Wall clock time and date at job start Tue Mar 31 2020 05:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46504 * 109.46960 * 2 1 4 4 C 1.46497 * 119.99653 * 271.26676 * 3 2 1 5 5 C 1.50699 * 109.47170 * 269.99689 * 4 3 2 6 6 H 1.08006 * 119.99735 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00077 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00379 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99792 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47236 * 89.99936 * 9 7 5 11 11 H 1.48508 * 109.46996 * 209.99759 * 9 7 5 12 12 H 1.48497 * 109.47200 * 329.99967 * 9 7 5 13 13 C 1.34776 * 119.99707 * 91.26592 * 3 2 1 14 14 O 1.21285 * 119.99443 * 175.66076 * 13 3 2 15 15 C 1.50693 * 120.00355 * 355.65984 * 13 3 2 16 16 O 1.42907 * 115.54822 * 47.19366 * 15 13 3 17 17 C 1.35895 * 116.99714 * 64.75546 * 16 15 13 18 18 C 1.38727 * 120.05912 * 5.74378 * 17 16 15 19 19 C 1.38144 * 119.94607 * 179.76719 * 18 17 16 20 20 C 1.38266 * 120.05667 * 0.51142 * 19 18 17 21 21 C 1.38266 * 120.11068 * 359.74248 * 20 19 18 22 22 C 1.38155 * 120.05511 * 0.02562 * 21 20 19 23 23 C 1.52996 * 117.49840 * 192.86344 * 15 13 3 24 24 C 1.53001 * 117.49888 * 261.52353 * 15 13 3 25 25 H 1.08998 * 109.46987 * 185.23109 * 1 2 3 26 26 H 1.08993 * 109.47285 * 305.23122 * 1 2 3 27 27 H 1.09002 * 109.46769 * 65.23179 * 1 2 3 28 28 H 1.08997 * 109.47056 * 240.00048 * 2 1 3 29 29 H 1.08993 * 109.46845 * 120.00188 * 2 1 3 30 30 H 1.09000 * 109.47944 * 30.00045 * 4 3 2 31 31 H 1.09010 * 109.47049 * 150.00205 * 4 3 2 32 32 H 0.96996 * 120.00602 * 180.02562 * 8 7 5 33 33 H 1.08001 * 120.02877 * 0.02562 * 18 17 16 34 34 H 1.07999 * 119.97576 * 180.25587 * 19 18 17 35 35 H 1.07993 * 119.94880 * 179.72193 * 20 19 18 36 36 H 1.08000 * 119.98001 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.02880 * 180.02562 * 22 21 20 38 38 H 1.09001 * 117.49991 * 215.00343 * 23 15 13 39 39 H 1.09000 * 117.50309 * 0.02562 * 23 15 13 40 40 H 1.08994 * 117.49929 * 359.97438 * 24 15 13 41 41 H 1.09004 * 117.49293 * 144.97242 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2360 2.0811 -1.2684 5 6 3.6499 1.8477 -1.7348 6 1 4.3193 1.2386 -1.1454 7 6 4.0890 2.4118 -2.9137 8 7 3.2742 3.1540 -3.6312 9 14 5.8414 2.1219 -3.4921 10 1 5.8865 0.9076 -4.3457 11 1 6.3046 3.2953 -4.2757 12 1 6.7263 1.9323 -2.3147 13 6 2.2673 2.0080 1.1669 14 8 2.7456 3.1225 1.1666 15 6 1.9513 1.3240 2.4720 16 8 2.3983 -0.0289 2.5828 17 6 3.7409 -0.2382 2.5674 18 6 4.6125 0.8411 2.5683 19 6 5.9770 0.6256 2.5575 20 6 6.4742 -0.6643 2.5352 21 6 5.6076 -1.7417 2.5289 22 6 4.2422 -1.5316 2.5445 23 6 1.9679 2.1796 3.7402 24 6 0.6367 1.6925 3.1626 25 1 -0.3633 -1.0234 0.0937 26 1 -0.3633 0.5928 0.8394 27 1 -0.3633 0.4306 -0.9332 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.5396 1.7026 -2.0166 31 1 2.0719 3.1495 -1.1268 32 1 3.5829 3.5505 -4.4608 33 1 4.2246 1.8490 2.5817 34 1 6.6560 1.4655 2.5624 35 1 7.5412 -0.8307 2.5222 36 1 5.9983 -2.7484 2.5119 37 1 3.5658 -2.3735 2.5400 38 1 2.3197 1.7107 4.6591 39 1 2.2070 3.2374 3.6306 40 1 0.0006 2.4300 2.6732 41 1 0.1126 0.9029 3.7011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421750981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:56 Heat of formation + Delta-G solvation = -26.079277 kcal Electronic energy + Delta-G solvation = -24108.600771 eV Core-core repulsion = 20761.625406 eV Total energy + Delta-G solvation = -3346.975364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.08159 -40.14471 -38.57595 -37.28056 -35.98631 -34.89711 -31.89677 -31.64566 -30.70524 -29.42439 -26.23324 -24.65953 -24.24210 -23.86354 -23.08793 -22.64944 -20.45658 -19.10310 -18.61263 -17.76678 -17.56512 -17.01410 -16.79302 -16.58759 -15.98728 -15.60371 -15.39289 -14.94179 -14.85516 -14.50644 -14.35417 -14.18609 -14.15444 -13.56443 -13.30180 -13.19809 -12.99488 -12.78704 -12.65809 -12.59611 -12.47810 -12.27187 -12.10232 -11.88833 -11.79044 -11.75180 -11.15172 -10.69426 -10.67782 -9.94150 -9.52920 -9.17595 -8.26894 -6.40932 0.39593 0.45142 1.30619 1.33754 1.40446 1.46083 1.79923 2.11287 2.35042 2.77280 2.85590 3.02205 3.33976 3.58753 3.75924 3.91067 4.04512 4.17368 4.22266 4.30002 4.41891 4.48108 4.53787 4.57237 4.64405 4.77521 4.78611 4.91390 4.96620 5.02580 5.04986 5.07534 5.12616 5.33474 5.37237 5.48566 5.52637 5.59203 5.75460 5.82489 6.01084 6.27984 6.62708 6.69836 7.18463 7.34139 8.80392 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012559 B = 0.007373 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.993045 B = 3796.532331 C = 4958.442688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.083 3.917 3 N -0.585 5.585 4 C 0.262 3.738 5 C -0.537 4.537 6 H 0.044 0.956 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.963 3.037 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.275 1.275 13 C 0.522 3.478 14 O -0.582 6.582 15 C -0.012 4.012 16 O -0.260 6.260 17 C 0.101 3.899 18 C -0.213 4.213 19 C -0.102 4.102 20 C -0.157 4.157 21 C -0.083 4.083 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.100 4.100 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.024 0.976 31 H -0.001 1.001 32 H 0.268 0.732 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.154 0.846 38 H 0.131 0.869 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -11.660 15.496 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.039 4.039 3 N -0.315 5.315 4 C 0.141 3.859 5 C -0.576 4.576 6 H 0.063 0.937 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.787 3.213 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.200 1.200 13 C 0.309 3.691 14 O -0.463 6.463 15 C -0.054 4.054 16 O -0.173 6.173 17 C 0.057 3.943 18 C -0.232 4.232 19 C -0.120 4.120 20 C -0.175 4.175 21 C -0.101 4.101 22 C -0.171 4.171 23 C -0.196 4.196 24 C -0.137 4.137 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.042 0.958 31 H 0.017 0.983 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.165 0.835 36 H 0.182 0.818 37 H 0.171 0.829 38 H 0.149 0.851 39 H 0.119 0.881 40 H 0.132 0.868 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.990 -11.143 15.300 19.032 hybrid contribution 0.996 0.849 -1.010 1.653 sum -0.995 -10.295 14.290 17.640 Atomic orbital electron populations 1.22089 0.94010 1.03554 1.01631 1.22111 0.96085 0.81519 1.04184 1.48190 1.62425 1.14874 1.05988 1.18771 0.95610 0.91303 0.80179 1.21566 0.98006 1.31559 1.06473 0.93750 1.25798 1.02139 0.94422 0.96468 1.70032 1.37526 1.33713 1.15277 0.85488 0.79196 0.78406 0.78224 1.18708 1.20168 1.20038 1.20165 0.77902 0.85674 0.85351 1.90652 1.45772 1.22355 1.87536 1.21976 1.07994 0.83522 0.91938 1.86011 1.19722 1.24411 1.87176 1.19298 0.82300 0.94804 0.97883 1.21514 0.95451 0.98589 1.07611 1.21202 0.94306 0.98647 0.97877 1.21411 1.01395 0.91871 1.02842 1.21373 0.91671 1.00499 0.96545 1.20779 0.96739 0.93809 1.05761 1.23634 1.00659 1.00405 0.94937 1.23555 0.88826 1.02751 0.98521 0.88762 0.92005 0.94017 0.91910 0.87344 0.95817 0.98270 0.92299 0.87179 0.85821 0.83477 0.81772 0.82871 0.85131 0.88129 0.86767 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 10.24 71.98 0.74 -3.62 16 2 C 0.08 2.98 5.92 86.38 0.51 3.49 16 3 N -0.59 -26.78 2.46 -826.15 -2.03 -28.81 16 4 C 0.26 14.79 5.13 85.63 0.44 15.23 16 5 C -0.54 -32.39 9.39 25.60 0.24 -32.15 16 6 H 0.04 2.73 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.65 5.46 84.66 0.46 1.11 16 8 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 9 Si 0.96 46.38 29.54 68.60 2.03 48.40 16 10 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 C 0.52 23.09 5.69 87.65 0.50 23.59 16 14 O -0.58 -30.97 15.31 -3.05 -0.05 -31.02 16 15 C -0.01 -0.39 1.06 -11.54 -0.01 -0.40 16 16 O -0.26 -7.86 7.54 -92.37 -0.70 -8.56 16 17 C 0.10 3.24 6.17 22.51 0.14 3.38 16 18 C -0.21 -7.68 8.48 22.36 0.19 -7.49 16 19 C -0.10 -3.27 10.04 22.25 0.22 -3.05 16 20 C -0.16 -4.03 10.04 22.28 0.22 -3.81 16 21 C -0.08 -1.90 10.04 22.26 0.22 -1.68 16 22 C -0.15 -3.94 9.99 22.37 0.22 -3.72 16 23 C -0.16 -4.16 9.05 30.62 0.28 -3.88 16 24 C -0.10 -2.25 9.56 30.62 0.29 -1.96 16 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 1.62 7.51 -2.39 -0.02 1.60 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 2.40 8.08 -2.39 -0.02 2.38 16 29 H 0.11 3.57 4.34 -2.39 -0.01 3.56 16 30 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 31 H 0.00 -0.05 7.49 -2.38 -0.02 -0.07 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.11 4.51 4.93 -2.91 -0.01 4.49 16 34 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 37 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 38 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.10 2.96 7.73 -2.39 -0.02 2.95 16 40 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.15 2.30 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -76.29 342.93 5.23 -71.06 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 1.02 Total: 20.67 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.67 Total: -14.97 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -1.74 Total: -85.58 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.74 Total: -39.58 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -76.29 5.23 -71.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421750981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.978 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds