Wall clock time and date at job start Tue Mar 31 2020 06:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 117.00256 * 2 1 4 4 C 1.38755 * 120.05352 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94116 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05450 * 359.97438 * 5 4 3 7 7 C 1.38238 * 120.11442 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.97228 * 180.02562 * 7 6 5 9 9 H 1.09001 * 115.54699 * 154.33275 * 8 7 6 10 10 C 1.52991 * 117.51720 * 8.62938 * 8 7 6 11 11 C 1.52994 * 117.49761 * 300.00005 * 8 7 6 12 12 H 1.09007 * 117.50342 * 0.02562 * 11 8 7 13 13 N 1.46506 * 117.49982 * 215.00121 * 11 8 7 14 14 C 1.34777 * 120.00000 * 154.99813 * 13 11 8 15 15 O 1.21274 * 120.00145 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 13 11 17 17 C 1.52998 * 109.46973 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47348 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 C 1.38165 * 120.05525 * 0.28189 * 7 6 5 27 27 H 1.09001 * 109.47105 * 60.00184 * 1 2 3 28 28 H 1.08995 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47196 * 300.00401 * 1 2 3 30 30 H 1.07997 * 120.02878 * 0.03876 * 4 3 2 31 31 H 1.07996 * 119.97120 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.94338 * 180.02562 * 6 5 4 33 33 H 1.09002 * 117.50037 * 145.03268 * 10 8 7 34 34 H 1.08996 * 117.50165 * 0.02562 * 10 8 7 35 35 H 0.96996 * 120.00113 * 335.00383 * 13 11 8 36 36 H 1.09000 * 109.47333 * 60.00571 * 16 14 13 37 37 H 1.09002 * 109.47152 * 300.00044 * 16 14 13 38 38 H 1.09001 * 109.47671 * 60.00215 * 17 16 14 39 39 H 1.09006 * 109.47297 * 299.99934 * 17 16 14 40 40 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 41 41 H 1.08000 * 120.02842 * 179.74660 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6756 -0.0005 7 6 4.0560 2.5170 0.0011 8 6 5.5609 2.5980 0.0022 9 1 6.0776 1.7385 0.4294 10 6 6.1944 3.9757 0.2052 11 6 6.2308 3.3125 -1.1731 12 1 5.5830 3.7245 -1.9471 13 7 7.5177 2.7893 -1.6383 14 6 7.9130 3.0043 -2.9088 15 8 7.2036 3.6313 -3.6667 16 6 9.2365 2.4656 -3.3874 17 6 9.4418 2.8472 -4.8547 18 6 10.7651 2.3080 -5.3337 19 1 11.3967 1.7493 -4.6588 20 6 11.1694 2.5278 -6.6333 21 7 10.4006 3.2085 -7.4550 22 14 12.8100 1.8599 -7.2266 23 1 13.0087 2.2292 -8.6512 24 1 13.9053 2.4382 -6.4075 25 1 12.8198 0.3809 -7.0932 26 6 3.4311 1.2847 -0.0037 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2129 2.3204 -0.0003 31 1 1.3341 4.5113 -0.0019 32 1 3.7924 4.6379 -0.0005 33 1 7.1280 4.0227 0.7658 34 1 5.5229 4.8238 0.3383 35 1 8.0852 2.2881 -1.0321 36 1 9.2437 1.3800 -3.2896 37 1 10.0404 2.8900 -2.7860 38 1 9.4348 3.9328 -4.9523 39 1 8.6379 2.4231 -5.4564 40 1 9.5489 3.5556 -7.1467 41 1 4.0206 0.3798 -0.0066 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456536882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:30 Heat of formation + Delta-G solvation = -63.802113 kcal Electronic energy + Delta-G solvation = -21420.706639 eV Core-core repulsion = 18072.095490 eV Total energy + Delta-G solvation = -3348.611149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.36474 -40.78969 -39.30982 -37.48703 -35.93501 -34.27315 -32.73495 -31.97120 -30.62615 -28.21791 -27.37013 -24.69248 -24.40381 -23.56108 -22.61000 -21.60360 -21.20516 -19.10863 -18.76845 -17.72665 -17.67830 -17.19792 -16.78554 -16.66672 -16.55642 -15.73296 -15.58437 -15.46228 -14.84606 -14.51167 -14.42552 -14.16307 -13.79285 -13.78208 -13.58562 -13.25783 -12.71098 -12.68359 -12.58071 -12.52175 -12.09153 -12.04580 -12.02751 -11.86320 -11.76306 -11.53117 -11.02007 -10.67884 -10.55096 -10.11721 -9.52796 -9.17211 -8.69413 -6.41317 0.23435 0.43673 1.54429 1.54721 1.64949 1.83293 2.04098 2.32853 2.59259 2.61207 3.08726 3.17050 3.64836 3.70342 3.82790 3.87049 3.92759 4.06070 4.11955 4.25684 4.31385 4.34588 4.35897 4.39979 4.51210 4.67936 4.69558 4.77233 4.85898 4.97237 4.97521 5.07235 5.28104 5.28687 5.37004 5.44293 5.47505 5.61017 5.77065 5.93521 6.17507 6.41552 6.48964 6.53141 7.23628 7.44953 8.70501 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025730 B = 0.002469 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.953239 B =11340.114880 C =11780.418583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.113 3.887 4 C -0.216 4.216 5 C -0.080 4.080 6 C -0.167 4.167 7 C -0.023 4.023 8 C -0.114 4.114 9 H 0.133 0.867 10 C -0.158 4.158 11 C 0.069 3.931 12 H 0.107 0.893 13 N -0.688 5.688 14 C 0.515 3.485 15 O -0.589 6.589 16 C -0.112 4.112 17 C 0.026 3.974 18 C -0.619 4.619 19 H 0.068 0.932 20 C -0.047 4.047 21 N -0.940 5.940 22 Si 1.125 2.875 23 H -0.288 1.288 24 H -0.263 1.263 25 H -0.264 1.264 26 C -0.165 4.165 27 H 0.061 0.939 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.139 0.861 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.419 0.581 36 H 0.105 0.895 37 H 0.108 0.892 38 H -0.020 1.020 39 H -0.022 1.022 40 H 0.251 0.749 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.712 -3.574 23.854 29.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.068 3.932 4 C -0.235 4.235 5 C -0.098 4.098 6 C -0.185 4.185 7 C -0.023 4.023 8 C -0.133 4.133 9 H 0.151 0.849 10 C -0.196 4.196 11 C -0.037 4.037 12 H 0.125 0.875 13 N -0.339 5.339 14 C 0.304 3.696 15 O -0.469 6.469 16 C -0.152 4.152 17 C -0.012 4.012 18 C -0.656 4.656 19 H 0.087 0.913 20 C -0.244 4.244 21 N -0.578 5.578 22 Si 0.945 3.055 23 H -0.214 1.214 24 H -0.187 1.187 25 H -0.189 1.189 26 C -0.184 4.184 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.257 0.743 36 H 0.123 0.877 37 H 0.126 0.874 38 H -0.002 1.002 39 H -0.004 1.004 40 H 0.060 0.940 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.144 -3.426 22.019 28.116 hybrid contribution -1.422 0.133 1.143 1.830 sum -18.566 -3.292 23.162 29.867 Atomic orbital electron populations 1.23335 0.76408 1.05539 1.02267 1.86043 1.23550 1.27021 1.88752 1.19177 0.92405 0.84954 0.96664 1.21526 1.01170 0.92033 1.08728 1.21262 0.94458 0.97980 0.96070 1.21261 0.94408 0.98570 1.04224 1.18984 0.93497 0.92552 0.97262 1.21581 0.90994 0.98633 1.02079 0.84881 1.23756 1.03604 0.95301 0.96928 1.21686 0.87363 1.02758 0.91868 0.87492 1.45265 1.20172 1.56665 1.11815 1.21312 0.88403 0.78357 0.81554 1.90643 1.57269 1.42620 1.56328 1.21517 0.93149 1.02791 0.97725 1.18873 0.95547 0.94362 0.92426 1.22508 1.05069 1.38189 0.99859 0.91335 1.27700 1.07522 0.94868 0.94283 1.70898 1.12423 1.35624 1.38821 0.82865 0.70321 0.76640 0.75686 1.21396 1.18746 1.18884 1.20361 0.91959 0.98461 1.07608 0.92003 0.86472 0.91327 0.83351 0.83172 0.84343 0.85903 0.86356 0.74266 0.87694 0.87415 1.00180 1.00390 0.93960 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.90 10.50 -92.43 -0.97 -7.87 16 3 C 0.11 2.42 6.69 22.51 0.15 2.57 16 4 C -0.22 -3.76 9.04 22.37 0.20 -3.56 16 5 C -0.08 -1.33 10.04 22.25 0.22 -1.11 16 6 C -0.17 -3.13 9.30 22.28 0.21 -2.93 16 7 C -0.02 -0.47 5.61 -19.88 -0.11 -0.58 16 8 C -0.11 -2.12 5.96 -11.54 -0.07 -2.19 16 9 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 10 C -0.16 -2.61 9.78 30.59 0.30 -2.31 16 11 C 0.07 1.73 6.06 44.99 0.27 2.00 16 12 H 0.11 3.38 7.40 -2.38 -0.02 3.36 16 13 N -0.69 -18.54 5.57 -442.54 -2.46 -21.01 16 14 C 0.51 20.10 7.83 87.66 0.69 20.78 16 15 O -0.59 -29.24 15.55 -3.01 -0.05 -29.29 16 16 C -0.11 -4.54 5.64 29.85 0.17 -4.37 16 17 C 0.03 1.43 3.57 29.85 0.11 1.54 16 18 C -0.62 -35.93 9.11 25.60 0.23 -35.69 16 19 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 20 C -0.05 -2.83 5.46 84.65 0.46 -2.37 16 21 N -0.94 -62.00 13.65 21.45 0.29 -61.71 16 22 Si 1.13 50.67 29.90 68.60 2.05 52.72 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 26 C -0.17 -3.72 9.68 22.36 0.22 -3.50 16 27 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 28 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 30 H 0.15 1.78 6.30 -2.91 -0.02 1.77 16 31 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.14 2.16 6.02 -2.91 -0.02 2.15 16 33 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.12 1.69 6.18 -2.39 -0.01 1.68 16 35 H 0.42 7.94 8.83 -92.71 -0.82 7.13 16 36 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 37 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 38 H -0.02 -1.26 7.97 -2.39 -0.02 -1.28 16 39 H -0.02 -1.40 7.97 -2.38 -0.02 -1.42 16 40 H 0.25 17.24 7.22 -92.71 -0.67 16.57 16 41 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -82.44 347.83 3.35 -79.09 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.32 Total: 18.47 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 4.16 Total: -30.41 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -2.17 Total: -82.71 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -1.02 Total: -37.16 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Total: -82.44 3.35 -79.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456536882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.290 kcal (2) G-P(sol) polarization free energy of solvation -82.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds