6 32 32 H 1.08992 * 109.47313 * 149.72354 * 8 7 6 33 33 H 0.97001 * 119.99885 * 0.02562 * 11 9 8 34 34 H 1.08994 * 109.47454 * 298.28711 * 12 11 9 35 35 H 1.09003 * 109.46613 * 58.29052 * 12 11 9 36 36 H 0.97004 * 120.00752 * 185.07080 * 17 16 14 37 37 H 1.08992 * 117.49794 * 0.02562 * 22 13 12 38 38 H 1.08999 * 117.49856 * 145.02177 * 22 13 12 39 39 H 1.09002 * 117.49697 * 214.98246 * 23 13 12 40 40 H 1.09000 * 117.50324 * 359.97438 * 23 13 12 41 41 H 1.07998 * 120.03083 * 180.23081 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3754 0.0005 5 6 1.9206 3.6048 0.0011 6 6 3.3017 3.6759 0.0063 7 6 4.0558 2.5173 0.0005 8 6 5.5607 2.5984 0.0010 9 6 6.0627 2.6258 -1.4197 10 8 5.2760 2.5831 -2.3417 11 7 7.3858 2.6977 -1.6655 12 6 7.8740 2.7237 -3.0466 13 6 9.3988 2.8499 -3.0462 14 6 10.1476 1.6800 -2.4619 15 1 10.4478 1.6946 -1.4246 16 6 10.4496 0.5909 -3.2517 17 7 9.9765 0.5153 -4.4764 18 14 11.5308 -0.7774 -2.5821 19 1 10.6813 -1.8028 -1.9249 20 1 12.2869 -1.4017 -3.6974 21 1 12.4838 -0.2153 -1.5916 22 6 9.9922 4.2445 -2.8365 23 6 10.0466 3.5890 -4.2188 24 6 3.4310 1.2849 0.0000 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 0.2126 2.3203 0.0014 29 1 1.3337 4.5114 0.0019 30 1 3.7920 4.6382 0.0112 31 1 5.8754 3.5065 0.5152 32 1 5.9712 1.7292 0.5147 33 1 8.0150 2.7314 -0.9280 34 1 7.5858 1.8017 -3.5513 35 1 7.4391 3.5755 -3.5695 36 1 10.1272 -0.2832 -5.0063 37 1 9.2964 5.0719 -2.6984 38 1 10.9245 4.3157 -2.2763 39 1 11.0147 3.2293 -4.5673 40 1 9.3867 3.9850 -4.9907 41 1 4.0206 0.3801 -0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404150870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:06 Heat of formation + Delta-G solvation = -32.337672 kcal Electronic energy + Delta-G solvation = -22163.554163 eV Core-core repulsion = 18816.307414 eV Total energy + Delta-G solvation = -3347.246749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22634 -39.05653 -37.45315 -36.58130 -33.23499 -32.50054 -31.97215 -30.50948 -28.09523 -27.29097 -25.89775 -24.89272 -22.55032 -21.47911 -21.14092 -19.71194 -19.27189 -17.79121 -16.64956 -16.32941 -16.06556 -15.95714 -15.77755 -14.99698 -14.85175 -14.58282 -13.97104 -13.87072 -13.61162 -13.18760 -13.10233 -12.70234 -12.39875 -12.16998 -12.03479 -11.65803 -11.51736 -11.38158 -11.11659 -11.00288 -10.93372 -10.83049 -10.52925 -10.27555 -9.66522 -9.35072 -8.96820 -8.76013 -8.50165 -8.26992 -8.16867 -8.05760 -6.08175 -4.17173 1.33520 1.50364 3.18821 3.24990 3.25735 3.33723 3.35226 3.67057 4.11166 4.35249 4.70764 4.75392 4.95560 4.98592 5.03743 5.19580 5.24660 5.27140 5.29334 5.35285 5.49301 5.54065 5.64749 5.76904 6.02849 6.06634 6.29748 6.33463 6.43107 6.46915 6.57336 6.63960 6.68786 6.76203 6.90179 7.09124 7.30294 7.37788 7.43643 7.48666 7.80797 8.32135 8.33685 8.83370 8.92354 9.49850 10.99582 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019983 B = 0.003483 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.865326 B = 8036.662424 C = 8876.695045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.213 4.213 5 C -0.082 4.082 6 C -0.142 4.142 7 C -0.016 4.016 8 C -0.107 4.107 9 C 0.505 3.495 10 O -0.549 6.549 11 N -0.704 5.704 12 C 0.164 3.836 13 C 0.028 3.972 14 C -0.502 4.502 15 H 0.060 0.940 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.211 4.211 23 C -0.149 4.149 24 C -0.136 4.136 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.400 0.600 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.636 3.931 10.951 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.232 4.232 5 C -0.100 4.100 6 C -0.161 4.161 7 C -0.017 4.017 8 C -0.147 4.147 9 C 0.290 3.710 10 O -0.427 6.427 11 N -0.353 5.353 12 C 0.041 3.959 13 C 0.028 3.972 14 C -0.539 4.539 15 H 0.078 0.922 16 C -0.130 4.130 17 N -0.510 5.510 18 Si 0.717 3.283 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.248 4.248 23 C -0.187 4.187 24 C -0.154 4.154 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.234 0.766 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.042 3.609 10.061 18.453 hybrid contribution 0.638 -0.692 0.470 1.052 sum -14.404 2.917 10.531 18.079 Atomic orbital electron populations 1.23017 0.78717 1.03715 1.01187 1.86077 1.21122 1.27109 1.88900 1.18933 0.92207 0.84038 0.96806 1.21145 0.99669 0.92495 1.09867 1.20831 0.94473 0.96823 0.97852 1.20893 0.93742 0.97887 1.03550 1.19104 0.94080 0.92422 0.96096 1.20733 0.92361 1.05257 0.96312 1.20289 0.82917 0.77359 0.90432 1.90690 1.55497 1.50354 1.46161 1.45970 1.05975 1.72786 1.10570 1.20979 0.94294 1.00305 0.80340 1.19032 0.89587 0.89752 0.98869 1.20338 1.36216 1.01013 0.96378 0.92167 1.24987 0.95385 0.98087 0.94552 1.69971 1.44313 1.27788 1.08903 0.86636 0.80898 0.82142 0.78616 1.20631 1.21166 1.19803 1.23022 1.02340 0.97561 1.01867 1.22493 1.02185 1.03939 0.90055 1.20257 0.91348 0.98248 1.05595 0.92849 0.92721 0.88423 0.85829 0.85954 0.86024 0.87995 0.87861 0.76608 0.91030 0.94576 0.92823 0.91663 0.90359 0.89832 0.91698 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.15 10.50 -19.44 -0.20 -4.36 16 3 C 0.12 1.74 6.69 -39.22 -0.26 1.48 16 4 C -0.21 -2.56 9.04 -39.44 -0.36 -2.92 16 5 C -0.08 -0.97 10.04 -39.61 -0.40 -1.36 16 6 C -0.14 -1.86 9.70 -39.56 -0.38 -2.25 16 7 C -0.02 -0.24 4.37 -104.64 -0.46 -0.69 16 8 C -0.11 -1.43 5.83 -29.03 -0.17 -1.60 16 9 C 0.51 9.31 7.82 -10.99 -0.09 9.22 16 10 O -0.55 -12.39 16.03 5.56 0.09 -12.30 16 11 N -0.70 -13.42 5.47 -60.30 -0.33 -13.75 16 12 C 0.16 3.72 5.50 -4.04 -0.02 3.70 16 13 C 0.03 0.66 1.38 -155.66 -0.21 0.45 16 14 C -0.50 -12.80 8.63 -34.44 -0.30 -13.10 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 17 N -0.87 -24.29 12.91 55.43 0.72 -23.57 16 18 Si 0.89 20.47 29.55 -169.99 -5.02 15.44 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.21 -4.33 9.96 -26.69 -0.27 -4.59 16 23 C -0.15 -3.39 9.42 -26.69 -0.25 -3.64 16 24 C -0.14 -2.02 9.64 -39.43 -0.38 -2.40 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 26 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.12 1.15 6.30 -52.48 -0.33 0.82 16 29 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 32 H 0.10 1.20 8.08 -51.93 -0.42 0.79 16 33 H 0.40 6.81 8.36 -40.82 -0.34 6.47 16 34 H 0.07 1.89 8.14 -51.93 -0.42 1.46 16 35 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 39 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 40 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -31.55 352.41 -8.17 -39.72 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.08 Total: 8.12 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -2.65 Total: -14.61 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.39 Total: -37.32 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.11 Total: -16.66 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.55 -8.17 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404150870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.381 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds