Wall clock time and date at job start Tue Mar 31 2020 07:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99536 * 2 1 4 4 C 1.53003 * 109.47020 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47398 * 175.45640 * 4 3 2 6 6 N 1.46910 * 110.43379 * 55.58857 * 5 4 3 7 7 C 1.46898 * 110.99943 * 59.57900 * 6 5 4 8 8 C 1.53002 * 109.47227 * 175.97385 * 7 6 5 9 9 C 1.52993 * 109.47409 * 180.02562 * 8 7 6 10 10 S 1.80999 * 109.47167 * 180.02562 * 9 8 7 11 11 C 1.76203 * 99.99848 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00447 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99718 * 180.02562 * 11 10 9 14 14 N 1.31632 * 120.00316 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00050 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47063 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47674 * 119.99681 * 15 13 11 18 18 H 1.48503 * 109.47087 * 240.00223 * 15 13 11 19 19 C 1.54807 * 110.60508 * 292.96533 * 5 4 3 20 20 C 1.54993 * 102.09274 * 220.38520 * 19 5 4 21 21 O 1.44377 * 103.49223 * 37.02294 * 20 19 5 22 22 C 1.43750 * 106.97392 * 319.94034 * 21 20 19 23 23 H 1.08996 * 109.46736 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47151 * 300.00241 * 1 2 3 25 25 H 1.08995 * 109.47112 * 60.00372 * 1 2 3 26 26 H 1.09003 * 109.47255 * 60.00288 * 3 2 1 27 27 H 1.08999 * 109.47421 * 299.99636 * 3 2 1 28 28 H 1.09001 * 109.47251 * 55.45857 * 4 3 2 29 29 H 1.08999 * 109.47016 * 295.46262 * 4 3 2 30 30 H 1.00895 * 110.99929 * 183.53120 * 6 5 4 31 31 H 1.08999 * 109.47033 * 55.97831 * 7 6 5 32 32 H 1.09002 * 109.47477 * 295.97288 * 7 6 5 33 33 H 1.09000 * 109.46850 * 59.99493 * 8 7 6 34 34 H 1.09002 * 109.46813 * 300.00310 * 8 7 6 35 35 H 1.09002 * 109.47125 * 299.99799 * 9 8 7 36 36 H 1.08994 * 109.47346 * 59.99758 * 9 8 7 37 37 H 0.97003 * 120.00226 * 180.02562 * 14 13 11 38 38 H 1.09000 * 110.90586 * 338.58730 * 19 5 4 39 39 H 1.09000 * 110.90629 * 102.18530 * 19 5 4 40 40 H 1.08999 * 110.62249 * 278.51967 * 20 19 5 41 41 H 1.09000 * 110.75176 * 155.58865 * 20 19 5 42 42 H 1.08995 * 109.87075 * 267.08698 * 22 21 20 43 43 H 1.08994 * 110.00266 * 146.00832 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1574 2.5779 -0.1136 6 7 3.6617 3.4505 0.9593 7 6 3.9909 2.8991 2.2805 8 6 3.5490 3.8811 3.3675 9 6 3.8924 3.3072 4.7435 10 16 3.3690 4.4686 6.0293 11 6 3.8704 3.5804 7.4662 12 1 4.3459 2.6160 7.3664 13 6 3.6541 4.1204 8.7264 14 7 3.0740 5.2958 8.8482 15 14 4.1862 3.1793 10.2497 16 1 4.8088 1.8933 9.8448 17 1 5.1708 3.9878 11.0125 18 1 3.0014 2.9080 11.1030 19 6 3.8545 3.1978 -1.4995 20 6 5.2010 3.8799 -1.8514 21 8 6.1886 2.9641 -1.3313 22 6 5.6950 2.4875 -0.0681 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8520 0.5751 -0.8456 29 1 3.8624 0.7159 0.9287 30 1 4.0218 4.3876 0.8587 31 1 5.0670 2.7403 2.3501 32 1 3.4737 1.9493 2.4171 33 1 2.4730 4.0401 3.2978 34 1 4.0662 4.8309 3.2310 35 1 3.3756 2.3573 4.8803 36 1 4.9685 3.1486 4.8128 37 1 2.9232 5.6733 9.7289 38 1 3.6088 2.4237 -2.2265 39 1 3.0526 3.9327 -1.4300 40 1 5.2802 4.8495 -1.3598 41 1 5.3087 3.9882 -2.9306 42 1 6.0793 3.1112 0.7389 43 1 6.0011 1.4528 0.0854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447393501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:03 Heat of formation + Delta-G solvation = -107.634305 kcal Electronic energy + Delta-G solvation = -21160.013891 eV Core-core repulsion = 17944.945987 eV Total energy + Delta-G solvation = -3215.067904 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46605 -37.94219 -36.50195 -33.79147 -32.43690 -30.86087 -30.46845 -28.27345 -26.36926 -25.73031 -24.75377 -23.18258 -22.90450 -21.05717 -19.66712 -17.49038 -17.02474 -16.64648 -16.29987 -16.05483 -15.64047 -15.10245 -14.90741 -14.81035 -14.68313 -14.42247 -13.88959 -13.40772 -13.08983 -12.90983 -12.77242 -12.34235 -12.19070 -11.89738 -11.63086 -11.52696 -11.40961 -11.22374 -11.21490 -11.09475 -10.92396 -10.76159 -10.60478 -10.42656 -9.95783 -9.74822 -9.53730 -9.07319 -8.59108 -8.31319 -6.53790 -6.23726 -3.93959 3.20554 3.21385 3.29516 3.45959 3.56168 3.63783 4.04752 4.21710 4.22406 4.45692 4.66574 4.80764 4.89531 5.00362 5.09081 5.12455 5.19927 5.22604 5.27071 5.30631 5.37411 5.40040 5.42151 5.48131 5.49707 5.54554 5.59859 5.66940 5.72940 5.80491 5.87585 5.91227 6.10999 6.28689 6.51735 6.55301 6.69491 6.89561 7.04528 7.19353 7.60285 8.36235 9.22896 10.84509 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.003184 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.774935 B = 8793.054782 C = 9745.024043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.399 6.399 3 C 0.069 3.931 4 C -0.099 4.099 5 C 0.089 3.911 6 N -0.672 5.672 7 C 0.055 3.945 8 C -0.095 4.095 9 C -0.112 4.112 10 S -0.133 6.133 11 C -0.516 4.516 12 H 0.073 0.927 13 C 0.071 3.929 14 N -0.870 5.870 15 Si 0.918 3.082 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.147 4.147 20 C 0.042 3.958 21 O -0.376 6.376 22 C 0.019 3.981 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.344 0.656 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.267 0.733 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.568 -5.742 -21.932 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.319 6.319 3 C -0.007 4.007 4 C -0.137 4.137 5 C -0.003 4.003 6 N -0.304 5.304 7 C -0.075 4.075 8 C -0.134 4.134 9 C -0.262 4.262 10 S 0.096 5.904 11 C -0.664 4.664 12 H 0.091 0.909 13 C -0.138 4.138 14 N -0.506 5.506 15 Si 0.744 3.256 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.185 4.185 20 C -0.035 4.035 21 O -0.295 6.295 22 C -0.060 4.060 23 H 0.101 0.899 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.163 0.837 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.466 -5.078 -21.985 22.611 hybrid contribution 1.485 -1.236 1.359 2.362 sum 0.019 -6.314 -20.626 21.570 Atomic orbital electron populations 1.22699 0.81028 1.02481 1.00076 1.87820 1.19742 1.28759 1.95533 1.22445 0.93049 0.83932 1.01295 1.21504 0.94327 0.94480 1.03411 1.22224 0.92005 0.93752 0.92365 1.60687 1.63017 1.05118 1.01563 1.22160 0.98579 0.99312 0.87428 1.21250 1.02433 0.97810 0.91918 1.23212 1.02557 1.02727 0.97662 1.84621 1.80025 1.27747 0.98057 1.22734 1.45455 1.06949 0.91262 0.90919 1.25016 0.94824 0.95197 0.98760 1.70032 1.40270 1.16139 1.24109 0.86117 0.78408 0.79588 0.81442 1.19594 1.20564 1.20551 1.23265 0.98618 1.01169 0.95415 1.23608 0.86897 0.93003 0.99960 1.88886 1.43661 1.61857 1.35094 1.24047 0.94339 1.00769 0.86871 0.89889 0.93808 0.94326 0.91622 0.93516 0.90591 0.90723 0.83737 0.94850 0.90525 0.90744 0.91824 0.92085 0.92318 0.92362 0.89749 0.88916 0.92092 0.88851 0.91841 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.40 -4.70 10.70 -35.23 -0.38 -5.07 16 3 C 0.07 0.73 5.58 37.16 0.21 0.93 16 4 C -0.10 -0.99 3.83 -26.73 -0.10 -1.09 16 5 C 0.09 0.82 0.53 -130.07 -0.07 0.76 16 6 N -0.67 -6.92 5.29 -98.42 -0.52 -7.44 16 7 C 0.06 0.68 4.90 -3.82 -0.02 0.66 16 8 C -0.10 -1.48 5.44 -26.73 -0.15 -1.62 16 9 C -0.11 -2.23 5.67 37.15 0.21 -2.02 16 10 S -0.13 -3.46 21.44 -107.50 -2.30 -5.76 16 11 C -0.52 -14.82 9.50 30.94 0.29 -14.53 16 12 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 13 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 14 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 15 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.15 -1.15 5.47 -24.73 -0.14 -1.28 16 20 C 0.04 0.34 7.72 38.21 0.29 0.64 16 21 O -0.38 -4.22 11.52 -35.23 -0.41 -4.62 16 22 C 0.02 0.19 6.45 37.73 0.24 0.43 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.77 7.46 -51.93 -0.39 0.38 16 27 H 0.05 0.44 7.38 -51.93 -0.38 0.06 16 28 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.07 0.80 6.83 -51.93 -0.35 0.45 16 30 H 0.34 3.35 8.67 -39.29 -0.34 3.01 16 31 H 0.03 0.41 6.47 -51.93 -0.34 0.07 16 32 H 0.08 0.99 6.52 -51.93 -0.34 0.65 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 36 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 0.63 7.83 -51.93 -0.41 0.22 16 39 H 0.09 0.67 8.06 -51.93 -0.42 0.25 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.68 6.71 -51.93 -0.35 0.33 16 43 H 0.09 0.87 7.69 -51.93 -0.40 0.47 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -31.71 355.72 -8.22 -39.93 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.48 Total: 0.10 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 1.80 Total: -13.78 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.21 Total: -32.70 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.78 Total: -9.70 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.30 Total: -5.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.71 -8.22 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447393501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.707 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds