Wall clock time and date at job start Tue Mar 31 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99455 * 2 1 4 4 C 1.38753 * 120.05854 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.94381 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05901 * 359.74818 * 5 4 3 7 7 C 1.38248 * 120.10906 * 0.50694 * 6 5 4 8 8 C 1.50700 * 119.97567 * 179.77151 * 7 6 5 9 9 C 1.50706 * 109.46942 * 269.72222 * 8 7 6 10 10 O 1.21281 * 119.99517 * 359.97438 * 9 8 7 11 11 N 1.34767 * 120.00101 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00271 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47186 * 178.28418 * 12 11 9 14 14 C 1.50701 * 115.54931 * 65.14589 * 13 12 11 15 15 H 1.07994 * 120.00024 * 265.40044 * 14 13 12 16 16 C 1.37878 * 119.99677 * 85.40322 * 14 13 12 17 17 N 1.31507 * 120.00540 * 353.55464 * 16 14 13 18 18 Si 1.86806 * 119.99853 * 173.55294 * 16 14 13 19 19 H 1.48500 * 109.46923 * 90.00022 * 18 16 14 20 20 H 1.48501 * 109.47363 * 209.99975 * 18 16 14 21 21 H 1.48496 * 109.46889 * 330.00104 * 18 16 14 22 22 C 1.53004 * 117.49999 * 279.47486 * 13 12 11 23 23 C 1.53001 * 117.49677 * 210.81489 * 13 12 11 24 24 C 1.38168 * 120.05456 * 359.48907 * 7 6 5 25 25 H 1.08993 * 109.47612 * 300.00005 * 1 2 3 26 26 H 1.09001 * 109.47078 * 60.00605 * 1 2 3 27 27 H 1.09007 * 109.46818 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.02444 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.97354 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.95202 * 180.27572 * 6 5 4 31 31 H 1.08999 * 109.46949 * 29.72010 * 8 7 6 32 32 H 1.08992 * 109.47313 * 149.72354 * 8 7 6 33 33 H 0.97001 * 119.99885 * 0.02562 * 11 9 8 34 34 H 1.08994 * 109.47454 * 298.28711 * 12 11 9 35 35 H 1.09003 * 109.46613 * 58.29052 * 12 11 9 36 36 H 0.97004 * 120.00752 * 185.07080 * 17 16 14 37 37 H 1.08992 * 117.49794 * 0.02562 * 22 13 12 38 38 H 1.08999 * 117.49856 * 145.02177 * 22 13 12 39 39 H 1.09002 * 117.49697 * 214.98246 * 23 13 12 40 40 H 1.09000 * 117.50324 * 359.97438 * 23 13 12 41 41 H 1.07998 * 120.03083 * 180.23081 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3754 0.0005 5 6 1.9206 3.6048 0.0011 6 6 3.3017 3.6759 0.0063 7 6 4.0558 2.5173 0.0005 8 6 5.5607 2.5984 0.0010 9 6 6.0627 2.6258 -1.4197 10 8 5.2760 2.5831 -2.3417 11 7 7.3858 2.6977 -1.6655 12 6 7.8740 2.7237 -3.0466 13 6 9.3988 2.8499 -3.0462 14 6 10.1476 1.6800 -2.4619 15 1 10.4478 1.6946 -1.4246 16 6 10.4496 0.5909 -3.2517 17 7 9.9765 0.5153 -4.4764 18 14 11.5308 -0.7774 -2.5821 19 1 10.6813 -1.8028 -1.9249 20 1 12.2869 -1.4017 -3.6974 21 1 12.4838 -0.2153 -1.5916 22 6 9.9922 4.2445 -2.8365 23 6 10.0466 3.5890 -4.2188 24 6 3.4310 1.2849 0.0000 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 0.2126 2.3203 0.0014 29 1 1.3337 4.5114 0.0019 30 1 3.7920 4.6382 0.0112 31 1 5.8754 3.5065 0.5152 32 1 5.9712 1.7292 0.5147 33 1 8.0150 2.7314 -0.9280 34 1 7.5858 1.8017 -3.5513 35 1 7.4391 3.5755 -3.5695 36 1 10.1272 -0.2832 -5.0063 37 1 9.2964 5.0719 -2.6984 38 1 10.9245 4.3157 -2.2763 39 1 11.0147 3.2293 -4.5673 40 1 9.3867 3.9850 -4.9907 41 1 4.0206 0.3801 -0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404150870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:06 Heat of formation + Delta-G solvation = -51.605273 kcal Electronic energy + Delta-G solvation = -22164.389669 eV Core-core repulsion = 18816.307414 eV Total energy + Delta-G solvation = -3348.082255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24979 -40.44678 -38.67642 -38.13021 -34.89204 -33.96824 -33.54302 -31.44450 -29.31940 -28.14071 -27.65732 -26.56510 -23.51830 -22.99094 -22.44744 -21.33304 -20.91149 -18.83080 -18.22867 -17.69355 -17.27349 -16.94823 -16.67506 -16.62231 -16.50112 -16.14041 -15.48454 -15.04632 -14.81034 -14.54848 -14.29005 -14.15215 -13.72723 -13.47071 -13.39060 -12.94699 -12.87983 -12.83693 -12.68485 -12.44785 -12.32980 -12.03235 -11.95605 -11.73962 -11.48571 -10.92844 -10.83393 -10.45357 -10.06117 -9.79990 -9.74985 -9.12694 -8.09187 -6.22478 0.34463 0.52381 1.42782 1.45511 1.53763 1.79108 2.32604 2.42395 2.47347 2.91145 3.19370 3.52306 3.70404 3.89526 4.11381 4.17359 4.24827 4.29453 4.36368 4.38942 4.43817 4.55099 4.57451 4.66213 4.66812 4.71752 4.74722 4.82938 5.00880 5.04910 5.11576 5.28216 5.34275 5.48752 5.59820 5.62333 5.65256 5.71186 5.79309 5.84821 6.37575 6.48263 6.81431 6.86998 7.44988 7.47679 8.98327 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019983 B = 0.003483 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.865326 B = 8036.662424 C = 8876.695045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.110 3.890 4 C -0.213 4.213 5 C -0.082 4.082 6 C -0.154 4.154 7 C -0.034 4.034 8 C -0.095 4.095 9 C 0.504 3.496 10 O -0.594 6.594 11 N -0.699 5.699 12 C 0.180 3.820 13 C 0.006 3.994 14 C -0.505 4.505 15 H 0.067 0.933 16 C 0.024 3.976 17 N -0.909 5.909 18 Si 0.949 3.051 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.262 1.262 22 C -0.174 4.174 23 C -0.163 4.163 24 C -0.165 4.165 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.121 0.879 33 H 0.412 0.588 34 H 0.024 0.976 35 H 0.033 0.967 36 H 0.258 0.742 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 5.226 13.113 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.065 3.935 4 C -0.231 4.231 5 C -0.100 4.100 6 C -0.172 4.172 7 C -0.035 4.035 8 C -0.134 4.134 9 C 0.291 3.709 10 O -0.476 6.476 11 N -0.349 5.349 12 C 0.056 3.944 13 C 0.006 3.994 14 C -0.542 4.542 15 H 0.085 0.915 16 C -0.177 4.177 17 N -0.547 5.547 18 Si 0.776 3.224 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.186 1.186 22 C -0.211 4.211 23 C -0.201 4.201 24 C -0.184 4.184 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.134 0.866 28 H 0.169 0.831 29 H 0.172 0.828 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.139 0.861 33 H 0.248 0.752 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.746 4.912 12.271 20.558 hybrid contribution 0.759 -1.086 -0.208 1.341 sum -14.987 3.826 12.063 19.615 Atomic orbital electron populations 1.23332 0.76429 1.05458 1.02298 1.86043 1.23603 1.27128 1.88894 1.19147 0.92245 0.85074 0.97071 1.21495 1.01072 0.91907 1.08676 1.21261 0.94400 0.97972 0.96374 1.21214 0.94560 0.98131 1.03312 1.19266 0.94534 0.92722 0.96938 1.20739 0.92048 1.07870 0.92725 1.21164 0.82003 0.75509 0.92186 1.90666 1.56487 1.52189 1.48228 1.45857 1.06759 1.72906 1.09382 1.20510 0.94099 0.97724 0.82083 1.19050 0.89587 0.90970 0.99841 1.20692 1.35443 1.01500 0.96593 0.91530 1.25721 0.96637 1.00505 0.94842 1.70107 1.46068 1.28292 1.10230 0.85687 0.79331 0.79511 0.77909 1.20616 1.21716 1.18566 1.23009 1.02567 0.96244 0.99239 1.22435 1.01290 1.05145 0.91228 1.20409 0.92306 0.98356 1.07346 0.91125 0.92079 0.86555 0.83112 0.82835 0.84342 0.84330 0.86109 0.75185 0.95741 0.94851 0.93305 0.89176 0.89426 0.91876 0.91330 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.83 10.50 -92.47 -0.97 -9.80 16 3 C 0.11 3.01 6.69 22.51 0.15 3.16 16 4 C -0.21 -4.72 9.04 22.36 0.20 -4.51 16 5 C -0.08 -1.74 10.04 22.25 0.22 -1.52 16 6 C -0.15 -3.73 9.70 22.28 0.22 -3.51 16 7 C -0.03 -0.94 4.37 -19.88 -0.09 -1.03 16 8 C -0.09 -2.38 5.83 29.10 0.17 -2.21 16 9 C 0.50 18.35 7.82 87.66 0.69 19.03 16 10 O -0.59 -27.32 16.03 -3.03 -0.05 -27.37 16 11 N -0.70 -26.22 5.47 -463.07 -2.54 -28.76 16 12 C 0.18 8.31 5.50 86.38 0.48 8.79 16 13 C 0.01 0.29 1.38 -52.93 -0.07 0.22 16 14 C -0.50 -25.54 8.63 25.60 0.22 -25.32 16 15 H 0.07 3.21 7.82 -2.91 -0.02 3.19 16 16 C 0.02 1.25 5.39 84.66 0.46 1.70 16 17 N -0.91 -51.92 12.91 21.45 0.28 -51.64 16 18 Si 0.95 42.19 29.55 68.60 2.03 44.22 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 22 C -0.17 -6.76 9.96 30.62 0.30 -6.46 16 23 C -0.16 -7.42 9.42 30.62 0.29 -7.13 16 24 C -0.17 -4.98 9.64 22.37 0.22 -4.76 16 25 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 26 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 27 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.15 2.37 6.30 -2.91 -0.02 2.35 16 29 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.14 2.45 8.08 -2.39 -0.02 2.43 16 32 H 0.12 2.62 8.08 -2.39 -0.02 2.60 16 33 H 0.41 13.34 8.36 -92.71 -0.78 12.57 16 34 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.03 1.53 8.09 -2.39 -0.02 1.51 16 36 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 37 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -70.18 352.41 3.56 -66.62 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.25 Total: 28.90 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 4.56 Total: -22.16 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -2.26 Total: -80.40 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.02 Total: -37.18 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -70.18 3.56 -66.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404150870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.011 kcal (2) G-P(sol) polarization free energy of solvation -70.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds