Wall clock time and date at job start Tue Mar 31 2020 05:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46960 * 2 1 4 4 C 1.46497 * 119.99653 * 271.26676 * 3 2 1 5 5 C 1.50699 * 109.47170 * 269.99689 * 4 3 2 6 6 H 1.08006 * 119.99735 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00077 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00379 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99792 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47236 * 89.99936 * 9 7 5 11 11 H 1.48508 * 109.46996 * 209.99759 * 9 7 5 12 12 H 1.48497 * 109.47200 * 329.99967 * 9 7 5 13 13 C 1.34776 * 119.99707 * 91.26592 * 3 2 1 14 14 O 1.21285 * 119.99443 * 175.66076 * 13 3 2 15 15 C 1.50693 * 120.00355 * 355.65984 * 13 3 2 16 16 O 1.42907 * 115.54822 * 47.19366 * 15 13 3 17 17 C 1.35895 * 116.99714 * 64.75546 * 16 15 13 18 18 C 1.38727 * 120.05912 * 5.74378 * 17 16 15 19 19 C 1.38144 * 119.94607 * 179.76719 * 18 17 16 20 20 C 1.38266 * 120.05667 * 0.51142 * 19 18 17 21 21 C 1.38266 * 120.11068 * 359.74248 * 20 19 18 22 22 C 1.38155 * 120.05511 * 0.02562 * 21 20 19 23 23 C 1.52996 * 117.49840 * 192.86344 * 15 13 3 24 24 C 1.53001 * 117.49888 * 261.52353 * 15 13 3 25 25 H 1.08998 * 109.46987 * 185.23109 * 1 2 3 26 26 H 1.08993 * 109.47285 * 305.23122 * 1 2 3 27 27 H 1.09002 * 109.46769 * 65.23179 * 1 2 3 28 28 H 1.08997 * 109.47056 * 240.00048 * 2 1 3 29 29 H 1.08993 * 109.46845 * 120.00188 * 2 1 3 30 30 H 1.09000 * 109.47944 * 30.00045 * 4 3 2 31 31 H 1.09010 * 109.47049 * 150.00205 * 4 3 2 32 32 H 0.96996 * 120.00602 * 180.02562 * 8 7 5 33 33 H 1.08001 * 120.02877 * 0.02562 * 18 17 16 34 34 H 1.07999 * 119.97576 * 180.25587 * 19 18 17 35 35 H 1.07993 * 119.94880 * 179.72193 * 20 19 18 36 36 H 1.08000 * 119.98001 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.02880 * 180.02562 * 22 21 20 38 38 H 1.09001 * 117.49991 * 215.00343 * 23 15 13 39 39 H 1.09000 * 117.50309 * 0.02562 * 23 15 13 40 40 H 1.08994 * 117.49929 * 359.97438 * 24 15 13 41 41 H 1.09004 * 117.49293 * 144.97242 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2360 2.0811 -1.2684 5 6 3.6499 1.8477 -1.7348 6 1 4.3193 1.2386 -1.1454 7 6 4.0890 2.4118 -2.9137 8 7 3.2742 3.1540 -3.6312 9 14 5.8414 2.1219 -3.4921 10 1 5.8865 0.9076 -4.3457 11 1 6.3046 3.2953 -4.2757 12 1 6.7263 1.9323 -2.3147 13 6 2.2673 2.0080 1.1669 14 8 2.7456 3.1225 1.1666 15 6 1.9513 1.3240 2.4720 16 8 2.3983 -0.0289 2.5828 17 6 3.7409 -0.2382 2.5674 18 6 4.6125 0.8411 2.5683 19 6 5.9770 0.6256 2.5575 20 6 6.4742 -0.6643 2.5352 21 6 5.6076 -1.7417 2.5289 22 6 4.2422 -1.5316 2.5445 23 6 1.9679 2.1796 3.7402 24 6 0.6367 1.6925 3.1626 25 1 -0.3633 -1.0234 0.0937 26 1 -0.3633 0.5928 0.8394 27 1 -0.3633 0.4306 -0.9332 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.5396 1.7026 -2.0166 31 1 2.0719 3.1495 -1.1268 32 1 3.5829 3.5505 -4.4608 33 1 4.2246 1.8490 2.5817 34 1 6.6560 1.4655 2.5624 35 1 7.5412 -0.8307 2.5222 36 1 5.9983 -2.7484 2.5119 37 1 3.5658 -2.3735 2.5400 38 1 2.3197 1.7107 4.6591 39 1 2.2070 3.2374 3.6306 40 1 0.0006 2.4300 2.6732 41 1 0.1126 0.9029 3.7011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421750981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:56 Heat of formation + Delta-G solvation = -6.748439 kcal Electronic energy + Delta-G solvation = -24107.762523 eV Core-core repulsion = 20761.625406 eV Total energy + Delta-G solvation = -3346.137116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.75520 -38.74091 -37.26933 -35.68657 -34.67687 -32.72451 -30.76072 -30.03702 -29.56314 -27.46046 -24.52259 -23.05172 -22.96747 -22.64277 -21.98772 -21.15235 -19.11798 -17.57933 -16.67260 -16.28714 -16.04124 -15.63675 -15.51614 -14.79795 -14.41410 -14.24445 -14.00405 -13.68950 -13.43918 -13.20044 -13.04209 -12.86615 -12.22857 -11.95569 -11.89726 -11.70467 -11.57085 -11.43774 -11.22484 -11.03099 -10.82141 -10.71788 -10.62821 -10.39034 -10.16770 -9.91884 -9.61850 -9.06091 -8.78930 -8.42535 -7.99510 -7.67368 -6.03412 -4.07302 1.54747 1.60500 2.87205 3.03708 3.31029 3.37160 3.42843 3.66686 3.96019 4.05434 4.45391 4.72356 4.78166 4.92603 5.04061 5.13420 5.28134 5.31600 5.38425 5.52293 5.56399 5.57169 5.66940 5.76869 5.80550 5.88294 5.91993 6.06560 6.18051 6.26737 6.33132 6.48634 6.59527 6.64003 6.73502 6.90517 7.04984 7.39488 7.46839 7.55761 7.93033 8.23782 8.37198 8.85197 9.01979 9.57390 11.04847 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012559 B = 0.007373 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.993045 B = 3796.532331 C = 4958.442688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.086 3.914 3 N -0.577 5.577 4 C 0.245 3.755 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.527 3.473 14 O -0.531 6.531 15 C 0.008 3.992 16 O -0.269 6.269 17 C 0.121 3.879 18 C -0.184 4.184 19 C -0.080 4.080 20 C -0.157 4.157 21 C -0.089 4.089 22 C -0.151 4.151 23 C -0.168 4.168 24 C -0.131 4.131 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 -8.742 14.251 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.037 4.037 3 N -0.307 5.307 4 C 0.126 3.874 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.311 3.689 14 O -0.409 6.409 15 C -0.034 4.034 16 O -0.183 6.183 17 C 0.077 3.923 18 C -0.202 4.202 19 C -0.098 4.098 20 C -0.175 4.175 21 C -0.107 4.107 22 C -0.170 4.170 23 C -0.206 4.206 24 C -0.168 4.168 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.177 -8.187 14.039 16.397 hybrid contribution 1.028 -0.061 -0.639 1.212 sum -1.149 -8.248 13.400 15.777 Atomic orbital electron populations 1.22155 0.96827 1.01242 1.01979 1.21883 0.93767 0.83914 1.04185 1.48174 1.61951 1.13483 1.07116 1.19335 0.96714 0.93249 0.78054 1.21398 0.97148 1.31310 1.06131 0.92444 1.24912 0.97722 0.94933 0.96469 1.69925 1.35533 1.33201 1.14854 0.86525 0.84762 0.77653 0.78718 1.20630 1.21088 1.19816 1.19331 0.79486 0.86140 0.83953 1.90699 1.43820 1.19862 1.86476 1.22306 1.04301 0.82896 0.93896 1.86022 1.19916 1.25105 1.87230 1.19013 0.82226 0.94164 0.96922 1.21568 0.94250 0.99214 1.05208 1.20985 0.94738 0.97131 0.96954 1.21039 0.99648 0.92682 1.04126 1.20868 0.92246 0.98926 0.98698 1.20359 0.95587 0.94141 1.06878 1.23575 0.99843 1.01542 0.95609 1.23306 0.90054 1.02606 1.00818 0.92301 0.92973 0.92549 0.90468 0.88866 0.94819 0.94037 0.92758 0.84481 0.85933 0.86214 0.85665 0.85455 0.87412 0.86525 0.86928 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 10.24 37.16 0.38 -2.05 16 2 C 0.09 1.55 5.92 -4.04 -0.02 1.53 16 3 N -0.58 -12.71 2.46 -175.06 -0.43 -13.14 16 4 C 0.25 6.53 5.13 -5.20 -0.03 6.50 16 5 C -0.52 -15.07 9.39 -34.44 -0.32 -15.40 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 9 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 13 C 0.53 11.18 5.69 -10.99 -0.06 11.12 16 14 O -0.53 -13.19 15.31 5.55 0.09 -13.11 16 15 C 0.01 0.13 1.06 -91.78 -0.10 0.04 16 16 O -0.27 -4.28 7.54 -19.41 -0.15 -4.43 16 17 C 0.12 1.99 6.17 -39.22 -0.24 1.75 16 18 C -0.18 -3.23 8.48 -39.44 -0.33 -3.57 16 19 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 20 C -0.16 -2.17 10.04 -39.56 -0.40 -2.57 16 21 C -0.09 -1.17 10.04 -39.60 -0.40 -1.57 16 22 C -0.15 -2.15 9.99 -39.43 -0.39 -2.55 16 23 C -0.17 -2.26 9.05 -26.70 -0.24 -2.50 16 24 C -0.13 -1.63 9.56 -26.69 -0.26 -1.88 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.74 7.51 -51.93 -0.39 0.35 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 29 H 0.09 1.59 4.34 -51.93 -0.23 1.37 16 30 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.04 1.23 7.49 -51.92 -0.39 0.84 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.14 2.63 4.93 -52.49 -0.26 2.37 16 34 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.12 1.66 7.73 -51.93 -0.40 1.26 16 40 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -32.96 342.93 -8.37 -41.33 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.85 Total: 4.14 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -2.91 Total: -11.13 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.31 Total: -39.27 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.06 Total: -17.53 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.96 -8.37 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421750981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.586 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds