Wall clock time and date at job start Tue Mar 31 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46611 * 2 1 4 4 C 1.46500 * 119.99992 * 274.99798 * 3 2 1 5 5 C 1.50699 * 109.47110 * 275.00305 * 4 3 2 6 6 H 1.07996 * 120.00403 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99914 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00116 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00160 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47498 * 59.99568 * 9 7 5 11 11 H 1.48502 * 109.47316 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.47066 * 299.99600 * 9 7 5 13 13 S 1.65602 * 120.00126 * 95.00218 * 3 2 1 14 14 O 1.42099 * 104.27990 * 153.92520 * 13 3 2 15 15 O 1.42103 * 104.27523 * 26.06835 * 13 3 2 16 16 C 1.81398 * 104.44827 * 269.99924 * 13 3 2 17 17 C 1.53003 * 109.47230 * 179.97438 * 16 13 3 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 13 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 1.09003 * 109.47393 * 60.00358 * 1 2 3 24 24 H 1.09007 * 109.46866 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47261 * 299.99702 * 1 2 3 26 26 H 1.08997 * 109.47261 * 240.00297 * 2 1 3 27 27 H 1.08997 * 109.46959 * 119.99660 * 2 1 3 28 28 H 1.09002 * 109.46941 * 35.00317 * 4 3 2 29 29 H 1.09006 * 109.46748 * 155.00046 * 4 3 2 30 30 H 0.96994 * 120.00550 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47351 * 60.00205 * 16 13 3 32 32 H 1.09000 * 109.46852 * 299.99697 * 16 13 3 33 33 H 1.08995 * 109.46922 * 59.99750 * 17 16 13 34 34 H 1.09000 * 109.47141 * 299.99747 * 17 16 13 35 35 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 36 36 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 37 37 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 38 38 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 39 39 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 40 40 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 41 41 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 42 42 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 43 43 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.4946 1.7889 -1.8823 6 1 4.1723 1.1119 -1.3836 7 6 3.8528 2.3615 -3.0844 8 7 3.0278 3.1864 -3.6915 9 14 5.5091 1.9646 -3.8513 10 1 5.5985 0.5048 -4.1086 11 1 5.6509 2.7021 -5.1324 12 1 6.5946 2.3710 -2.9229 13 16 2.4120 2.1203 1.4287 14 8 3.3701 3.1037 1.0621 15 8 2.7576 1.0478 2.2944 16 6 0.8698 2.9055 1.9723 17 6 1.1063 3.6296 3.2992 18 6 -0.1946 4.2913 3.7580 19 6 -1.2177 3.2293 4.2344 20 6 -2.1500 4.0046 5.1881 21 6 -1.3510 5.2174 5.6961 22 6 0.0401 5.1374 5.0341 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3616 1.8097 -1.9453 29 1 2.0919 3.1804 -1.0755 30 1 3.2795 3.5890 -4.5373 31 1 0.1018 2.1437 2.1064 32 1 0.5425 3.6229 1.2198 33 1 1.8743 4.3913 3.1655 34 1 1.4334 2.9119 4.0515 35 1 -0.6170 4.9034 2.9611 36 1 -0.7115 2.4241 4.7667 37 1 -1.7803 2.8341 3.3886 38 1 -2.4384 3.3699 6.0261 39 1 -3.0374 4.3402 4.6517 40 1 -1.8502 6.1417 5.4055 41 1 -1.2522 5.1719 6.7807 42 1 0.3954 6.1337 4.7711 43 1 0.7502 4.6427 5.6968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451163149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:15 Heat of formation + Delta-G solvation = -101.719846 kcal Electronic energy + Delta-G solvation = -22035.585950 eV Core-core repulsion = 18820.774516 eV Total energy + Delta-G solvation = -3214.811434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.59467 -36.49286 -36.03680 -35.20734 -33.48444 -32.63229 -29.96909 -28.91802 -27.99356 -26.57511 -23.42239 -23.01057 -21.51509 -20.45110 -20.06664 -18.09621 -16.98274 -16.39744 -16.18512 -15.73530 -15.70224 -14.95018 -14.70180 -14.26418 -13.86371 -13.57288 -13.43038 -13.15328 -12.87429 -12.55365 -12.08018 -11.94942 -11.66127 -11.64884 -11.60499 -11.38136 -11.30155 -11.28809 -11.23899 -10.96139 -10.87866 -10.73560 -10.61142 -10.60307 -10.44235 -10.36909 -10.06286 -9.91620 -9.66654 -8.40296 -7.99867 -6.02593 -4.05520 0.88532 3.36420 3.38658 3.39837 3.46291 4.28489 4.42860 4.45559 4.47668 4.59385 4.66212 4.86172 5.06026 5.19814 5.27471 5.31650 5.37328 5.40379 5.44399 5.47362 5.51450 5.66019 5.66456 5.72532 5.73723 5.76919 5.88167 5.89417 5.96102 6.02442 6.08040 6.18850 6.28831 6.29051 6.58898 6.65784 7.24229 7.42733 7.64423 7.95440 8.25595 8.96658 9.59055 11.06110 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024670 B = 0.004099 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.728496 B = 6829.549912 C = 7130.348449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 N -0.985 5.985 4 C 0.257 3.743 5 C -0.524 4.524 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.602 3.398 14 O -0.939 6.939 15 O -0.976 6.976 16 C -0.641 4.641 17 C -0.102 4.102 18 C -0.085 4.085 19 C -0.124 4.124 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.125 4.125 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.037 0.963 30 H 0.263 0.737 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.022 0.471 14.964 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.011 4.011 3 N -0.824 5.824 4 C 0.135 3.865 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.694 3.306 14 O -0.929 6.929 15 O -0.967 6.967 16 C -0.768 4.768 17 C -0.141 4.141 18 C -0.104 4.104 19 C -0.161 4.161 20 C -0.163 4.163 21 C -0.162 4.162 22 C -0.162 4.162 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.207 0.583 15.185 18.306 hybrid contribution 0.039 0.038 -0.738 0.740 sum -10.169 0.621 14.447 17.678 Atomic orbital electron populations 1.22302 0.97503 1.01591 1.01842 1.21157 0.92746 0.83418 1.03778 1.57446 1.81360 1.21061 1.22492 1.19042 0.97417 0.91118 0.78942 1.21455 1.02047 1.27498 1.05315 0.92173 1.24922 0.97341 0.94895 0.96916 1.69904 1.36168 1.30428 1.17293 0.86582 0.84309 0.78373 0.78327 1.20228 1.21242 1.20002 1.05186 0.76858 0.74858 0.73711 1.93627 1.55597 1.62312 1.81346 1.93498 1.82245 1.53491 1.67418 1.30887 1.25450 1.13186 1.07255 1.21291 0.98982 0.99804 0.94026 1.22110 0.94572 0.96422 0.97309 1.22492 0.96961 0.97845 0.98840 1.22130 0.98378 0.96842 0.98948 1.22120 0.95848 0.98278 0.99978 1.22463 0.97071 1.00127 0.96559 0.91839 0.92089 0.93623 0.89663 0.90317 0.94684 0.94535 0.92715 0.85694 0.85133 0.90345 0.90640 0.90113 0.91323 0.91531 0.92014 0.91994 0.91978 0.92011 0.91461 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.24 37.16 0.38 -1.99 16 2 C 0.12 1.98 6.38 -4.04 -0.03 1.96 16 3 N -0.99 -20.06 2.70 -115.66 -0.31 -20.37 16 4 C 0.26 6.35 5.01 -5.19 -0.03 6.32 16 5 C -0.52 -14.78 9.38 -34.44 -0.32 -15.10 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 9 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 S 2.60 49.74 5.37 -107.50 -0.58 49.16 16 14 O -0.94 -22.12 16.99 -57.54 -0.98 -23.10 16 15 O -0.98 -19.80 16.53 -57.54 -0.95 -20.75 16 16 C -0.64 -8.79 6.07 37.16 0.23 -8.57 16 17 C -0.10 -1.26 4.73 -26.73 -0.13 -1.39 16 18 C -0.08 -0.88 2.86 -88.59 -0.25 -1.14 16 19 C -0.12 -1.18 5.71 -25.03 -0.14 -1.33 16 20 C -0.13 -1.04 6.80 -25.61 -0.17 -1.22 16 21 C -0.12 -1.02 6.80 -25.62 -0.17 -1.19 16 22 C -0.12 -1.15 6.27 -25.07 -0.16 -1.30 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 25 H 0.04 0.55 6.96 -51.93 -0.36 0.19 16 26 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 27 H 0.08 1.29 6.82 -51.93 -0.35 0.94 16 28 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 29 H 0.04 0.95 7.61 -51.93 -0.40 0.56 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.12 1.46 6.48 -51.92 -0.34 1.12 16 32 H 0.13 1.72 8.14 -51.92 -0.42 1.29 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.88 8.00 -51.93 -0.42 0.46 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 37 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -33.13 355.16 -10.37 -43.50 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.73 Total: -1.99 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -0.89 Total: -23.31 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.42 Total: -45.88 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.93 Total: -43.85 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 49.74 SS G_CDS: -0.58 Total: 49.16 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.13 -10.37 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451163149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.219 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds