Wall clock time and date at job start Tue Mar 31 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99456 * 2 1 4 4 C 1.38752 * 120.05897 * 0.02840 * 3 2 1 5 5 C 1.38120 * 119.94684 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05525 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.10963 * 359.74877 * 6 5 4 8 8 C 1.38163 * 120.05574 * 0.50529 * 7 6 5 9 9 C 1.50708 * 120.02818 * 179.77155 * 8 7 6 10 10 H 1.08998 * 115.55795 * 154.04210 * 9 8 7 11 11 C 1.52998 * 117.49970 * 8.34575 * 9 8 7 12 12 C 1.52996 * 60.00016 * 252.51260 * 11 9 8 13 13 H 1.09004 * 117.49832 * 107.51440 * 12 11 9 14 14 C 1.50700 * 117.50075 * 252.50841 * 12 11 9 15 15 O 1.21285 * 119.99926 * 68.60684 * 14 12 11 16 16 N 1.34780 * 120.00400 * 248.61208 * 14 12 11 17 17 C 1.46496 * 119.99526 * 359.97438 * 16 14 12 18 18 C 1.46491 * 120.00021 * 179.97438 * 16 14 12 19 19 C 1.50702 * 109.46957 * 269.99631 * 18 16 14 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 16 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 16 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 H 1.08994 * 109.47602 * 60.00284 * 1 2 3 28 28 H 1.09008 * 109.46788 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47202 * 299.99341 * 1 2 3 30 30 H 1.07997 * 120.02576 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.97436 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.94901 * 180.02562 * 6 5 4 33 33 H 1.08004 * 119.97184 * 180.25646 * 7 6 5 34 34 H 1.08993 * 117.49985 * 145.02098 * 11 9 8 35 35 H 1.09007 * 117.50021 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.47583 * 270.00032 * 17 16 14 37 37 H 1.09005 * 109.47610 * 30.00505 * 17 16 14 38 38 H 1.09006 * 109.46979 * 150.00041 * 17 16 14 39 39 H 1.09004 * 109.47166 * 149.99897 * 18 16 14 40 40 H 1.08994 * 109.47507 * 29.99603 * 18 16 14 41 41 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0006 5 6 1.9206 3.6048 0.0011 6 6 3.3017 3.6759 0.0016 7 6 4.0558 2.5173 0.0068 8 6 3.4310 1.2850 0.0010 9 6 4.2538 0.0223 0.0014 10 1 3.7678 -0.8554 0.4275 11 6 5.7635 0.1629 0.2054 12 6 5.2084 -0.1993 -1.1735 13 1 5.2417 0.5681 -1.9469 14 6 5.4049 -1.6143 -1.6531 15 8 4.8168 -2.5257 -1.1105 16 7 6.2344 -1.8672 -2.6849 17 6 6.9445 -0.7662 -3.3405 18 6 6.4259 -3.2428 -3.1507 19 6 7.5732 -3.8713 -2.4025 20 1 8.1061 -3.3030 -1.6545 21 6 7.9385 -5.1740 -2.6684 22 7 7.2893 -5.8661 -3.5789 23 14 9.3557 -5.9555 -1.7356 24 1 9.0501 -5.9583 -0.2823 25 1 9.5467 -7.3516 -2.2043 26 1 10.5973 -5.1780 -1.9788 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2127 2.3203 0.0006 31 1 1.3337 4.5113 0.0020 32 1 3.7920 4.6382 0.0024 33 1 5.1342 2.5755 0.0113 34 1 6.2710 -0.6222 0.7657 35 1 6.1618 1.1687 0.3397 36 1 6.3384 -0.3797 -4.1598 37 1 7.1284 0.0290 -2.6180 38 1 7.8952 -1.1288 -3.7316 39 1 6.6475 -3.2375 -4.2179 40 1 5.5171 -3.8170 -2.9711 41 1 7.5466 -6.7825 -3.7663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411181900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:30 Heat of formation + Delta-G solvation = -17.959608 kcal Electronic energy + Delta-G solvation = -22537.407844 eV Core-core repulsion = 19190.784575 eV Total energy + Delta-G solvation = -3346.623269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49802 -39.16420 -37.61681 -36.07822 -34.63217 -32.53509 -30.85113 -30.23509 -27.97332 -27.34506 -25.84517 -24.35065 -23.75494 -22.19433 -21.72981 -20.36547 -18.26252 -18.21380 -16.80317 -16.44747 -16.06477 -15.81889 -15.67108 -15.20126 -14.60681 -14.45383 -14.30623 -13.95002 -13.73704 -13.14195 -12.92000 -12.50436 -12.18767 -12.10657 -12.06710 -11.92314 -11.65345 -11.40771 -11.23204 -11.14957 -10.94733 -10.84625 -10.63023 -10.44195 -10.20238 -10.11160 -9.59011 -8.96751 -8.76370 -8.39363 -8.13533 -7.56257 -6.00119 -4.04813 1.15200 1.32191 3.22371 3.23370 3.34692 3.38788 3.42151 3.59811 3.99976 4.27379 4.47904 4.59109 4.68052 4.87627 4.93082 5.01734 5.04089 5.09622 5.15007 5.30398 5.33378 5.38018 5.40313 5.48931 5.50068 5.76217 5.84436 5.89931 6.01159 6.13119 6.16035 6.25524 6.28923 6.36455 6.58786 6.65862 7.12493 7.32716 7.50033 7.61451 7.96722 8.28343 8.50336 8.95067 9.18778 9.60135 11.07935 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.003521 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.277526 B = 7951.209451 C = 8393.331407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C 0.137 3.863 4 C -0.209 4.209 5 C -0.088 4.088 6 C -0.157 4.157 7 C -0.084 4.084 8 C -0.077 4.077 9 C -0.080 4.080 10 H 0.129 0.871 11 C -0.149 4.149 12 C -0.169 4.169 13 H 0.117 0.883 14 C 0.533 3.467 15 O -0.539 6.539 16 N -0.600 5.600 17 C 0.085 3.915 18 C 0.246 3.754 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.060 3.940 22 N -0.896 5.896 23 Si 0.898 3.102 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.042 0.958 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.975 20.396 5.862 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.218 6.218 3 C 0.091 3.909 4 C -0.228 4.228 5 C -0.106 4.106 6 C -0.175 4.175 7 C -0.102 4.102 8 C -0.078 4.078 9 C -0.098 4.098 10 H 0.147 0.853 11 C -0.186 4.186 12 C -0.191 4.191 13 H 0.135 0.865 14 C 0.319 3.681 15 O -0.416 6.416 16 N -0.331 5.331 17 C -0.059 4.059 18 C 0.126 3.874 19 C -0.565 4.565 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.202 19.494 6.019 22.811 hybrid contribution 0.569 -0.245 0.286 0.683 sum -9.633 19.249 6.305 22.429 Atomic orbital electron populations 1.23068 0.78645 1.04156 1.00934 1.86208 1.21046 1.26369 1.88130 1.18845 0.91637 0.84445 0.95952 1.21204 0.99933 0.92319 1.09343 1.20892 0.94711 0.96802 0.98219 1.21001 0.93875 0.98215 1.04391 1.20938 1.00212 0.90928 0.98087 1.18578 0.90096 0.94224 1.04855 1.20841 0.90635 0.96959 1.01386 0.85318 1.23087 0.95612 1.02893 0.96995 1.22447 1.06225 0.97468 0.92920 0.86475 1.19367 0.79742 0.88494 0.80487 1.90662 1.48450 1.46270 1.56259 1.48045 1.42875 1.09852 1.32367 1.21619 0.97480 0.89972 0.96824 1.19279 0.97843 0.75631 0.94607 1.21417 1.15543 0.97861 1.21646 0.92500 1.24943 0.97013 0.96879 0.95313 1.69930 1.40771 1.10335 1.32439 0.86555 0.82281 0.78203 0.80351 1.20173 1.21189 1.20252 0.92772 0.88085 0.92863 0.85528 0.86022 0.85950 0.85116 0.87712 0.87987 0.93964 0.92293 0.90870 0.95032 0.93872 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.30 -4.29 9.68 -19.43 -0.19 -4.47 16 3 C 0.14 1.82 6.66 -39.22 -0.26 1.56 16 4 C -0.21 -2.22 9.04 -39.43 -0.36 -2.57 16 5 C -0.09 -0.83 10.04 -39.61 -0.40 -1.22 16 6 C -0.16 -1.49 10.04 -39.56 -0.40 -1.89 16 7 C -0.08 -0.92 9.30 -39.61 -0.37 -1.29 16 8 C -0.08 -1.04 5.62 -104.47 -0.59 -1.63 16 9 C -0.08 -1.25 5.26 -91.77 -0.48 -1.73 16 10 H 0.13 2.36 7.29 -51.93 -0.38 1.98 16 11 C -0.15 -2.08 9.56 -26.73 -0.26 -2.34 16 12 C -0.17 -2.78 4.44 -91.77 -0.41 -3.19 16 13 H 0.12 1.66 7.26 -51.93 -0.38 1.28 16 14 C 0.53 11.84 7.46 -10.98 -0.08 11.75 16 15 O -0.54 -14.36 15.84 5.55 0.09 -14.27 16 16 N -0.60 -13.42 2.86 -182.96 -0.52 -13.94 16 17 C 0.09 1.43 10.01 59.84 0.60 2.03 16 18 C 0.25 6.68 5.16 -5.20 -0.03 6.65 16 19 C -0.53 -15.32 9.39 -34.44 -0.32 -15.64 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 23 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 28 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.13 1.20 6.02 -52.48 -0.32 0.89 16 34 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.10 1.09 6.17 -51.93 -0.32 0.76 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.82 6.64 -51.93 -0.34 0.47 16 38 H 0.07 1.24 8.07 -51.93 -0.42 0.83 16 39 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 40 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -35.24 344.99 -7.91 -43.15 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.75 Total: 0.16 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.45 Total: -6.60 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.21 Total: -40.37 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.10 Total: -18.74 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.24 -7.91 -43.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411181900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.186 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds