Wall clock time and date at job start Tue Mar 31 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47229 * 2 1 4 4 C 1.46507 * 119.99791 * 274.94479 * 3 2 1 5 5 C 1.50696 * 109.47143 * 270.00056 * 4 3 2 6 6 H 1.07996 * 120.00243 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99758 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00233 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99838 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47248 * 90.00275 * 9 7 5 11 11 H 1.48497 * 109.47291 * 210.00245 * 9 7 5 12 12 H 1.48501 * 109.47417 * 330.00121 * 9 7 5 13 13 C 1.34778 * 120.00266 * 94.94658 * 3 2 1 14 14 O 1.21272 * 119.99715 * 5.08983 * 13 3 2 15 15 C 1.50701 * 120.00018 * 185.08961 * 13 3 2 16 16 H 1.08996 * 110.66786 * 53.23618 * 15 13 3 17 17 C 1.54705 * 110.75077 * 290.01554 * 15 13 3 18 18 C 1.51643 * 101.94183 * 216.45084 * 17 15 13 19 19 C 1.37748 * 132.16890 * 195.60676 * 18 17 15 20 20 C 1.38346 * 119.97831 * 178.85445 * 19 18 17 21 21 C 1.38291 * 119.76734 * 0.52619 * 20 19 18 22 22 C 1.37931 * 120.35042 * 359.63697 * 21 20 19 23 23 C 1.50703 * 119.88280 * 180.27424 * 22 21 20 24 24 C 1.38885 * 107.04656 * 15.14274 * 18 17 15 25 25 O 1.36137 * 111.21744 * 1.43155 * 24 18 17 26 26 H 1.09001 * 109.47330 * 175.00391 * 1 2 3 27 27 H 1.08990 * 109.47279 * 295.00839 * 1 2 3 28 28 H 1.09004 * 109.46744 * 55.01189 * 1 2 3 29 29 H 1.09004 * 109.47182 * 239.99751 * 2 1 3 30 30 H 1.09002 * 109.46750 * 119.99949 * 2 1 3 31 31 H 1.09000 * 109.47115 * 30.00458 * 4 3 2 32 32 H 1.09004 * 109.46842 * 150.00190 * 4 3 2 33 33 H 0.97003 * 120.00168 * 180.02562 * 8 7 5 34 34 H 1.09001 * 110.93371 * 98.29168 * 17 15 13 35 35 H 1.08997 * 110.96967 * 334.62649 * 17 15 13 36 36 H 1.07997 * 120.00893 * 359.10864 * 19 18 17 37 37 H 1.07995 * 120.11512 * 180.25511 * 20 19 18 38 38 H 1.07993 * 119.82624 * 179.91038 * 21 20 19 39 39 H 1.08994 * 109.46858 * 89.99754 * 23 22 21 40 40 H 1.08997 * 109.47551 * 209.99969 * 23 22 21 41 41 H 1.09002 * 109.46540 * 330.00179 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1594 2.1082 -1.2641 5 6 3.5423 1.8856 -1.8200 6 1 4.2459 1.2651 -1.2850 7 6 3.9092 2.4743 -3.0116 8 7 3.0526 3.2304 -3.6628 9 14 5.6236 2.1989 -3.7003 10 1 5.6176 1.0024 -4.5797 11 1 6.0383 3.3887 -4.4862 12 1 6.5780 1.9869 -2.5825 13 6 2.3379 1.9830 1.1628 14 8 2.3097 1.3536 2.1991 15 6 2.7302 3.4380 1.1753 16 1 1.9727 4.0450 0.6796 17 6 4.1134 3.6384 0.5121 18 6 4.7131 4.7404 1.3639 19 6 5.7873 5.5801 1.1676 20 6 6.1050 6.5307 2.1212 21 6 5.3475 6.6262 3.2743 22 6 4.2736 5.7842 3.4745 23 6 3.4516 5.9016 4.7322 24 6 3.9462 4.8254 2.5187 25 8 2.9535 3.8938 2.5205 26 1 -0.3634 -1.0238 -0.0895 27 1 -0.3633 0.4344 0.9312 28 1 -0.3633 0.5893 -0.8420 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.4186 1.7453 -1.9766 32 1 2.0049 3.1731 -1.0899 33 1 3.3106 3.6442 -4.5013 34 1 4.0057 3.9615 -0.5234 35 1 4.7113 2.7291 0.5742 36 1 6.3788 5.4991 0.2677 37 1 6.9441 7.1929 1.9677 38 1 5.5955 7.3670 4.0200 39 1 2.6363 6.6063 4.5688 40 1 3.0417 4.9254 4.9909 41 1 4.0824 6.2583 5.5464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449797146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:44 Heat of formation + Delta-G solvation = -47.439391 kcal Electronic energy + Delta-G solvation = -23591.310267 eV Core-core repulsion = 20243.408659 eV Total energy + Delta-G solvation = -3347.901608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.03709 -38.96686 -37.11538 -35.32167 -33.35607 -32.84658 -31.21654 -30.42236 -28.86667 -27.20918 -26.59098 -24.26648 -23.17866 -22.22939 -21.68235 -20.47717 -18.60888 -17.31961 -16.71695 -16.54860 -16.21336 -15.70137 -15.10156 -14.68600 -14.40568 -14.13961 -13.57143 -13.39373 -13.25635 -13.04295 -12.67825 -12.61824 -12.40321 -12.33550 -12.09359 -11.94746 -11.72899 -11.59924 -11.27222 -11.10198 -11.03061 -10.87015 -10.72930 -10.54629 -10.46770 -10.17487 -9.84033 -9.12613 -8.65354 -8.44046 -7.85053 -7.78290 -6.28809 -4.35972 1.52073 1.59456 3.10907 3.15911 3.21807 3.24527 3.30829 3.86871 4.12226 4.25559 4.82393 4.91921 5.03423 5.06221 5.17656 5.29397 5.41991 5.46328 5.51114 5.61746 5.71903 5.74802 5.76569 5.82826 5.83654 6.01452 6.21543 6.28781 6.34626 6.41169 6.55552 6.58289 6.61772 6.63028 6.68005 6.76932 6.86169 7.06096 7.39130 7.50461 7.65856 7.92748 8.16968 8.66680 8.85803 9.31112 10.77499 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.006724 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.806098 B = 4163.417738 C = 5954.458281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.590 5.590 4 C 0.232 3.768 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.523 3.477 14 O -0.553 6.553 15 C 0.072 3.928 16 H 0.107 0.893 17 C -0.086 4.086 18 C -0.160 4.160 19 C -0.076 4.076 20 C -0.150 4.150 21 C -0.096 4.096 22 C -0.109 4.109 23 C -0.107 4.107 24 C 0.105 3.895 25 O -0.281 6.281 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.267 0.733 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 4.688 7.888 9.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.322 5.322 4 C 0.113 3.887 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.309 3.691 14 O -0.433 6.433 15 C 0.013 3.987 16 H 0.125 0.875 17 C -0.123 4.123 18 C -0.161 4.161 19 C -0.094 4.094 20 C -0.168 4.168 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.163 4.163 24 C 0.060 3.940 25 O -0.194 6.194 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.914 4.365 8.419 9.528 hybrid contribution 0.970 -0.095 -0.932 1.349 sum 1.885 4.270 7.487 8.823 Atomic orbital electron populations 1.22123 0.96673 1.01474 1.01986 1.21279 0.93464 0.83300 1.02835 1.48129 1.62638 1.13809 1.07604 1.19544 0.97766 0.92026 0.79404 1.21455 0.98213 1.31352 1.06610 0.91884 1.24904 0.97536 0.94762 0.96380 1.69913 1.34956 1.31437 1.16283 0.86582 0.84219 0.77969 0.79353 1.20444 1.20966 1.19585 1.19821 0.77480 0.87819 0.83956 1.90629 1.54216 1.65824 1.32582 1.23118 0.99867 0.94708 0.81015 0.87515 1.21869 0.92294 0.97049 1.01078 1.21090 0.97983 0.99630 0.97370 1.20324 0.95667 0.94133 0.99240 1.20943 1.01080 1.00163 0.94608 1.20665 0.94510 0.98417 0.97783 1.19048 0.99273 0.95659 0.96975 1.20653 0.98896 1.02819 0.93976 1.19474 0.89373 0.89994 0.95187 1.86861 1.52014 1.52148 1.28334 0.92201 0.92975 0.92301 0.90292 0.90670 0.94182 0.94530 0.92363 0.85736 0.88742 0.85767 0.85849 0.85658 0.91574 0.91295 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.24 37.16 0.38 -2.15 16 2 C 0.11 2.06 6.22 -4.05 -0.03 2.03 16 3 N -0.59 -12.11 2.46 -175.06 -0.43 -12.54 16 4 C 0.23 5.15 4.72 -5.19 -0.02 5.13 16 5 C -0.54 -12.88 6.80 -34.44 -0.23 -13.12 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -22.98 13.29 55.43 0.74 -22.24 16 9 Si 0.89 19.51 29.54 -169.99 -5.02 14.49 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.52 11.25 7.02 -10.98 -0.08 11.17 16 14 O -0.55 -13.23 16.06 -13.48 -0.22 -13.45 16 15 C 0.07 1.43 3.06 -26.99 -0.08 1.35 16 16 H 0.11 1.99 7.26 -51.93 -0.38 1.62 16 17 C -0.09 -1.67 4.71 -26.52 -0.12 -1.80 16 18 C -0.16 -2.88 6.27 -104.10 -0.65 -3.53 16 19 C -0.08 -1.17 10.03 -39.72 -0.40 -1.57 16 20 C -0.15 -1.99 10.07 -39.52 -0.40 -2.38 16 21 C -0.10 -1.25 9.66 -39.67 -0.38 -1.64 16 22 C -0.11 -1.66 5.90 -104.34 -0.62 -2.28 16 23 C -0.11 -1.35 9.98 36.01 0.36 -1.00 16 24 C 0.11 1.92 6.73 -38.95 -0.26 1.66 16 25 O -0.28 -5.68 10.26 -39.22 -0.40 -6.09 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 30 H 0.07 1.38 7.22 -51.93 -0.38 1.01 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 32 H 0.04 0.83 5.83 -51.93 -0.30 0.53 16 33 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.12 2.57 6.51 -51.93 -0.34 2.23 16 35 H 0.09 1.96 7.80 -51.93 -0.40 1.55 16 36 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.96 8.00 -51.93 -0.42 0.54 16 41 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -28.26 339.54 -8.83 -37.09 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.98 Total: 4.16 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.64 Total: -6.55 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.31 Total: -34.78 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.62 Total: -19.53 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.26 -8.83 -37.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449797146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.345 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds