Wall clock time and date at job start Tue Mar 31 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47131 * 2 1 4 4 C 1.46501 * 120.00176 * 270.00291 * 3 2 1 5 5 C 1.50697 * 109.46814 * 269.99731 * 4 3 2 6 6 H 1.08002 * 120.00210 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99742 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99833 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47016 * 60.00197 * 9 7 5 11 11 H 1.48493 * 109.47001 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47106 * 300.00142 * 9 7 5 13 13 C 1.34776 * 120.00129 * 89.99781 * 3 2 1 14 14 O 1.21280 * 120.00347 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99934 * 0.02562 * 13 3 2 16 16 H 1.09002 * 110.66868 * 304.30001 * 15 13 3 17 17 C 1.54704 * 110.90274 * 67.62890 * 15 13 3 18 18 C 1.51641 * 101.92905 * 93.11840 * 17 15 13 19 19 C 1.37744 * 132.16589 * 195.88945 * 18 17 15 20 20 C 1.38352 * 119.97561 * 179.03545 * 19 18 17 21 21 C 1.38285 * 119.76659 * 359.97438 * 20 19 18 22 22 C 1.37933 * 120.35075 * 0.19598 * 21 20 19 23 23 C 1.50707 * 119.87780 * 180.02562 * 22 21 20 24 24 C 1.38878 * 107.04201 * 15.36915 * 18 17 15 25 25 O 1.36138 * 111.23515 * 1.08906 * 24 18 17 26 26 H 1.09001 * 109.46909 * 60.00169 * 1 2 3 27 27 H 1.08999 * 109.46813 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47332 * 299.99658 * 1 2 3 29 29 H 1.09001 * 109.47332 * 240.00341 * 2 1 3 30 30 H 1.09002 * 109.47409 * 119.99673 * 2 1 3 31 31 H 1.09005 * 109.46849 * 29.99683 * 4 3 2 32 32 H 1.08998 * 109.47591 * 149.99537 * 4 3 2 33 33 H 0.97010 * 119.99415 * 180.02562 * 8 7 5 34 34 H 1.09003 * 110.93866 * 211.27701 * 17 15 13 35 35 H 1.09004 * 110.93796 * 334.95700 * 17 15 13 36 36 H 1.07999 * 120.01189 * 359.05901 * 19 18 17 37 37 H 1.08004 * 120.11538 * 179.97438 * 20 19 18 38 38 H 1.07995 * 119.82153 * 180.16675 * 21 20 19 39 39 H 1.08998 * 109.46458 * 269.98550 * 23 22 21 40 40 H 1.09000 * 109.46986 * 29.98614 * 23 22 21 41 41 H 1.08998 * 109.47265 * 149.98669 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1490 2.3898 -2.8780 8 7 3.3489 3.1259 -3.6180 9 14 5.9135 2.0969 -3.4168 10 1 6.1417 0.6402 -3.5936 11 1 6.1609 2.7969 -4.7029 12 1 6.8406 2.6212 -2.3821 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3060 2.4723 16 1 0.9681 0.9358 2.5183 17 6 3.0020 0.1516 2.6751 18 6 4.0989 0.8309 3.4718 19 6 5.4015 0.4742 3.7424 20 6 6.2045 1.3101 4.4978 21 6 5.6945 2.5024 4.9779 22 6 4.3893 2.8599 4.7111 23 6 3.8446 4.1621 5.2392 24 6 3.5728 2.0217 3.9556 25 8 2.2713 2.1720 3.5855 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5816 1.6877 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6749 3.5158 -4.4444 34 1 2.5538 -0.6624 3.2448 35 1 3.3808 -0.2072 1.7180 36 1 5.7960 -0.4575 3.3647 37 1 7.2261 1.0324 4.7116 38 1 6.3213 3.1569 5.5654 39 1 3.4073 3.9999 6.2244 40 1 4.6526 4.8896 5.3155 41 1 3.0799 4.5383 4.5597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449797145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:41 Heat of formation + Delta-G solvation = -40.489803 kcal Electronic energy + Delta-G solvation = -23617.449866 eV Core-core repulsion = 20269.849614 eV Total energy + Delta-G solvation = -3347.600252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33982 -38.80758 -37.18098 -35.38557 -33.48117 -32.79284 -31.00033 -30.19545 -29.60972 -27.03432 -26.65839 -24.42198 -23.16326 -22.30721 -21.84264 -20.77162 -18.97719 -17.17487 -16.74992 -16.56519 -16.39550 -15.43543 -15.19349 -14.89663 -14.34212 -14.05745 -13.70517 -13.55405 -13.36417 -13.20545 -13.01792 -12.80738 -12.39005 -12.32968 -12.16809 -11.96672 -11.80231 -11.39651 -11.36191 -11.24661 -11.15918 -10.93461 -10.80763 -10.64912 -10.48946 -10.14915 -9.67871 -9.03150 -8.55257 -8.44616 -7.87080 -7.73475 -6.05850 -4.10609 1.40111 1.50180 3.12788 3.30197 3.32701 3.35396 3.40999 3.83841 3.89063 4.42373 4.47346 4.58958 4.84527 4.91851 5.03665 5.22049 5.27683 5.29189 5.32628 5.38081 5.53186 5.56766 5.60190 5.69660 5.74080 5.76485 5.82868 5.95809 6.01191 6.16889 6.33360 6.41760 6.46822 6.51814 6.62099 6.71303 7.00692 7.31676 7.40848 7.49094 7.90047 8.20834 8.32108 8.85554 9.00638 9.54290 11.02278 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.005772 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.906365 B = 4849.881403 C = 5742.690556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.491 3.509 14 O -0.520 6.520 15 C 0.062 3.938 16 H 0.133 0.867 17 C -0.102 4.102 18 C -0.168 4.168 19 C -0.074 4.074 20 C -0.148 4.148 21 C -0.090 4.090 22 C -0.101 4.101 23 C -0.108 4.108 24 C 0.118 3.882 25 O -0.276 6.276 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -8.068 15.481 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.275 3.725 14 O -0.395 6.395 15 C 0.002 3.998 16 H 0.150 0.850 17 C -0.139 4.139 18 C -0.169 4.169 19 C -0.092 4.092 20 C -0.167 4.167 21 C -0.108 4.108 22 C -0.101 4.101 23 C -0.165 4.165 24 C 0.073 3.927 25 O -0.189 6.189 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.229 -7.174 15.369 17.005 hybrid contribution 0.974 -0.344 -0.667 1.229 sum -0.255 -7.519 14.702 16.515 Atomic orbital electron populations 1.22237 0.96600 1.01601 1.02470 1.21672 0.93807 0.84300 1.03213 1.48233 1.63629 1.13230 1.07397 1.19297 0.96374 0.93663 0.77824 1.21370 0.96837 1.32111 1.06242 0.92571 1.24924 0.97822 0.94876 0.96382 1.69925 1.35731 1.33320 1.14339 0.86575 0.84856 0.78259 0.77861 1.20215 1.21118 1.20167 1.20442 0.79547 0.87412 0.85062 1.90709 1.44516 1.17619 1.86674 1.23454 1.01574 0.88703 0.86102 0.84984 1.21872 0.93365 0.97245 1.01436 1.20705 0.96111 0.96291 1.03802 1.20236 0.91558 0.99771 0.97648 1.20946 0.99825 0.95355 1.00528 1.20733 0.93684 0.96842 0.99576 1.19112 0.92759 0.96319 1.01934 1.20672 1.01488 0.93499 1.00810 1.19349 0.84342 0.93166 0.95853 1.86867 1.23132 1.63730 1.45128 0.91822 0.91934 0.93094 0.89569 0.91231 0.94785 0.93898 0.92639 0.88373 0.87849 0.85912 0.85668 0.85431 0.91661 0.91628 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.20 37.16 0.38 -1.78 16 2 C 0.09 1.43 5.57 -4.04 -0.02 1.41 16 3 N -0.59 -12.37 2.45 -175.06 -0.43 -12.80 16 4 C 0.25 6.45 5.16 -5.19 -0.03 6.43 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.49 10.57 6.97 -10.98 -0.08 10.50 16 14 O -0.52 -13.89 16.07 -13.51 -0.22 -14.11 16 15 C 0.06 1.01 3.20 -26.99 -0.09 0.92 16 16 H 0.13 1.69 7.04 -51.93 -0.37 1.32 16 17 C -0.10 -1.42 5.34 -26.52 -0.14 -1.56 16 18 C -0.17 -2.68 6.26 -104.10 -0.65 -3.33 16 19 C -0.07 -1.04 10.03 -39.72 -0.40 -1.44 16 20 C -0.15 -1.92 10.07 -39.52 -0.40 -2.32 16 21 C -0.09 -1.21 9.66 -39.68 -0.38 -1.59 16 22 C -0.10 -1.57 5.90 -104.34 -0.62 -2.19 16 23 C -0.11 -1.46 9.98 36.01 0.36 -1.10 16 24 C 0.12 2.06 6.57 -38.95 -0.26 1.81 16 25 O -0.28 -5.01 10.29 -39.24 -0.40 -5.41 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.61 7.19 -51.93 -0.37 0.23 16 29 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.07 0.86 4.49 -51.93 -0.23 0.63 16 31 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.48 6.33 -51.93 -0.33 1.15 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.07 1.11 8.01 -51.93 -0.42 0.69 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -34.94 340.30 -8.81 -43.75 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.87 Total: 0.21 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.74 Total: -7.84 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.31 Total: -38.72 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.62 Total: -19.52 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.94 -8.81 -43.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449797145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.259 kcal (2) G-P(sol) polarization free energy of solvation -34.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds