Wall clock time and date at job start Tue Mar 31 2020 07:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99536 * 2 1 4 4 C 1.53003 * 109.47020 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47398 * 175.45640 * 4 3 2 6 6 N 1.46910 * 110.43379 * 55.58857 * 5 4 3 7 7 C 1.46898 * 110.99943 * 59.57900 * 6 5 4 8 8 C 1.53002 * 109.47227 * 175.97385 * 7 6 5 9 9 C 1.52993 * 109.47409 * 180.02562 * 8 7 6 10 10 S 1.80999 * 109.47167 * 180.02562 * 9 8 7 11 11 C 1.76203 * 99.99848 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00447 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99718 * 180.02562 * 11 10 9 14 14 N 1.31632 * 120.00316 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00050 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47063 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47674 * 119.99681 * 15 13 11 18 18 H 1.48503 * 109.47087 * 240.00223 * 15 13 11 19 19 C 1.54807 * 110.60508 * 292.96533 * 5 4 3 20 20 C 1.54993 * 102.09274 * 220.38520 * 19 5 4 21 21 O 1.44377 * 103.49223 * 37.02294 * 20 19 5 22 22 C 1.43750 * 106.97392 * 319.94034 * 21 20 19 23 23 H 1.08996 * 109.46736 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47151 * 300.00241 * 1 2 3 25 25 H 1.08995 * 109.47112 * 60.00372 * 1 2 3 26 26 H 1.09003 * 109.47255 * 60.00288 * 3 2 1 27 27 H 1.08999 * 109.47421 * 299.99636 * 3 2 1 28 28 H 1.09001 * 109.47251 * 55.45857 * 4 3 2 29 29 H 1.08999 * 109.47016 * 295.46262 * 4 3 2 30 30 H 1.00895 * 110.99929 * 183.53120 * 6 5 4 31 31 H 1.08999 * 109.47033 * 55.97831 * 7 6 5 32 32 H 1.09002 * 109.47477 * 295.97288 * 7 6 5 33 33 H 1.09000 * 109.46850 * 59.99493 * 8 7 6 34 34 H 1.09002 * 109.46813 * 300.00310 * 8 7 6 35 35 H 1.09002 * 109.47125 * 299.99799 * 9 8 7 36 36 H 1.08994 * 109.47346 * 59.99758 * 9 8 7 37 37 H 0.97003 * 120.00226 * 180.02562 * 14 13 11 38 38 H 1.09000 * 110.90586 * 338.58730 * 19 5 4 39 39 H 1.09000 * 110.90629 * 102.18530 * 19 5 4 40 40 H 1.08999 * 110.62249 * 278.51967 * 20 19 5 41 41 H 1.09000 * 110.75176 * 155.58865 * 20 19 5 42 42 H 1.08995 * 109.87075 * 267.08698 * 22 21 20 43 43 H 1.08994 * 110.00266 * 146.00832 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1574 2.5779 -0.1136 6 7 3.6617 3.4505 0.9593 7 6 3.9909 2.8991 2.2805 8 6 3.5490 3.8811 3.3675 9 6 3.8924 3.3072 4.7435 10 16 3.3690 4.4686 6.0293 11 6 3.8704 3.5804 7.4662 12 1 4.3459 2.6160 7.3664 13 6 3.6541 4.1204 8.7264 14 7 3.0740 5.2958 8.8482 15 14 4.1862 3.1793 10.2497 16 1 4.8088 1.8933 9.8448 17 1 5.1708 3.9878 11.0125 18 1 3.0014 2.9080 11.1030 19 6 3.8545 3.1978 -1.4995 20 6 5.2010 3.8799 -1.8514 21 8 6.1886 2.9641 -1.3313 22 6 5.6950 2.4875 -0.0681 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8520 0.5751 -0.8456 29 1 3.8624 0.7159 0.9287 30 1 4.0218 4.3876 0.8587 31 1 5.0670 2.7403 2.3501 32 1 3.4737 1.9493 2.4171 33 1 2.4730 4.0401 3.2978 34 1 4.0662 4.8309 3.2310 35 1 3.3756 2.3573 4.8803 36 1 4.9685 3.1486 4.8128 37 1 2.9232 5.6733 9.7289 38 1 3.6088 2.4237 -2.2265 39 1 3.0526 3.9327 -1.4300 40 1 5.2802 4.8495 -1.3598 41 1 5.3087 3.9882 -2.9306 42 1 6.0793 3.1112 0.7389 43 1 6.0011 1.4528 0.0854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447393501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:02 Heat of formation + Delta-G solvation = -129.530031 kcal Electronic energy + Delta-G solvation = -21160.963361 eV Core-core repulsion = 17944.945987 eV Total energy + Delta-G solvation = -3216.017374 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24242 -38.74841 -37.44213 -34.90091 -34.59541 -31.89412 -31.17167 -29.12405 -27.83358 -27.10284 -26.02094 -23.97543 -23.69411 -22.28006 -20.47491 -19.54900 -17.85188 -17.42535 -17.13700 -16.90749 -16.87881 -16.54986 -16.31760 -15.89071 -15.73815 -15.39505 -15.18892 -14.67975 -14.22099 -13.98206 -13.69170 -13.54480 -13.21684 -13.13143 -12.95626 -12.87530 -12.58398 -12.48986 -12.36028 -12.19721 -12.00709 -11.97056 -11.88536 -11.51657 -11.31971 -11.16217 -10.71428 -10.55622 -10.32719 -9.46463 -8.66998 -8.38552 -6.14454 1.31024 1.37452 1.48567 1.73877 2.27231 2.73385 2.87390 2.95810 3.17077 3.33847 3.49682 3.72032 3.91413 3.99825 4.11947 4.20784 4.22806 4.26138 4.29492 4.40382 4.47522 4.53858 4.57295 4.60332 4.69103 4.73296 4.75625 4.78216 4.84786 4.87942 4.92041 5.05887 5.06513 5.13275 5.20289 5.30632 5.39128 5.78769 5.98161 6.17311 6.27486 6.36193 7.04072 8.71039 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.003184 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.774935 B = 8793.054782 C = 9745.024043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.421 6.421 3 C 0.072 3.928 4 C -0.097 4.097 5 C 0.094 3.906 6 N -0.668 5.668 7 C 0.070 3.930 8 C -0.083 4.083 9 C -0.089 4.089 10 S -0.195 6.195 11 C -0.539 4.539 12 H 0.071 0.929 13 C 0.016 3.984 14 N -0.907 5.907 15 Si 0.993 3.007 16 H -0.263 1.263 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.139 4.139 20 C 0.038 3.962 21 O -0.398 6.398 22 C 0.019 3.981 23 H 0.095 0.905 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.349 0.651 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.272 0.728 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.057 0.943 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -6.509 -22.919 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.341 6.341 3 C -0.004 4.004 4 C -0.135 4.135 5 C 0.002 3.998 6 N -0.300 5.300 7 C -0.061 4.061 8 C -0.122 4.122 9 C -0.238 4.238 10 S 0.034 5.966 11 C -0.687 4.687 12 H 0.089 0.911 13 C -0.189 4.189 14 N -0.543 5.543 15 Si 0.815 3.185 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.177 4.177 20 C -0.038 4.038 21 O -0.317 6.317 22 C -0.060 4.060 23 H 0.113 0.887 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.075 0.925 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.254 -5.837 -22.989 23.752 hybrid contribution 1.400 -0.997 1.561 2.322 sum 0.146 -6.834 -21.428 22.492 Atomic orbital electron populations 1.22862 0.79796 1.03554 1.00611 1.87790 1.21232 1.29434 1.95640 1.22422 0.93206 0.83591 1.01160 1.21482 0.94118 0.94782 1.03081 1.22190 0.91426 0.93367 0.92797 1.60633 1.63098 1.05551 1.00761 1.21892 0.98596 0.98068 0.87536 1.21124 1.02124 0.98512 0.90414 1.23150 1.02313 1.00943 0.97403 1.84596 1.80843 1.30936 1.00255 1.23077 1.45856 1.07176 0.92581 0.91068 1.26052 0.94525 0.96119 1.02208 1.70156 1.41207 1.17766 1.25205 0.84981 0.78290 0.78290 0.76902 1.18748 1.19611 1.19629 1.23242 0.98746 1.01455 0.94243 1.23800 0.86321 0.92706 1.01009 1.88867 1.44907 1.62569 1.35315 1.24028 0.94745 1.00639 0.86609 0.88669 0.94131 0.92900 0.93040 0.92248 0.90086 0.91807 0.83096 0.94456 0.90841 0.91312 0.91587 0.92161 0.92125 0.91944 0.89000 0.87966 0.91556 0.87182 0.92505 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.42 -9.43 10.70 -148.98 -1.59 -11.02 16 3 C 0.07 1.42 5.58 71.98 0.40 1.82 16 4 C -0.10 -1.79 3.83 30.59 0.12 -1.67 16 5 C 0.09 1.59 0.53 4.51 0.00 1.59 16 6 N -0.67 -12.70 5.29 -465.29 -2.46 -15.16 16 7 C 0.07 1.64 4.90 86.30 0.42 2.06 16 8 C -0.08 -2.51 5.44 30.59 0.17 -2.35 16 9 C -0.09 -3.51 5.67 71.98 0.41 -3.10 16 10 S -0.19 -10.35 21.44 -56.49 -1.21 -11.57 16 11 C -0.54 -31.33 9.50 67.95 0.65 -30.68 16 12 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 13 C 0.02 0.91 5.49 84.86 0.47 1.37 16 14 N -0.91 -54.81 13.22 21.65 0.29 -54.52 16 15 Si 0.99 44.10 29.55 68.60 2.03 46.13 16 16 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 C -0.14 -1.83 5.47 31.89 0.17 -1.66 16 20 C 0.04 0.53 7.72 72.66 0.56 1.09 16 21 O -0.40 -8.28 11.52 -148.98 -1.72 -10.00 16 22 C 0.02 0.36 6.45 72.35 0.47 0.82 16 23 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 26 H 0.05 1.15 7.46 -2.39 -0.02 1.13 16 27 H 0.06 1.00 7.38 -2.39 -0.02 0.98 16 28 H 0.08 1.42 8.07 -2.39 -0.02 1.41 16 29 H 0.06 1.31 6.83 -2.39 -0.02 1.30 16 30 H 0.35 6.16 8.67 -89.70 -0.78 5.39 16 31 H 0.04 0.87 6.47 -2.39 -0.02 0.85 16 32 H 0.07 1.82 6.52 -2.39 -0.02 1.80 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.06 2.37 8.14 -2.40 -0.02 2.35 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.09 1.12 7.83 -2.39 -0.02 1.10 16 39 H 0.10 1.19 8.06 -2.39 -0.02 1.17 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.15 6.71 -2.39 -0.02 1.14 16 43 H 0.09 1.65 7.69 -2.39 -0.02 1.63 16 Total: -1.00 -68.20 355.72 0.61 -67.59 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.20 Total: 17.53 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 5.08 Total: -28.98 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -2.18 Total: -69.68 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -3.31 Total: -21.02 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -10.35 SS G_CDS: -1.21 Total: -11.57 kcal Total: -68.20 0.61 -67.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447393501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.939 kcal (2) G-P(sol) polarization free energy of solvation -68.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds