Wall clock time and date at job start Tue Mar 31 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.46939 * 2 1 4 4 C 1.42906 * 113.99729 * 180.02562 * 3 2 1 5 5 C 1.53774 * 113.61170 * 209.99928 * 4 3 2 6 6 C 1.53780 * 87.08135 * 220.01522 * 5 4 3 7 7 C 1.50701 * 113.61580 * 139.98002 * 6 5 4 8 8 O 1.21284 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00232 * 180.02562 * 7 6 5 10 10 C 1.39927 * 120.00120 * 185.59207 * 9 7 6 11 11 C 1.39288 * 119.94862 * 214.64717 * 10 9 7 12 12 C 1.38491 * 120.43212 * 179.97438 * 11 10 9 13 13 C 1.37690 * 120.32113 * 0.02562 * 12 11 10 14 14 C 1.40747 * 119.88236 * 359.97438 * 13 12 11 15 15 C 1.41399 * 120.20465 * 179.72721 * 14 13 12 16 16 H 1.08006 * 119.99982 * 145.66468 * 15 14 13 17 17 C 1.39935 * 120.00566 * 325.65529 * 15 14 13 18 18 N 1.30828 * 119.99681 * 354.55500 * 17 15 14 19 19 Si 1.86797 * 120.00185 * 174.54781 * 17 15 14 20 20 H 1.48502 * 109.47364 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47122 * 120.00781 * 19 17 15 22 22 H 1.48507 * 109.46918 * 240.00613 * 19 17 15 23 23 C 1.38247 * 119.94889 * 34.64883 * 10 9 7 24 24 C 1.53780 * 113.61522 * 112.49811 * 4 3 2 25 25 H 1.08997 * 109.47341 * 60.00576 * 1 2 3 26 26 H 1.09008 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47401 * 300.00184 * 1 2 3 28 28 H 1.09004 * 109.47370 * 239.99537 * 2 1 3 29 29 H 1.09003 * 109.46952 * 119.99479 * 2 1 3 30 30 H 1.09005 * 112.90908 * 341.24647 * 4 3 2 31 31 H 1.09007 * 113.62058 * 105.46781 * 5 4 3 32 32 H 1.08999 * 113.61775 * 334.56113 * 5 4 3 33 33 H 1.09003 * 113.61414 * 270.80006 * 6 5 4 34 34 H 0.97002 * 119.99342 * 5.59807 * 9 7 6 35 35 H 1.07997 * 119.78697 * 359.97438 * 11 10 9 36 36 H 1.08005 * 119.84061 * 179.97438 * 12 11 10 37 37 H 1.07997 * 120.05715 * 180.02562 * 13 12 11 38 38 H 0.96994 * 119.99978 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.15995 * 0.02562 * 23 10 9 40 40 H 1.08998 * 113.61504 * 25.43534 * 24 4 3 41 41 H 1.08994 * 113.61400 * 254.52771 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9488 2.7250 0.7039 6 6 4.9896 2.8313 -0.4232 7 6 5.2272 4.2429 -0.8944 8 8 4.6189 5.1618 -0.3877 9 7 6.1148 4.4842 -1.8796 10 6 6.4222 5.8016 -2.2372 11 6 6.6950 6.1157 -3.5665 12 6 6.9999 7.4164 -3.9316 13 6 7.0372 8.4140 -2.9834 14 6 6.7637 8.1116 -1.6362 15 6 6.8057 9.1297 -0.6559 16 1 6.1231 9.1024 0.1806 17 6 7.7317 10.1727 -0.7694 18 7 8.6283 10.1505 -1.7219 19 14 7.6876 11.5965 0.4389 20 1 6.5873 11.3849 1.4135 21 1 8.9819 11.6717 1.1628 22 1 7.4587 12.8649 -0.2989 23 6 6.4547 6.7895 -1.2706 24 6 4.0018 2.0464 -1.3025 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.9290 0.5457 0.3219 31 1 4.3848 2.5316 1.6840 32 1 3.2304 3.5447 0.7135 33 1 5.9145 2.2931 -0.2157 34 1 6.5403 3.7445 -2.3407 35 1 6.6686 5.3399 -4.3173 36 1 7.2103 7.6491 -4.9651 37 1 7.2750 9.4269 -3.2729 38 1 9.2700 10.8736 -1.8008 39 1 6.2437 6.5469 -0.2395 40 1 3.2979 2.6805 -1.8414 41 1 4.4806 1.3050 -1.9421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456762157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:56 Heat of formation + Delta-G solvation = -47.739136 kcal Electronic energy + Delta-G solvation = -22062.778888 eV Core-core repulsion = 18714.864281 eV Total energy + Delta-G solvation = -3347.914606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38994 -38.76992 -37.22487 -35.99620 -34.36261 -32.94246 -31.22835 -29.77451 -28.50332 -25.82408 -25.71956 -25.20094 -23.06767 -21.79105 -20.86898 -20.08596 -19.24310 -17.84787 -17.40202 -16.14576 -15.92555 -15.73532 -15.50474 -14.92472 -14.59063 -14.47624 -14.08985 -13.50232 -13.13122 -12.97468 -12.80791 -12.73453 -12.51407 -12.14691 -11.78337 -11.67045 -11.61184 -11.19809 -11.13851 -11.10786 -10.96683 -10.88662 -10.76179 -10.40823 -10.10561 -9.62223 -9.54773 -9.34734 -9.11449 -8.89395 -7.35267 -6.88039 -6.58604 -4.32443 2.59743 2.85971 3.14273 3.19138 3.21885 3.32753 3.43102 3.80625 4.03926 4.33482 4.45237 4.61501 4.66905 4.75205 4.81854 4.94419 5.09025 5.11040 5.28940 5.39542 5.54085 5.63986 5.68742 5.70771 5.84014 5.86259 5.97097 6.19938 6.25102 6.37790 6.79671 7.02864 7.06213 7.10242 7.11037 7.31660 7.58661 7.75147 7.97270 8.15012 8.19374 8.29775 8.68675 8.77433 8.99242 9.01887 10.35655 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025607 B = 0.003077 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.181306 B = 9096.973898 C = 9804.789574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.371 6.371 4 C 0.063 3.937 5 C -0.112 4.112 6 C -0.137 4.137 7 C 0.516 3.484 8 O -0.514 6.514 9 N -0.668 5.668 10 C 0.145 3.855 11 C -0.251 4.251 12 C -0.098 4.098 13 C -0.157 4.157 14 C 0.120 3.880 15 C -0.464 4.464 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.812 5.812 19 Si 0.912 3.088 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.274 1.274 23 C -0.200 4.200 24 C -0.138 4.138 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.277 0.723 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.904 -18.331 1.385 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.290 6.290 4 C 0.005 3.995 5 C -0.150 4.150 6 C -0.158 4.158 7 C 0.302 3.698 8 O -0.389 6.389 9 N -0.311 5.311 10 C 0.054 3.946 11 C -0.272 4.272 12 C -0.117 4.117 13 C -0.177 4.177 14 C 0.117 3.883 15 C -0.495 4.495 16 H 0.095 0.905 17 C -0.143 4.143 18 N -0.439 5.439 19 Si 0.736 3.264 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.199 1.199 23 C -0.222 4.222 24 C -0.176 4.176 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.136 0.864 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.283 -17.394 1.714 18.935 hybrid contribution 0.682 -0.023 0.158 0.700 sum -6.601 -17.417 1.872 18.719 Atomic orbital electron populations 1.21752 0.93874 1.02080 1.03294 1.22507 0.95643 0.84206 0.99828 1.88016 1.20543 1.25974 1.94513 1.23663 0.81183 0.98027 0.96601 1.23113 0.97066 0.97945 0.96888 1.22499 0.99449 0.94374 0.99491 1.20252 0.79132 0.90413 0.79969 1.90749 1.46949 1.45544 1.55622 1.43470 1.43031 1.07667 1.36975 1.17465 1.01122 0.82670 0.93358 1.20110 1.17407 0.96761 0.92933 1.20508 1.00615 0.92865 0.97711 1.21370 1.05234 0.98601 0.92498 1.17520 0.87643 0.90776 0.92390 1.19553 1.16379 1.05387 1.08147 0.90483 1.25844 0.94191 0.98405 0.95837 1.69786 1.13547 1.31108 1.29443 0.86207 0.78966 0.80506 0.80672 1.18522 1.20103 1.19918 1.21091 1.11345 0.92469 0.97256 1.23437 0.97725 0.99314 0.97142 0.91787 0.91270 0.91805 0.93476 0.93479 0.89321 0.90477 0.87505 0.86821 0.76855 0.89216 0.88940 0.86396 0.91242 0.87610 0.88594 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.74 16 2 C 0.05 0.46 6.50 37.16 0.24 0.70 16 3 O -0.37 -4.34 10.35 -35.23 -0.36 -4.71 16 4 C 0.06 0.65 4.31 -25.92 -0.11 0.53 16 5 C -0.11 -1.38 7.24 -25.92 -0.19 -1.57 16 6 C -0.14 -1.67 4.15 -90.96 -0.38 -2.04 16 7 C 0.52 9.21 7.07 -10.98 -0.08 9.13 16 8 O -0.51 -11.66 13.69 5.55 0.08 -11.58 16 9 N -0.67 -11.95 5.33 -9.91 -0.05 -12.01 16 10 C 0.15 3.33 6.25 -83.77 -0.52 2.81 16 11 C -0.25 -5.57 9.97 -39.10 -0.39 -5.96 16 12 C -0.10 -2.31 10.02 -39.69 -0.40 -2.71 16 13 C -0.16 -4.19 8.62 -38.83 -0.33 -4.52 16 14 C 0.12 3.35 5.50 -106.85 -0.59 2.76 16 15 C -0.46 -13.01 9.04 -37.74 -0.34 -13.35 16 16 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 17 C 0.07 1.89 5.31 -17.34 -0.09 1.80 16 18 N -0.81 -21.70 10.97 55.55 0.61 -21.09 16 19 Si 0.91 19.68 29.56 -169.99 -5.03 14.66 16 20 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 23 C -0.20 -5.28 8.39 -38.68 -0.32 -5.60 16 24 C -0.14 -1.47 7.46 -25.92 -0.19 -1.67 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.68 7.87 -51.93 -0.41 0.27 16 31 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.11 1.63 7.43 -51.93 -0.39 1.24 16 33 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.40 5.47 8.82 -40.82 -0.36 5.11 16 35 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.09 1.92 8.06 -52.48 -0.42 1.49 16 37 H 0.12 3.23 6.48 -52.49 -0.34 2.89 16 38 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 39 H 0.11 2.87 6.51 -52.49 -0.34 2.53 16 40 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -32.14 343.94 -8.92 -41.06 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.03 Total: 8.91 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -3.32 Total: -20.43 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.56 Total: -33.09 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.29 Total: -16.29 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.14 -8.92 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456762157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.677 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds