Wall clock time and date at job start Tue Mar 31 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99456 * 2 1 4 4 C 1.38752 * 120.05897 * 0.02840 * 3 2 1 5 5 C 1.38120 * 119.94684 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05525 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.10963 * 359.74877 * 6 5 4 8 8 C 1.38163 * 120.05574 * 0.50529 * 7 6 5 9 9 C 1.50708 * 120.02818 * 179.77155 * 8 7 6 10 10 H 1.08998 * 115.55795 * 154.04210 * 9 8 7 11 11 C 1.52998 * 117.49970 * 8.34575 * 9 8 7 12 12 C 1.52996 * 60.00016 * 252.51260 * 11 9 8 13 13 H 1.09004 * 117.49832 * 107.51440 * 12 11 9 14 14 C 1.50700 * 117.50075 * 252.50841 * 12 11 9 15 15 O 1.21285 * 119.99926 * 68.60684 * 14 12 11 16 16 N 1.34780 * 120.00400 * 248.61208 * 14 12 11 17 17 C 1.46496 * 119.99526 * 359.97438 * 16 14 12 18 18 C 1.46491 * 120.00021 * 179.97438 * 16 14 12 19 19 C 1.50702 * 109.46957 * 269.99631 * 18 16 14 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 16 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 16 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 H 1.08994 * 109.47602 * 60.00284 * 1 2 3 28 28 H 1.09008 * 109.46788 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47202 * 299.99341 * 1 2 3 30 30 H 1.07997 * 120.02576 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.97436 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.94901 * 180.02562 * 6 5 4 33 33 H 1.08004 * 119.97184 * 180.25646 * 7 6 5 34 34 H 1.08993 * 117.49985 * 145.02098 * 11 9 8 35 35 H 1.09007 * 117.50021 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.47583 * 270.00032 * 17 16 14 37 37 H 1.09005 * 109.47610 * 30.00505 * 17 16 14 38 38 H 1.09006 * 109.46979 * 150.00041 * 17 16 14 39 39 H 1.09004 * 109.47166 * 149.99897 * 18 16 14 40 40 H 1.08994 * 109.47507 * 29.99603 * 18 16 14 41 41 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0006 5 6 1.9206 3.6048 0.0011 6 6 3.3017 3.6759 0.0016 7 6 4.0558 2.5173 0.0068 8 6 3.4310 1.2850 0.0010 9 6 4.2538 0.0223 0.0014 10 1 3.7678 -0.8554 0.4275 11 6 5.7635 0.1629 0.2054 12 6 5.2084 -0.1993 -1.1735 13 1 5.2417 0.5681 -1.9469 14 6 5.4049 -1.6143 -1.6531 15 8 4.8168 -2.5257 -1.1105 16 7 6.2344 -1.8672 -2.6849 17 6 6.9445 -0.7662 -3.3405 18 6 6.4259 -3.2428 -3.1507 19 6 7.5732 -3.8713 -2.4025 20 1 8.1061 -3.3030 -1.6545 21 6 7.9385 -5.1740 -2.6684 22 7 7.2893 -5.8661 -3.5789 23 14 9.3557 -5.9555 -1.7356 24 1 9.0501 -5.9583 -0.2823 25 1 9.5467 -7.3516 -2.2043 26 1 10.5973 -5.1780 -1.9788 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2127 2.3203 0.0006 31 1 1.3337 4.5113 0.0020 32 1 3.7920 4.6382 0.0024 33 1 5.1342 2.5755 0.0113 34 1 6.2710 -0.6222 0.7657 35 1 6.1618 1.1687 0.3397 36 1 6.3384 -0.3797 -4.1598 37 1 7.1284 0.0290 -2.6180 38 1 7.8952 -1.1288 -3.7316 39 1 6.6475 -3.2375 -4.2179 40 1 5.5171 -3.8170 -2.9711 41 1 7.5466 -6.7825 -3.7663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411181900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:30 Heat of formation + Delta-G solvation = -40.411806 kcal Electronic energy + Delta-G solvation = -22538.381444 eV Core-core repulsion = 19190.784575 eV Total energy + Delta-G solvation = -3347.596870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49499 -40.64596 -38.63033 -37.29344 -36.48021 -34.71135 -31.76025 -31.01144 -29.98141 -28.12517 -27.40506 -26.09603 -24.80460 -23.61939 -22.84641 -21.39712 -19.83871 -19.13944 -18.69339 -18.14173 -17.26193 -16.96496 -16.64222 -16.59279 -16.22775 -16.01675 -15.31848 -15.11617 -14.89375 -14.44272 -14.28336 -13.76328 -13.71612 -13.54034 -13.45976 -13.13013 -12.97163 -12.85959 -12.77619 -12.56720 -12.25115 -12.19659 -12.00244 -11.87407 -11.75359 -11.61740 -11.35792 -10.65954 -10.64138 -9.69515 -9.43936 -9.01113 -8.23825 -6.39456 0.34563 0.52765 1.35276 1.40462 1.47669 1.66873 2.26661 2.42500 2.44682 2.72433 3.05221 3.10177 3.51570 3.72397 3.89582 3.92205 4.11042 4.15690 4.23021 4.30470 4.35811 4.45624 4.48189 4.58140 4.68842 4.69784 4.70942 4.76712 4.90647 4.97335 5.03048 5.12369 5.16200 5.20253 5.44854 5.54440 5.57520 5.64812 5.83137 5.93397 6.04018 6.51559 6.67459 6.76646 7.25976 7.46538 8.83405 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.003521 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.277526 B = 7951.209451 C = 8393.331407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.108 3.892 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.154 4.154 7 C -0.082 4.082 8 C -0.103 4.103 9 C -0.080 4.080 10 H 0.086 0.914 11 C -0.124 4.124 12 C -0.173 4.173 13 H 0.150 0.850 14 C 0.520 3.480 15 O -0.601 6.601 16 N -0.607 5.607 17 C 0.079 3.921 18 C 0.259 3.741 19 C -0.545 4.545 20 H 0.054 0.946 21 C 0.006 3.994 22 N -0.930 5.930 23 Si 0.971 3.029 24 H -0.278 1.278 25 H -0.277 1.277 26 H -0.257 1.257 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.025 0.975 40 H -0.007 1.007 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 24.158 6.476 26.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C 0.063 3.937 4 C -0.231 4.231 5 C -0.102 4.102 6 C -0.171 4.171 7 C -0.100 4.100 8 C -0.104 4.104 9 C -0.099 4.099 10 H 0.104 0.896 11 C -0.161 4.161 12 C -0.193 4.193 13 H 0.168 0.832 14 C 0.310 3.690 15 O -0.483 6.483 16 N -0.337 5.337 17 C -0.063 4.063 18 C 0.138 3.862 19 C -0.584 4.584 20 H 0.073 0.927 21 C -0.193 4.193 22 N -0.569 5.569 23 Si 0.795 3.205 24 H -0.204 1.204 25 H -0.202 1.202 26 H -0.181 1.181 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.172 0.828 33 H 0.170 0.830 34 H 0.104 0.896 35 H 0.167 0.833 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.011 0.989 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.046 23.312 6.611 25.865 hybrid contribution 0.100 -1.376 0.082 1.382 sum -8.946 21.937 6.693 24.618 Atomic orbital electron populations 1.23281 0.76831 1.04915 1.02397 1.86156 1.23268 1.27793 1.88624 1.19211 0.92141 0.84981 0.97331 1.21472 1.00898 0.91949 1.08792 1.21345 0.95264 0.97299 0.96325 1.21408 0.94004 0.98977 1.02753 1.21184 1.01412 0.90155 0.97255 1.18603 0.90178 0.94028 1.07566 1.20637 0.91724 0.97014 1.00479 0.89620 1.23239 0.94332 1.04580 0.93926 1.22336 1.08477 0.93907 0.94622 0.83244 1.20426 0.78423 0.90606 0.79570 1.90621 1.50666 1.48848 1.58135 1.48095 1.43495 1.09342 1.32792 1.21936 0.97076 0.88937 0.98309 1.18761 0.95085 0.78273 0.94124 1.21681 1.16097 0.98653 1.21919 0.92743 1.25923 0.99921 0.97345 0.96133 1.70058 1.42352 1.10788 1.33743 0.85421 0.79131 0.77628 0.78347 1.20355 1.20195 1.18144 0.91517 0.87858 0.91035 0.83739 0.82917 0.82801 0.83011 0.89584 0.83266 0.91424 0.88559 0.91323 0.95735 0.98873 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.34 -10.21 9.68 -92.42 -0.89 -11.11 16 3 C 0.11 2.86 6.66 22.51 0.15 3.01 16 4 C -0.21 -4.06 9.04 22.36 0.20 -3.86 16 5 C -0.08 -1.25 10.04 22.25 0.22 -1.03 16 6 C -0.15 -2.23 10.04 22.28 0.22 -2.01 16 7 C -0.08 -1.52 9.30 22.25 0.21 -1.31 16 8 C -0.10 -2.68 5.62 -19.77 -0.11 -2.80 16 9 C -0.08 -2.53 5.26 -11.54 -0.06 -2.59 16 10 H 0.09 3.45 7.29 -2.39 -0.02 3.43 16 11 C -0.12 -3.28 9.56 30.59 0.29 -2.99 16 12 C -0.17 -5.57 4.44 -11.54 -0.05 -5.62 16 13 H 0.15 3.81 7.26 -2.39 -0.02 3.79 16 14 C 0.52 24.06 7.46 87.66 0.65 24.72 16 15 O -0.60 -34.54 15.84 -3.05 -0.05 -34.59 16 16 N -0.61 -27.86 2.86 -851.14 -2.43 -30.29 16 17 C 0.08 2.53 10.01 127.77 1.28 3.81 16 18 C 0.26 14.84 5.16 85.64 0.44 15.28 16 19 C -0.55 -32.77 9.39 25.60 0.24 -32.53 16 20 H 0.05 3.22 7.81 -2.91 -0.02 3.19 16 21 C 0.01 0.34 5.46 84.66 0.46 0.80 16 22 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 23 Si 0.97 46.05 29.54 68.60 2.03 48.08 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 H 0.07 1.04 7.66 -2.39 -0.02 1.03 16 28 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 30 H 0.14 2.08 6.30 -2.91 -0.02 2.06 16 31 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 32 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.15 2.02 6.02 -2.91 -0.02 2.00 16 34 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.15 2.51 6.17 -2.38 -0.01 2.49 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.10 2.36 6.64 -2.38 -0.02 2.34 16 38 H 0.07 2.26 8.07 -2.38 -0.02 2.24 16 39 H 0.02 1.41 8.07 -2.38 -0.02 1.39 16 40 H -0.01 -0.46 7.42 -2.39 -0.02 -0.47 16 41 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -83.48 344.99 5.23 -78.25 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.03 Total: 13.05 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.26 Total: -5.62 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -2.15 Total: -88.07 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -0.94 Total: -45.69 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -83.48 5.23 -78.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411181900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.842 kcal (2) G-P(sol) polarization free energy of solvation -83.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds