Wall clock time and date at job start Tue Mar 31 2020 06:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42894 * 109.47359 * 2 1 4 4 C 1.35914 * 116.99909 * 180.02562 * 3 2 1 5 5 C 1.38850 * 119.98550 * 0.02562 * 4 3 2 6 6 C 1.38244 * 120.23760 * 180.02562 * 5 4 3 7 7 C 1.38016 * 120.20806 * 359.67393 * 6 5 4 8 8 C 1.39565 * 119.95911 * 0.60018 * 7 6 5 9 9 C 1.47862 * 120.11317 * 179.69903 * 8 7 6 10 10 O 1.21555 * 119.99884 * 184.88092 * 9 8 7 11 11 N 1.34778 * 119.99791 * 4.87253 * 9 8 7 12 12 C 1.46502 * 119.99872 * 185.07444 * 11 9 8 13 13 C 1.52991 * 109.47355 * 184.99930 * 12 11 9 14 14 C 1.50698 * 115.55224 * 54.24217 * 13 12 11 15 15 H 1.08003 * 120.00125 * 215.59684 * 14 13 12 16 16 C 1.37883 * 119.99918 * 35.31505 * 14 13 12 17 17 N 1.31513 * 119.99765 * 355.78365 * 16 14 13 18 18 Si 1.86797 * 119.99992 * 175.78537 * 16 14 13 19 19 H 1.48499 * 109.46984 * 60.00378 * 18 16 14 20 20 H 1.48497 * 109.47200 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47246 * 300.00261 * 18 16 14 22 22 C 1.52999 * 117.50068 * 199.91223 * 13 12 11 23 23 C 1.53001 * 117.49864 * 268.57159 * 13 12 11 24 24 C 1.38453 * 119.98251 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.47065 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46965 * 300.00210 * 1 2 3 27 27 H 1.08998 * 109.46746 * 59.99759 * 1 2 3 28 28 H 1.09007 * 109.46934 * 239.99949 * 2 1 3 29 29 H 1.08998 * 109.47438 * 120.00530 * 2 1 3 30 30 H 1.07997 * 119.87924 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.89795 * 180.02562 * 6 5 4 32 32 H 1.07996 * 120.01861 * 180.30828 * 7 6 5 33 33 H 0.96999 * 120.00390 * 5.08229 * 11 9 8 34 34 H 1.09007 * 109.46984 * 64.99862 * 12 11 9 35 35 H 1.09000 * 109.46987 * 305.00111 * 12 11 9 36 36 H 0.96998 * 119.99928 * 184.99642 * 17 16 14 37 37 H 1.09004 * 117.50178 * 215.00224 * 22 13 12 38 38 H 1.09000 * 117.49714 * 0.02562 * 22 13 12 39 39 H 1.08997 * 117.50076 * 359.97438 * 23 13 12 40 40 H 1.09006 * 117.50010 * 144.97406 * 23 13 12 41 41 H 1.08002 * 120.10638 * 0.04044 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3538 1.5252 -0.0005 5 6 4.1993 0.4238 -0.0016 6 6 5.5706 0.5988 -0.0016 7 6 6.1085 1.8699 -0.0074 8 6 5.2665 2.9829 -0.0005 9 6 5.8391 4.3462 0.0001 10 8 5.1078 5.3125 0.0956 11 7 7.1718 4.5174 -0.1052 12 6 7.7491 5.8592 0.0070 13 6 9.2520 5.7927 -0.2712 14 6 9.6435 5.1522 -1.5779 15 1 10.5414 4.5550 -1.6390 16 6 8.8524 5.3238 -2.6941 17 7 7.7144 5.9762 -2.5995 18 14 9.3970 4.6295 -4.3405 19 1 9.5480 3.1563 -4.2309 20 1 8.3778 4.9466 -5.3729 21 1 10.6976 5.2331 -4.7265 22 6 10.1161 6.9492 0.2355 23 6 10.1833 5.5841 0.9247 24 6 3.8827 2.8047 0.0000 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.7841 -0.5732 -0.0016 31 1 6.2232 -0.2618 -0.0029 32 1 7.1802 2.0030 -0.0124 33 1 7.7488 3.7522 -0.2552 34 1 7.5825 6.2435 1.0133 35 1 7.2744 6.5206 -0.7178 36 1 7.1237 6.0347 -3.3666 37 1 10.9678 7.2468 -0.3763 38 1 9.6139 7.7572 0.7674 39 1 9.7252 5.4947 1.9097 40 1 11.0789 4.9832 0.7665 41 1 3.2262 3.6623 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431160010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:31 Heat of formation + Delta-G solvation = -25.801481 kcal Electronic energy + Delta-G solvation = -22592.769080 eV Core-core repulsion = 19245.805762 eV Total energy + Delta-G solvation = -3346.963318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.20223 -38.83511 -37.13069 -36.44726 -33.11905 -32.21438 -32.06844 -30.90647 -29.43588 -26.18770 -25.41820 -24.18443 -22.26876 -22.22664 -21.24308 -19.69184 -19.27791 -18.20384 -16.60337 -16.22743 -16.16001 -15.91157 -15.30374 -14.84385 -14.71445 -14.17550 -13.89731 -13.56142 -13.40442 -13.35061 -12.97858 -12.80973 -12.50903 -12.04127 -11.99217 -11.72084 -11.57952 -11.40758 -11.05504 -10.85700 -10.84761 -10.73427 -10.52364 -10.24411 -9.73024 -9.14612 -8.94872 -8.85693 -8.84674 -8.28782 -8.17596 -7.81028 -5.98066 -4.19353 1.09413 1.53027 3.07537 3.23250 3.31658 3.31795 3.41399 4.12002 4.28910 4.32942 4.69366 4.69850 4.86819 4.94239 4.96717 5.04673 5.20707 5.36550 5.39935 5.48398 5.54522 5.57664 5.76696 5.81216 6.02197 6.05363 6.30027 6.32473 6.47176 6.54173 6.57426 6.60904 6.70571 6.74569 6.89821 7.10624 7.25481 7.41495 7.58148 7.66216 7.98338 8.30733 8.57884 8.82568 9.18588 9.44520 10.90613 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.004047 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.567827 B = 6917.825145 C = 7440.202168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.316 6.316 4 C 0.117 3.883 5 C -0.196 4.196 6 C -0.089 4.089 7 C -0.124 4.124 8 C -0.077 4.077 9 C 0.545 3.455 10 O -0.553 6.553 11 N -0.672 5.672 12 C 0.163 3.837 13 C 0.036 3.964 14 C -0.501 4.501 15 H 0.060 0.940 16 C 0.075 3.925 17 N -0.864 5.864 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.199 4.199 23 C -0.213 4.213 24 C -0.098 4.098 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.397 0.603 34 H 0.019 0.981 35 H 0.119 0.881 36 H 0.264 0.736 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.361 -13.207 5.024 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.230 6.230 4 C 0.072 3.928 5 C -0.215 4.215 6 C -0.107 4.107 7 C -0.143 4.143 8 C -0.080 4.080 9 C 0.330 3.670 10 O -0.434 6.434 11 N -0.318 5.318 12 C 0.040 3.960 13 C 0.036 3.964 14 C -0.538 4.538 15 H 0.079 0.921 16 C -0.130 4.130 17 N -0.500 5.500 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.237 4.237 23 C -0.250 4.250 24 C -0.118 4.118 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.232 0.768 34 H 0.037 0.963 35 H 0.137 0.863 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.139 -12.226 4.962 16.051 hybrid contribution 0.791 -1.028 -1.011 1.645 sum -8.348 -13.254 3.952 16.155 Atomic orbital electron populations 1.21772 0.92851 1.02666 1.03640 1.22754 0.95815 0.82264 1.01259 1.86087 1.19005 1.28943 1.88961 1.18802 0.82248 0.93844 0.97887 1.21305 0.94473 0.97767 1.07984 1.20849 0.94180 0.97183 0.98505 1.21355 1.00179 0.91852 1.00886 1.20050 0.93056 0.94320 1.00598 1.17982 0.83077 0.87572 0.78325 1.90701 1.59728 1.41273 1.51660 1.45537 1.05580 1.11536 1.69154 1.21122 0.92920 0.83875 0.98043 1.19227 0.88545 0.96655 0.92006 1.20458 1.09544 1.32006 0.91835 0.92144 1.25004 0.94843 0.94313 0.98806 1.69836 1.09599 1.39838 1.30719 0.86632 0.78488 0.79311 0.83459 1.20219 1.21200 1.20163 1.22942 1.04696 0.91158 1.04929 1.22961 1.03820 1.00975 0.97248 1.20476 0.94341 0.95212 1.01734 0.90515 0.91493 0.91459 0.92121 0.92144 0.85599 0.85402 0.84997 0.76756 0.96259 0.86336 0.92506 0.90214 0.91441 0.91330 0.90622 0.84045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.05 0.50 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.26 10.13 -19.47 -0.20 -4.46 16 4 C 0.12 1.72 6.68 -39.28 -0.26 1.46 16 5 C -0.20 -2.45 9.03 -39.35 -0.36 -2.80 16 6 C -0.09 -1.13 10.03 -39.66 -0.40 -1.53 16 7 C -0.12 -1.89 9.52 -39.17 -0.37 -2.26 16 8 C -0.08 -1.40 5.87 -104.98 -0.62 -2.02 16 9 C 0.55 11.95 7.76 -12.32 -0.10 11.86 16 10 O -0.55 -13.92 16.34 5.32 0.09 -13.83 16 11 N -0.67 -14.65 4.97 -61.24 -0.30 -14.95 16 12 C 0.16 3.88 4.62 -4.05 -0.02 3.87 16 13 C 0.04 0.85 2.04 -155.67 -0.32 0.53 16 14 C -0.50 -12.67 8.43 -34.44 -0.29 -12.96 16 15 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 16 C 0.08 1.93 5.31 -17.82 -0.09 1.84 16 17 N -0.86 -23.26 10.11 55.43 0.56 -22.70 16 18 Si 0.89 20.24 29.54 -169.99 -5.02 15.21 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 C -0.20 -4.32 9.96 -26.69 -0.27 -4.58 16 23 C -0.21 -4.37 9.92 -26.69 -0.26 -4.63 16 24 C -0.10 -1.70 9.53 -39.02 -0.37 -2.07 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 30 H 0.13 1.19 6.28 -52.49 -0.33 0.86 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.13 1.88 6.47 -52.49 -0.34 1.54 16 33 H 0.40 8.10 6.21 -40.82 -0.25 7.84 16 34 H 0.02 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.12 3.24 5.89 -51.93 -0.31 2.93 16 36 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 37 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.14 2.56 7.66 -52.49 -0.40 2.16 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -29.51 343.94 -8.60 -38.11 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.77 Total: 10.75 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -3.14 Total: -13.32 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.26 Total: -37.65 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.11 Total: -18.29 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.51 -8.60 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431160010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.311 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds