Wall clock time and date at job start Tue Mar 31 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47229 * 2 1 4 4 C 1.46507 * 119.99791 * 274.94479 * 3 2 1 5 5 C 1.50696 * 109.47143 * 270.00056 * 4 3 2 6 6 H 1.07996 * 120.00243 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99758 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00233 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99838 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47248 * 90.00275 * 9 7 5 11 11 H 1.48497 * 109.47291 * 210.00245 * 9 7 5 12 12 H 1.48501 * 109.47417 * 330.00121 * 9 7 5 13 13 C 1.34778 * 120.00266 * 94.94658 * 3 2 1 14 14 O 1.21272 * 119.99715 * 5.08983 * 13 3 2 15 15 C 1.50701 * 120.00018 * 185.08961 * 13 3 2 16 16 H 1.08996 * 110.66786 * 53.23618 * 15 13 3 17 17 C 1.54705 * 110.75077 * 290.01554 * 15 13 3 18 18 C 1.51643 * 101.94183 * 216.45084 * 17 15 13 19 19 C 1.37748 * 132.16890 * 195.60676 * 18 17 15 20 20 C 1.38346 * 119.97831 * 178.85445 * 19 18 17 21 21 C 1.38291 * 119.76734 * 0.52619 * 20 19 18 22 22 C 1.37931 * 120.35042 * 359.63697 * 21 20 19 23 23 C 1.50703 * 119.88280 * 180.27424 * 22 21 20 24 24 C 1.38885 * 107.04656 * 15.14274 * 18 17 15 25 25 O 1.36137 * 111.21744 * 1.43155 * 24 18 17 26 26 H 1.09001 * 109.47330 * 175.00391 * 1 2 3 27 27 H 1.08990 * 109.47279 * 295.00839 * 1 2 3 28 28 H 1.09004 * 109.46744 * 55.01189 * 1 2 3 29 29 H 1.09004 * 109.47182 * 239.99751 * 2 1 3 30 30 H 1.09002 * 109.46750 * 119.99949 * 2 1 3 31 31 H 1.09000 * 109.47115 * 30.00458 * 4 3 2 32 32 H 1.09004 * 109.46842 * 150.00190 * 4 3 2 33 33 H 0.97003 * 120.00168 * 180.02562 * 8 7 5 34 34 H 1.09001 * 110.93371 * 98.29168 * 17 15 13 35 35 H 1.08997 * 110.96967 * 334.62649 * 17 15 13 36 36 H 1.07997 * 120.00893 * 359.10864 * 19 18 17 37 37 H 1.07995 * 120.11512 * 180.25511 * 20 19 18 38 38 H 1.07993 * 119.82624 * 179.91038 * 21 20 19 39 39 H 1.08994 * 109.46858 * 89.99754 * 23 22 21 40 40 H 1.08997 * 109.47551 * 209.99969 * 23 22 21 41 41 H 1.09002 * 109.46540 * 330.00179 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1594 2.1082 -1.2641 5 6 3.5423 1.8856 -1.8200 6 1 4.2459 1.2651 -1.2850 7 6 3.9092 2.4743 -3.0116 8 7 3.0526 3.2304 -3.6628 9 14 5.6236 2.1989 -3.7003 10 1 5.6176 1.0024 -4.5797 11 1 6.0383 3.3887 -4.4862 12 1 6.5780 1.9869 -2.5825 13 6 2.3379 1.9830 1.1628 14 8 2.3097 1.3536 2.1991 15 6 2.7302 3.4380 1.1753 16 1 1.9727 4.0450 0.6796 17 6 4.1134 3.6384 0.5121 18 6 4.7131 4.7404 1.3639 19 6 5.7873 5.5801 1.1676 20 6 6.1050 6.5307 2.1212 21 6 5.3475 6.6262 3.2743 22 6 4.2736 5.7842 3.4745 23 6 3.4516 5.9016 4.7322 24 6 3.9462 4.8254 2.5187 25 8 2.9535 3.8938 2.5205 26 1 -0.3634 -1.0238 -0.0895 27 1 -0.3633 0.4344 0.9312 28 1 -0.3633 0.5893 -0.8420 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.4186 1.7453 -1.9766 32 1 2.0049 3.1731 -1.0899 33 1 3.3106 3.6442 -4.5013 34 1 4.0057 3.9615 -0.5234 35 1 4.7113 2.7291 0.5742 36 1 6.3788 5.4991 0.2677 37 1 6.9441 7.1929 1.9677 38 1 5.5955 7.3670 4.0200 39 1 2.6363 6.6063 4.5688 40 1 3.0417 4.9254 4.9909 41 1 4.0824 6.2583 5.5464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449797146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:44 Heat of formation + Delta-G solvation = -60.979282 kcal Electronic energy + Delta-G solvation = -23591.897401 eV Core-core repulsion = 20243.408659 eV Total energy + Delta-G solvation = -3348.488742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.46114 -40.56712 -38.41247 -37.07979 -34.85278 -34.46378 -32.66689 -31.73650 -30.29945 -29.03844 -27.67902 -25.71761 -25.04026 -23.66164 -22.93559 -21.76132 -20.25324 -18.83205 -18.55434 -18.01100 -17.75361 -17.25159 -16.49897 -16.26659 -15.99820 -15.58694 -14.85148 -14.71634 -14.52515 -14.48435 -14.36250 -14.09012 -13.87259 -13.70830 -13.43407 -13.37338 -13.13256 -13.12204 -12.73936 -12.68523 -12.54934 -12.38176 -12.21205 -12.02721 -11.86379 -11.71371 -11.66718 -10.87263 -10.55816 -9.62478 -9.59182 -9.07583 -8.21072 -6.33098 0.33226 0.39231 1.40282 1.41905 1.46490 1.52626 1.70198 2.39003 2.55225 2.77623 3.09815 3.32412 3.50189 3.76891 3.83742 3.95890 4.09704 4.18315 4.33544 4.36102 4.42087 4.51507 4.54735 4.70803 4.75897 4.79157 4.81161 4.90601 4.94701 5.00988 5.05358 5.14456 5.28881 5.29927 5.44799 5.49532 5.57144 5.59701 5.69633 5.79012 6.02384 6.20258 6.40973 6.75501 7.11354 7.37157 8.84838 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.006724 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.806098 B = 4163.417738 C = 5954.458281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.106 3.894 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.537 4.537 6 H 0.052 0.948 7 C 0.032 3.968 8 N -0.915 5.915 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.271 1.271 13 C 0.519 3.481 14 O -0.581 6.581 15 C 0.074 3.926 16 H 0.113 0.887 17 C -0.073 4.073 18 C -0.184 4.184 19 C -0.088 4.088 20 C -0.136 4.136 21 C -0.086 4.086 22 C -0.114 4.114 23 C -0.105 4.105 24 C 0.068 3.932 25 O -0.301 6.301 26 H 0.091 0.909 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.268 0.732 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 6.221 8.636 10.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.016 4.016 3 N -0.319 5.319 4 C 0.126 3.874 5 C -0.575 4.575 6 H 0.070 0.930 7 C -0.169 4.169 8 N -0.553 5.553 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.205 1.205 12 H -0.196 1.196 13 C 0.307 3.693 14 O -0.463 6.463 15 C 0.015 3.985 16 H 0.130 0.870 17 C -0.110 4.110 18 C -0.185 4.185 19 C -0.106 4.106 20 C -0.154 4.154 21 C -0.104 4.104 22 C -0.115 4.115 23 C -0.162 4.162 24 C 0.024 3.976 25 O -0.215 6.215 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.151 0.849 37 H 0.180 0.820 38 H 0.186 0.814 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.216 5.890 9.160 11.113 hybrid contribution 0.607 -0.520 -1.109 1.367 sum 2.822 5.370 8.051 10.081 Atomic orbital electron populations 1.22032 0.94323 1.03399 1.01396 1.21503 0.95414 0.81871 1.02776 1.48180 1.62221 1.14699 1.06823 1.19271 0.96736 0.91770 0.79636 1.21506 0.98611 1.30866 1.06532 0.92973 1.25459 1.00275 0.94544 0.96621 1.69987 1.36384 1.32285 1.16692 0.85755 0.80773 0.77861 0.78594 1.20270 1.20526 1.19602 1.20124 0.77008 0.88501 0.83695 1.90595 1.55647 1.66662 1.33406 1.23038 1.00171 0.93671 0.81642 0.86995 1.21563 0.92066 0.96955 1.00441 1.21097 0.99662 1.00361 0.97393 1.20622 0.95051 0.94386 1.00526 1.21419 1.01431 0.99045 0.93478 1.21189 0.92803 0.97961 0.98419 1.19552 1.00028 0.94857 0.97033 1.20700 0.99499 1.02159 0.93799 1.19881 0.89681 0.91323 0.96737 1.86809 1.53230 1.53381 1.28045 0.89048 0.93748 0.92568 0.89814 0.91168 0.95083 0.95182 0.92244 0.87444 0.90982 0.84867 0.82000 0.81414 0.90428 0.93357 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 10.24 71.98 0.74 -3.91 16 2 C 0.11 3.88 6.22 86.38 0.54 4.42 16 3 N -0.59 -24.92 2.46 -826.15 -2.03 -26.95 16 4 C 0.25 11.25 4.72 85.63 0.40 11.66 16 5 C -0.54 -26.27 6.80 25.60 0.17 -26.09 16 6 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 7 C 0.03 1.60 5.46 84.66 0.46 2.06 16 8 N -0.91 -47.70 13.29 21.45 0.28 -47.42 16 9 Si 0.94 40.06 29.54 68.60 2.03 42.08 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 C 0.52 23.31 7.02 87.66 0.62 23.93 16 14 O -0.58 -28.88 16.06 15.20 0.24 -28.64 16 15 C 0.07 3.09 3.06 30.43 0.09 3.18 16 16 H 0.11 4.43 7.26 -2.39 -0.02 4.42 16 17 C -0.07 -2.99 4.71 30.73 0.14 -2.84 16 18 C -0.18 -6.74 6.27 -19.52 -0.12 -6.86 16 19 C -0.09 -2.61 10.03 22.18 0.22 -2.39 16 20 C -0.14 -3.10 10.07 22.31 0.22 -2.88 16 21 C -0.09 -1.91 9.66 22.21 0.21 -1.70 16 22 C -0.11 -3.27 5.90 -19.68 -0.12 -3.39 16 23 C -0.11 -2.45 9.98 71.24 0.71 -1.74 16 24 C 0.07 2.52 6.73 22.68 0.15 2.67 16 25 O -0.30 -12.69 10.26 -76.91 -0.79 -13.48 16 26 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.08 2.94 8.11 -2.39 -0.02 2.93 16 30 H 0.07 2.63 7.22 -2.39 -0.02 2.61 16 31 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 32 H 0.03 1.42 5.83 -2.38 -0.01 1.41 16 33 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 34 H 0.11 4.67 6.51 -2.39 -0.02 4.65 16 35 H 0.07 3.18 7.80 -2.39 -0.02 3.16 16 36 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 38 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.05 1.32 8.00 -2.39 -0.02 1.30 16 41 H 0.09 1.58 8.08 -2.39 -0.02 1.57 16 Total: -1.00 -62.19 339.54 5.21 -56.98 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 1.02 Total: 21.32 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 4.45 Total: -3.89 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -1.74 Total: -74.37 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.54 Total: -42.12 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.08 kcal Total: -62.19 5.21 -56.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449797146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.002 kcal (2) G-P(sol) polarization free energy of solvation -62.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds