Wall clock time and date at job start Tue Mar 31 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42894 * 109.47359 * 2 1 4 4 C 1.35914 * 116.99909 * 180.02562 * 3 2 1 5 5 C 1.38850 * 119.98550 * 0.02562 * 4 3 2 6 6 C 1.38244 * 120.23760 * 180.02562 * 5 4 3 7 7 C 1.38016 * 120.20806 * 359.67393 * 6 5 4 8 8 C 1.39565 * 119.95911 * 0.60018 * 7 6 5 9 9 C 1.47862 * 120.11317 * 179.69903 * 8 7 6 10 10 O 1.21555 * 119.99884 * 184.88092 * 9 8 7 11 11 N 1.34778 * 119.99791 * 4.87253 * 9 8 7 12 12 C 1.46502 * 119.99872 * 185.07444 * 11 9 8 13 13 C 1.52991 * 109.47355 * 184.99930 * 12 11 9 14 14 C 1.50698 * 115.55224 * 54.24217 * 13 12 11 15 15 H 1.08003 * 120.00125 * 215.59684 * 14 13 12 16 16 C 1.37883 * 119.99918 * 35.31505 * 14 13 12 17 17 N 1.31513 * 119.99765 * 355.78365 * 16 14 13 18 18 Si 1.86797 * 119.99992 * 175.78537 * 16 14 13 19 19 H 1.48499 * 109.46984 * 60.00378 * 18 16 14 20 20 H 1.48497 * 109.47200 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47246 * 300.00261 * 18 16 14 22 22 C 1.52999 * 117.50068 * 199.91223 * 13 12 11 23 23 C 1.53001 * 117.49864 * 268.57159 * 13 12 11 24 24 C 1.38453 * 119.98251 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.47065 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46965 * 300.00210 * 1 2 3 27 27 H 1.08998 * 109.46746 * 59.99759 * 1 2 3 28 28 H 1.09007 * 109.46934 * 239.99949 * 2 1 3 29 29 H 1.08998 * 109.47438 * 120.00530 * 2 1 3 30 30 H 1.07997 * 119.87924 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.89795 * 180.02562 * 6 5 4 32 32 H 1.07996 * 120.01861 * 180.30828 * 7 6 5 33 33 H 0.96999 * 120.00390 * 5.08229 * 11 9 8 34 34 H 1.09007 * 109.46984 * 64.99862 * 12 11 9 35 35 H 1.09000 * 109.46987 * 305.00111 * 12 11 9 36 36 H 0.96998 * 119.99928 * 184.99642 * 17 16 14 37 37 H 1.09004 * 117.50178 * 215.00224 * 22 13 12 38 38 H 1.09000 * 117.49714 * 0.02562 * 22 13 12 39 39 H 1.08997 * 117.50076 * 359.97438 * 23 13 12 40 40 H 1.09006 * 117.50010 * 144.97406 * 23 13 12 41 41 H 1.08002 * 120.10638 * 0.04044 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3538 1.5252 -0.0005 5 6 4.1993 0.4238 -0.0016 6 6 5.5706 0.5988 -0.0016 7 6 6.1085 1.8699 -0.0074 8 6 5.2665 2.9829 -0.0005 9 6 5.8391 4.3462 0.0001 10 8 5.1078 5.3125 0.0956 11 7 7.1718 4.5174 -0.1052 12 6 7.7491 5.8592 0.0070 13 6 9.2520 5.7927 -0.2712 14 6 9.6435 5.1522 -1.5779 15 1 10.5414 4.5550 -1.6390 16 6 8.8524 5.3238 -2.6941 17 7 7.7144 5.9762 -2.5995 18 14 9.3970 4.6295 -4.3405 19 1 9.5480 3.1563 -4.2309 20 1 8.3778 4.9466 -5.3729 21 1 10.6976 5.2331 -4.7265 22 6 10.1161 6.9492 0.2355 23 6 10.1833 5.5841 0.9247 24 6 3.8827 2.8047 0.0000 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.7841 -0.5732 -0.0016 31 1 6.2232 -0.2618 -0.0029 32 1 7.1802 2.0030 -0.0124 33 1 7.7488 3.7522 -0.2552 34 1 7.5825 6.2435 1.0133 35 1 7.2744 6.5206 -0.7178 36 1 7.1237 6.0347 -3.3666 37 1 10.9678 7.2468 -0.3763 38 1 9.6139 7.7572 0.7674 39 1 9.7252 5.4947 1.9097 40 1 11.0789 4.9832 0.7665 41 1 3.2262 3.6623 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431160010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:30 Heat of formation + Delta-G solvation = -42.777929 kcal Electronic energy + Delta-G solvation = -22593.505234 eV Core-core repulsion = 19245.805762 eV Total energy + Delta-G solvation = -3347.699472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38591 -40.32956 -38.60242 -37.96565 -34.87192 -34.12839 -32.88984 -32.11840 -30.52216 -27.94413 -27.28361 -25.22633 -23.40839 -23.36022 -22.92013 -21.17622 -21.02925 -19.59960 -18.24537 -17.49535 -17.11811 -17.04958 -16.74991 -16.70393 -16.19690 -15.90574 -15.50181 -14.78716 -14.75598 -14.41669 -14.25213 -14.21159 -13.61902 -13.38687 -13.36289 -13.01619 -12.89260 -12.84640 -12.60402 -12.55023 -12.30600 -12.02498 -11.87523 -11.64039 -11.54043 -10.97169 -10.80306 -10.64256 -10.15919 -10.08867 -9.63477 -9.26115 -7.92679 -6.19784 -0.15007 0.39774 1.43353 1.46458 1.52956 1.97934 2.11175 2.41944 2.59050 2.90324 3.09079 3.64004 3.79765 3.82818 4.08193 4.08916 4.15756 4.19484 4.29457 4.36086 4.39757 4.52587 4.55857 4.75474 4.79439 4.83342 4.93855 4.95766 4.97474 5.13158 5.16897 5.27090 5.31177 5.36425 5.38681 5.53845 5.60765 5.66808 5.87056 5.99241 6.37303 6.43138 6.77744 6.94734 7.45841 7.48698 8.92436 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.004047 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.567827 B = 6917.825145 C = 7440.202168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 O -0.336 6.336 4 C 0.117 3.883 5 C -0.178 4.178 6 C -0.076 4.076 7 C -0.127 4.127 8 C -0.103 4.103 9 C 0.540 3.460 10 O -0.600 6.600 11 N -0.666 5.666 12 C 0.173 3.827 13 C 0.006 3.994 14 C -0.505 4.505 15 H 0.062 0.938 16 C 0.034 3.966 17 N -0.891 5.891 18 Si 0.948 3.052 19 H -0.264 1.264 20 H -0.296 1.296 21 H -0.274 1.274 22 C -0.201 4.201 23 C -0.183 4.183 24 C -0.124 4.124 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.140 0.860 33 H 0.404 0.596 34 H 0.018 0.982 35 H 0.080 0.920 36 H 0.255 0.745 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 -16.979 5.382 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.251 6.251 4 C 0.072 3.928 5 C -0.197 4.197 6 C -0.093 4.093 7 C -0.146 4.146 8 C -0.106 4.106 9 C 0.327 3.673 10 O -0.484 6.484 11 N -0.313 5.313 12 C 0.049 3.951 13 C 0.006 3.994 14 C -0.543 4.543 15 H 0.080 0.920 16 C -0.168 4.168 17 N -0.528 5.528 18 Si 0.775 3.225 19 H -0.189 1.189 20 H -0.222 1.222 21 H -0.200 1.200 22 C -0.239 4.239 23 C -0.220 4.220 24 C -0.144 4.144 25 H 0.123 0.877 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.185 0.815 31 H 0.189 0.811 32 H 0.157 0.843 33 H 0.241 0.759 34 H 0.036 0.964 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.347 -16.032 5.330 18.844 hybrid contribution 0.489 0.080 -1.077 1.186 sum -7.857 -15.952 4.253 18.283 Atomic orbital electron populations 1.21823 0.91730 1.04292 1.02951 1.23167 0.96834 0.80388 1.02849 1.86087 1.18325 1.32007 1.88710 1.18805 0.83328 0.93353 0.97337 1.21762 0.94153 0.98706 1.05063 1.21311 0.94868 0.97116 0.96031 1.21508 1.00216 0.92122 1.00795 1.19755 0.93761 0.92948 1.04105 1.18651 0.82742 0.88954 0.76943 1.90655 1.60639 1.43301 1.53763 1.45433 1.05783 1.11002 1.69033 1.20799 0.93299 0.84322 0.96640 1.19257 0.88507 0.98661 0.93002 1.20694 1.09309 1.31652 0.92622 0.91959 1.25626 0.94798 0.94802 1.01542 1.70058 1.10556 1.41426 1.30718 0.85759 0.77593 0.79350 0.79838 1.18852 1.22232 1.19976 1.22967 1.04072 0.91824 1.05054 1.22961 1.02859 0.99555 0.96674 1.20365 0.93930 0.96099 1.03988 0.87658 0.92095 0.92312 0.90566 0.90244 0.81504 0.81121 0.84270 0.75912 0.96371 0.90220 0.93553 0.90363 0.90704 0.89657 0.89430 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.04 0.64 5.46 71.98 0.39 1.03 16 3 O -0.34 -8.72 10.13 -92.59 -0.94 -9.66 16 4 C 0.12 3.31 6.68 22.47 0.15 3.46 16 5 C -0.18 -3.75 9.03 22.42 0.20 -3.55 16 6 C -0.08 -1.61 10.03 22.22 0.22 -1.39 16 7 C -0.13 -3.69 9.52 22.54 0.21 -3.48 16 8 C -0.10 -3.83 5.87 -20.10 -0.12 -3.95 16 9 C 0.54 24.93 7.76 86.79 0.67 25.61 16 10 O -0.60 -32.47 16.34 -3.89 -0.06 -32.53 16 11 N -0.67 -29.95 4.97 -465.95 -2.31 -32.27 16 12 C 0.17 8.53 4.62 86.38 0.40 8.92 16 13 C 0.01 0.30 2.04 -52.93 -0.11 0.19 16 14 C -0.51 -25.37 8.43 25.60 0.22 -25.16 16 15 H 0.06 3.05 7.82 -2.91 -0.02 3.02 16 16 C 0.03 1.75 5.31 84.66 0.45 2.20 16 17 N -0.89 -49.64 10.11 21.45 0.22 -49.42 16 18 Si 0.95 41.53 29.54 68.60 2.03 43.56 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 C -0.20 -8.57 9.96 30.62 0.30 -8.27 16 23 C -0.18 -7.18 9.92 30.62 0.30 -6.88 16 24 C -0.12 -4.47 9.53 22.63 0.22 -4.25 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 0.94 7.66 -2.38 -0.02 0.92 16 29 H 0.08 0.92 7.66 -2.39 -0.02 0.91 16 30 H 0.17 2.15 6.28 -2.91 -0.02 2.13 16 31 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.14 3.74 6.47 -2.91 -0.02 3.72 16 33 H 0.40 16.62 6.21 -92.71 -0.58 16.05 16 34 H 0.02 0.88 8.09 -2.38 -0.02 0.86 16 35 H 0.08 4.61 5.89 -2.39 -0.01 4.59 16 36 H 0.25 14.20 8.32 -92.71 -0.77 13.43 16 37 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 38 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 41 H 0.11 4.60 7.66 -2.91 -0.02 4.57 16 Total: -1.00 -67.29 343.94 3.65 -63.64 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.46 Total: 33.29 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 4.26 Total: -16.61 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -2.10 Total: -81.69 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.00 Total: -42.19 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -67.29 3.65 -63.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431160010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.861 kcal (2) G-P(sol) polarization free energy of solvation -67.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds