Wall clock time and date at job start Tue Mar 31 2020 06:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 117.00256 * 2 1 4 4 C 1.38755 * 120.05352 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94116 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05450 * 359.97438 * 5 4 3 7 7 C 1.38238 * 120.11442 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.97228 * 180.02562 * 7 6 5 9 9 H 1.09001 * 115.54699 * 154.33275 * 8 7 6 10 10 C 1.52991 * 117.51720 * 8.62938 * 8 7 6 11 11 C 1.52994 * 117.49761 * 300.00005 * 8 7 6 12 12 H 1.09007 * 117.50342 * 0.02562 * 11 8 7 13 13 N 1.46506 * 117.49982 * 215.00121 * 11 8 7 14 14 C 1.34777 * 120.00000 * 154.99813 * 13 11 8 15 15 O 1.21274 * 120.00145 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 13 11 17 17 C 1.52998 * 109.46973 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47348 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 C 1.38165 * 120.05525 * 0.28189 * 7 6 5 27 27 H 1.09001 * 109.47105 * 60.00184 * 1 2 3 28 28 H 1.08995 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47196 * 300.00401 * 1 2 3 30 30 H 1.07997 * 120.02878 * 0.03876 * 4 3 2 31 31 H 1.07996 * 119.97120 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.94338 * 180.02562 * 6 5 4 33 33 H 1.09002 * 117.50037 * 145.03268 * 10 8 7 34 34 H 1.08996 * 117.50165 * 0.02562 * 10 8 7 35 35 H 0.96996 * 120.00113 * 335.00383 * 13 11 8 36 36 H 1.09000 * 109.47333 * 60.00571 * 16 14 13 37 37 H 1.09002 * 109.47152 * 300.00044 * 16 14 13 38 38 H 1.09001 * 109.47671 * 60.00215 * 17 16 14 39 39 H 1.09006 * 109.47297 * 299.99934 * 17 16 14 40 40 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 41 41 H 1.08000 * 120.02842 * 179.74660 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6756 -0.0005 7 6 4.0560 2.5170 0.0011 8 6 5.5609 2.5980 0.0022 9 1 6.0776 1.7385 0.4294 10 6 6.1944 3.9757 0.2052 11 6 6.2308 3.3125 -1.1731 12 1 5.5830 3.7245 -1.9471 13 7 7.5177 2.7893 -1.6383 14 6 7.9130 3.0043 -2.9088 15 8 7.2036 3.6313 -3.6667 16 6 9.2365 2.4656 -3.3874 17 6 9.4418 2.8472 -4.8547 18 6 10.7651 2.3080 -5.3337 19 1 11.3967 1.7493 -4.6588 20 6 11.1694 2.5278 -6.6333 21 7 10.4006 3.2085 -7.4550 22 14 12.8100 1.8599 -7.2266 23 1 13.0087 2.2292 -8.6512 24 1 13.9053 2.4382 -6.4075 25 1 12.8198 0.3809 -7.0932 26 6 3.4311 1.2847 -0.0037 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2129 2.3204 -0.0003 31 1 1.3341 4.5113 -0.0019 32 1 3.7924 4.6379 -0.0005 33 1 7.1280 4.0227 0.7658 34 1 5.5229 4.8238 0.3383 35 1 8.0852 2.2881 -1.0321 36 1 9.2437 1.3800 -3.2896 37 1 10.0404 2.8900 -2.7860 38 1 9.4348 3.9328 -4.9523 39 1 8.6379 2.4231 -5.4564 40 1 9.5489 3.5556 -7.1467 41 1 4.0206 0.3798 -0.0066 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456536882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:31 Heat of formation + Delta-G solvation = -39.976386 kcal Electronic energy + Delta-G solvation = -21419.673478 eV Core-core repulsion = 18072.095490 eV Total energy + Delta-G solvation = -3347.577988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55405 -39.53477 -38.32428 -36.55874 -33.77319 -32.98901 -31.30625 -30.73422 -29.78065 -27.65987 -25.37820 -23.82822 -22.98986 -22.50662 -21.27999 -20.61944 -19.91768 -18.04620 -17.01773 -16.70478 -16.45996 -16.10093 -16.03185 -15.90513 -14.93608 -14.79048 -14.21412 -13.77657 -13.69649 -13.59813 -13.12108 -12.99618 -12.62485 -12.53774 -12.15211 -11.98390 -11.90554 -11.65218 -11.47720 -11.19235 -11.06244 -10.81013 -10.69686 -10.13290 -10.10915 -9.92512 -9.36468 -9.14661 -8.58670 -8.52661 -8.37173 -8.27110 -6.30755 -4.00938 1.01008 1.20160 2.93049 2.99751 3.26256 3.45244 3.46920 3.48739 3.67566 3.94907 4.43895 4.51005 4.58814 4.61517 4.69138 4.76961 4.78822 4.80694 4.87259 5.04682 5.10603 5.23971 5.31978 5.46866 5.46928 5.54787 5.70514 5.82262 5.91844 6.02554 6.10123 6.10894 6.18252 6.36529 6.48773 6.63761 6.73718 7.10688 7.52553 7.57758 7.74902 8.20309 8.50410 8.64467 8.93132 9.72771 11.10241 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025730 B = 0.002469 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.953239 B =11340.114880 C =11780.418583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.128 3.872 4 C -0.214 4.214 5 C -0.076 4.076 6 C -0.157 4.157 7 C -0.007 4.007 8 C -0.132 4.132 9 H 0.117 0.883 10 C -0.185 4.185 11 C 0.106 3.894 12 H 0.138 0.862 13 N -0.714 5.714 14 C 0.514 3.486 15 O -0.533 6.533 16 C -0.122 4.122 17 C 0.024 3.976 18 C -0.609 4.609 19 H 0.049 0.951 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.070 2.930 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.288 1.288 26 C -0.144 4.144 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.400 0.600 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.272 0.728 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.195 -2.793 21.306 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.083 3.917 4 C -0.233 4.233 5 C -0.094 4.094 6 C -0.175 4.175 7 C -0.007 4.007 8 C -0.152 4.152 9 H 0.135 0.865 10 C -0.223 4.223 11 C -0.001 4.001 12 H 0.155 0.845 13 N -0.366 5.366 14 C 0.303 3.697 15 O -0.408 6.408 16 C -0.162 4.162 17 C -0.014 4.014 18 C -0.647 4.647 19 H 0.068 0.932 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.899 3.101 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.215 1.215 26 C -0.163 4.163 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.234 0.766 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.608 -2.618 19.371 26.308 hybrid contribution -1.117 -0.099 1.859 2.172 sum -18.725 -2.717 21.230 28.438 Atomic orbital electron populations 1.23052 0.78388 1.03953 1.01332 1.86075 1.21385 1.26972 1.88734 1.18964 0.92205 0.84169 0.96333 1.21219 0.99954 0.92457 1.09685 1.20900 0.94452 0.97003 0.97068 1.21003 0.93749 0.98310 1.04417 1.18828 0.93040 0.92304 0.96532 1.21562 0.91219 0.97554 1.04855 0.86468 1.23636 1.02794 0.95224 1.00682 1.21688 0.88021 0.99406 0.91010 0.84455 1.45654 1.19564 1.57847 1.13505 1.21608 0.89113 0.78747 0.80243 1.90657 1.55915 1.39847 1.54406 1.21735 0.91365 1.01269 1.01860 1.19026 0.97172 0.96910 0.88270 1.22028 1.04481 1.38811 0.99391 0.93249 1.25857 1.04202 0.95491 0.93432 1.70736 1.12538 1.33342 1.38022 0.83533 0.74504 0.75849 0.76253 1.20772 1.21469 1.21474 1.20192 0.91281 0.98200 1.06632 0.92599 0.88224 0.92701 0.85589 0.85674 0.85517 0.87909 0.87610 0.76583 0.89922 0.89927 0.96683 0.96683 0.91724 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.32 10.50 -19.43 -0.20 -3.52 16 3 C 0.13 1.41 6.69 -39.22 -0.26 1.14 16 4 C -0.21 -2.02 9.04 -39.43 -0.36 -2.38 16 5 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 6 C -0.16 -1.57 9.30 -39.56 -0.37 -1.94 16 7 C -0.01 -0.07 5.61 -104.65 -0.59 -0.66 16 8 C -0.13 -1.35 5.96 -91.78 -0.55 -1.89 16 9 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 10 C -0.18 -1.76 9.78 -26.74 -0.26 -2.02 16 11 C 0.11 1.35 6.06 -67.93 -0.41 0.94 16 12 H 0.14 2.08 7.40 -51.93 -0.38 1.69 16 13 N -0.71 -10.03 5.57 -53.81 -0.30 -10.33 16 14 C 0.51 9.91 7.83 -10.99 -0.09 9.83 16 15 O -0.53 -12.57 15.55 5.56 0.09 -12.48 16 16 C -0.12 -2.50 5.64 -27.89 -0.16 -2.66 16 17 C 0.02 0.64 3.57 -27.88 -0.10 0.54 16 18 C -0.61 -17.63 9.11 -34.44 -0.31 -17.94 16 19 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 20 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 21 N -0.91 -29.02 13.65 55.43 0.76 -28.26 16 22 Si 1.07 25.60 29.90 -169.99 -5.08 20.52 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 C -0.14 -1.64 9.68 -39.43 -0.38 -2.02 16 27 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.13 1.09 6.02 -52.49 -0.32 0.78 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.11 0.90 6.18 -51.93 -0.32 0.58 16 35 H 0.40 4.31 8.83 -40.82 -0.36 3.95 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.01 0.43 7.97 -51.93 -0.41 0.02 16 39 H 0.01 0.44 7.97 -51.93 -0.41 0.02 16 40 H 0.27 8.80 7.22 -40.82 -0.29 8.51 16 41 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -35.91 347.83 -8.63 -44.54 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.79 Total: 2.96 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -3.34 Total: -18.66 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.46 Total: -38.59 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.12 Total: -16.00 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.91 -8.63 -44.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456536882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.562 kcal (2) G-P(sol) polarization free energy of solvation -35.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds