Wall clock time and date at job start Tue Mar 31 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47131 * 2 1 4 4 C 1.46501 * 120.00176 * 270.00291 * 3 2 1 5 5 C 1.50697 * 109.46814 * 269.99731 * 4 3 2 6 6 H 1.08002 * 120.00210 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99742 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99815 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99833 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47016 * 60.00197 * 9 7 5 11 11 H 1.48493 * 109.47001 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47106 * 300.00142 * 9 7 5 13 13 C 1.34776 * 120.00129 * 89.99781 * 3 2 1 14 14 O 1.21280 * 120.00347 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99934 * 0.02562 * 13 3 2 16 16 H 1.09002 * 110.66868 * 304.30001 * 15 13 3 17 17 C 1.54704 * 110.90274 * 67.62890 * 15 13 3 18 18 C 1.51641 * 101.92905 * 93.11840 * 17 15 13 19 19 C 1.37744 * 132.16589 * 195.88945 * 18 17 15 20 20 C 1.38352 * 119.97561 * 179.03545 * 19 18 17 21 21 C 1.38285 * 119.76659 * 359.97438 * 20 19 18 22 22 C 1.37933 * 120.35075 * 0.19598 * 21 20 19 23 23 C 1.50707 * 119.87780 * 180.02562 * 22 21 20 24 24 C 1.38878 * 107.04201 * 15.36915 * 18 17 15 25 25 O 1.36138 * 111.23515 * 1.08906 * 24 18 17 26 26 H 1.09001 * 109.46909 * 60.00169 * 1 2 3 27 27 H 1.08999 * 109.46813 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47332 * 299.99658 * 1 2 3 29 29 H 1.09001 * 109.47332 * 240.00341 * 2 1 3 30 30 H 1.09002 * 109.47409 * 119.99673 * 2 1 3 31 31 H 1.09005 * 109.46849 * 29.99683 * 4 3 2 32 32 H 1.08998 * 109.47591 * 149.99537 * 4 3 2 33 33 H 0.97010 * 119.99415 * 180.02562 * 8 7 5 34 34 H 1.09003 * 110.93866 * 211.27701 * 17 15 13 35 35 H 1.09004 * 110.93796 * 334.95700 * 17 15 13 36 36 H 1.07999 * 120.01189 * 359.05901 * 19 18 17 37 37 H 1.08004 * 120.11538 * 179.97438 * 20 19 18 38 38 H 1.07995 * 119.82153 * 180.16675 * 21 20 19 39 39 H 1.08998 * 109.46458 * 269.98550 * 23 22 21 40 40 H 1.09000 * 109.46986 * 29.98614 * 23 22 21 41 41 H 1.08998 * 109.47265 * 149.98669 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1490 2.3898 -2.8780 8 7 3.3489 3.1259 -3.6180 9 14 5.9135 2.0969 -3.4168 10 1 6.1417 0.6402 -3.5936 11 1 6.1609 2.7969 -4.7029 12 1 6.8406 2.6212 -2.3821 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3060 2.4723 16 1 0.9681 0.9358 2.5183 17 6 3.0020 0.1516 2.6751 18 6 4.0989 0.8309 3.4718 19 6 5.4015 0.4742 3.7424 20 6 6.2045 1.3101 4.4978 21 6 5.6945 2.5024 4.9779 22 6 4.3893 2.8599 4.7111 23 6 3.8446 4.1621 5.2392 24 6 3.5728 2.0217 3.9556 25 8 2.2713 2.1720 3.5855 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5816 1.6877 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6749 3.5158 -4.4444 34 1 2.5538 -0.6624 3.2448 35 1 3.3808 -0.2072 1.7180 36 1 5.7960 -0.4575 3.3647 37 1 7.2261 1.0324 4.7116 38 1 6.3213 3.1569 5.5654 39 1 3.4073 3.9999 6.2244 40 1 4.6526 4.8896 5.3155 41 1 3.0799 4.5383 4.5597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449797145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:40 Heat of formation + Delta-G solvation = -61.723150 kcal Electronic energy + Delta-G solvation = -23618.370613 eV Core-core repulsion = 20269.849614 eV Total energy + Delta-G solvation = -3348.520999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.58100 -40.33621 -38.38417 -37.07395 -35.06340 -34.43820 -32.19269 -31.66604 -30.84595 -28.90847 -27.72097 -25.92405 -24.80942 -23.65649 -23.05874 -21.87741 -20.51286 -18.68366 -18.46839 -18.08733 -17.80836 -16.92063 -16.59662 -16.28286 -16.05645 -15.50113 -14.95147 -14.81591 -14.53850 -14.50541 -14.39664 -14.00331 -13.88553 -13.69238 -13.42027 -13.33673 -13.19290 -13.10760 -12.74337 -12.62522 -12.55182 -12.42049 -12.33849 -12.17070 -11.90552 -11.77988 -11.65360 -10.67598 -10.66759 -9.62049 -9.52730 -9.05528 -8.25415 -6.40137 0.32659 0.38958 1.33296 1.38272 1.45112 1.60288 1.97968 2.34463 2.43543 2.76339 3.04324 3.32706 3.40778 3.51493 3.85918 4.03508 4.09182 4.16868 4.28265 4.38131 4.39380 4.51291 4.56741 4.64106 4.70618 4.74888 4.75879 4.90586 4.96008 4.96756 5.03102 5.17135 5.26044 5.38065 5.40858 5.46198 5.52913 5.54634 5.65088 5.80091 6.02293 6.19267 6.63067 6.70286 7.21998 7.36940 8.81836 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.005772 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.906365 B = 4849.881403 C = 5742.690556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.086 3.914 3 N -0.592 5.592 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.256 1.256 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.480 3.520 14 O -0.589 6.589 15 C 0.068 3.932 16 H 0.173 0.827 17 C -0.093 4.093 18 C -0.186 4.186 19 C -0.086 4.086 20 C -0.145 4.145 21 C -0.095 4.095 22 C -0.124 4.124 23 C -0.105 4.105 24 C 0.074 3.926 25 O -0.296 6.296 26 H 0.039 0.961 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.028 0.972 32 H -0.009 1.009 33 H 0.267 0.733 34 H 0.145 0.855 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 -10.898 16.922 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.036 4.036 3 N -0.324 5.324 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.180 1.180 11 H -0.202 1.202 12 H -0.207 1.207 13 C 0.268 3.732 14 O -0.469 6.469 15 C 0.009 3.991 16 H 0.189 0.811 17 C -0.130 4.130 18 C -0.187 4.187 19 C -0.104 4.104 20 C -0.163 4.163 21 C -0.113 4.113 22 C -0.125 4.125 23 C -0.161 4.161 24 C 0.029 3.971 25 O -0.209 6.209 26 H 0.058 0.942 27 H 0.120 0.880 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.046 0.954 32 H 0.010 0.990 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.118 0.882 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.082 -10.069 16.822 19.605 hybrid contribution 0.571 0.566 -1.083 1.349 sum 0.653 -9.503 15.739 18.397 Atomic orbital electron populations 1.22195 0.94266 1.03963 1.01823 1.22068 0.95714 0.81041 1.04745 1.48237 1.63308 1.15232 1.05659 1.18734 0.95574 0.91346 0.80235 1.21637 0.97733 1.32212 1.06473 0.92883 1.25861 1.02395 0.94424 0.96434 1.70050 1.37846 1.34090 1.14784 0.85501 0.78946 0.79289 0.77314 1.17989 1.20233 1.20651 1.21551 0.77931 0.86868 0.86876 1.90662 1.47608 1.20767 1.87857 1.23580 1.04411 0.88571 0.82541 0.81057 1.21962 0.92255 0.97091 1.01657 1.21096 0.97340 0.96187 1.04095 1.20661 0.91007 1.01018 0.97689 1.21435 1.01165 0.94643 0.99034 1.21147 0.93013 0.97630 0.99508 1.19585 0.93801 0.96886 1.02229 1.20666 1.01283 0.93276 1.00903 1.19802 0.84564 0.94796 0.97895 1.86835 1.24024 1.64752 1.45295 0.94218 0.87954 0.92081 0.90279 0.87429 0.95436 0.99048 0.92373 0.83688 0.88196 0.83443 0.82356 0.82507 0.89716 0.89880 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 10.20 71.98 0.73 -3.07 16 2 C 0.09 2.49 5.57 86.38 0.48 2.97 16 3 N -0.59 -25.32 2.45 -826.14 -2.02 -27.35 16 4 C 0.26 14.43 5.16 85.63 0.44 14.88 16 5 C -0.54 -31.68 9.39 25.60 0.24 -31.44 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.46 5.46 84.66 0.46 0.93 16 8 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 9 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 C 0.48 21.28 6.97 87.66 0.61 21.89 16 14 O -0.59 -33.53 16.07 15.20 0.24 -33.28 16 15 C 0.07 2.16 3.20 30.43 0.10 2.26 16 16 H 0.17 3.91 7.04 -2.39 -0.02 3.89 16 17 C -0.09 -2.34 5.34 30.73 0.16 -2.17 16 18 C -0.19 -5.65 6.26 -19.53 -0.12 -5.77 16 19 C -0.09 -2.20 10.03 22.18 0.22 -1.98 16 20 C -0.14 -3.35 10.07 22.31 0.22 -3.12 16 21 C -0.10 -2.37 9.66 22.21 0.21 -2.16 16 22 C -0.12 -3.86 5.90 -19.68 -0.12 -3.98 16 23 C -0.10 -2.85 9.98 71.24 0.71 -2.14 16 24 C 0.07 2.58 6.57 22.68 0.15 2.73 16 25 O -0.30 -10.85 10.29 -76.89 -0.79 -11.64 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.29 7.19 -2.39 -0.02 1.28 16 29 H 0.08 2.41 8.07 -2.39 -0.02 2.40 16 30 H 0.11 2.30 4.49 -2.39 -0.01 2.29 16 31 H 0.03 1.52 8.07 -2.38 -0.02 1.50 16 32 H -0.01 -0.56 7.42 -2.39 -0.02 -0.57 16 33 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 34 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.10 2.58 6.33 -2.39 -0.02 2.57 16 36 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 37 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 41 H 0.04 1.36 8.01 -2.39 -0.02 1.35 16 Total: -1.00 -82.67 340.30 5.28 -77.39 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 1.02 Total: 14.33 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 4.52 Total: -10.17 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -1.74 Total: -84.03 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -0.55 Total: -44.93 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -82.67 5.28 -77.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449797145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.665 kcal (2) G-P(sol) polarization free energy of solvation -82.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds