Wall clock time and date at job start Tue Mar 31 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.46939 * 2 1 4 4 C 1.42906 * 113.99729 * 180.02562 * 3 2 1 5 5 C 1.53774 * 113.61170 * 209.99928 * 4 3 2 6 6 C 1.53780 * 87.08135 * 220.01522 * 5 4 3 7 7 C 1.50701 * 113.61580 * 139.98002 * 6 5 4 8 8 O 1.21284 * 119.99898 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00232 * 180.02562 * 7 6 5 10 10 C 1.39927 * 120.00120 * 185.59207 * 9 7 6 11 11 C 1.39288 * 119.94862 * 214.64717 * 10 9 7 12 12 C 1.38491 * 120.43212 * 179.97438 * 11 10 9 13 13 C 1.37690 * 120.32113 * 0.02562 * 12 11 10 14 14 C 1.40747 * 119.88236 * 359.97438 * 13 12 11 15 15 C 1.41399 * 120.20465 * 179.72721 * 14 13 12 16 16 H 1.08006 * 119.99982 * 145.66468 * 15 14 13 17 17 C 1.39935 * 120.00566 * 325.65529 * 15 14 13 18 18 N 1.30828 * 119.99681 * 354.55500 * 17 15 14 19 19 Si 1.86797 * 120.00185 * 174.54781 * 17 15 14 20 20 H 1.48502 * 109.47364 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47122 * 120.00781 * 19 17 15 22 22 H 1.48507 * 109.46918 * 240.00613 * 19 17 15 23 23 C 1.38247 * 119.94889 * 34.64883 * 10 9 7 24 24 C 1.53780 * 113.61522 * 112.49811 * 4 3 2 25 25 H 1.08997 * 109.47341 * 60.00576 * 1 2 3 26 26 H 1.09008 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47401 * 300.00184 * 1 2 3 28 28 H 1.09004 * 109.47370 * 239.99537 * 2 1 3 29 29 H 1.09003 * 109.46952 * 119.99479 * 2 1 3 30 30 H 1.09005 * 112.90908 * 341.24647 * 4 3 2 31 31 H 1.09007 * 113.62058 * 105.46781 * 5 4 3 32 32 H 1.08999 * 113.61775 * 334.56113 * 5 4 3 33 33 H 1.09003 * 113.61414 * 270.80006 * 6 5 4 34 34 H 0.97002 * 119.99342 * 5.59807 * 9 7 6 35 35 H 1.07997 * 119.78697 * 359.97438 * 11 10 9 36 36 H 1.08005 * 119.84061 * 179.97438 * 12 11 10 37 37 H 1.07997 * 120.05715 * 180.02562 * 13 12 11 38 38 H 0.96994 * 119.99978 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.15995 * 0.02562 * 23 10 9 40 40 H 1.08998 * 113.61504 * 25.43534 * 24 4 3 41 41 H 1.08994 * 113.61400 * 254.52771 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9488 2.7250 0.7039 6 6 4.9896 2.8313 -0.4232 7 6 5.2272 4.2429 -0.8944 8 8 4.6189 5.1618 -0.3877 9 7 6.1148 4.4842 -1.8796 10 6 6.4222 5.8016 -2.2372 11 6 6.6950 6.1157 -3.5665 12 6 6.9999 7.4164 -3.9316 13 6 7.0372 8.4140 -2.9834 14 6 6.7637 8.1116 -1.6362 15 6 6.8057 9.1297 -0.6559 16 1 6.1231 9.1024 0.1806 17 6 7.7317 10.1727 -0.7694 18 7 8.6283 10.1505 -1.7219 19 14 7.6876 11.5965 0.4389 20 1 6.5873 11.3849 1.4135 21 1 8.9819 11.6717 1.1628 22 1 7.4587 12.8649 -0.2989 23 6 6.4547 6.7895 -1.2706 24 6 4.0018 2.0464 -1.3025 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.9290 0.5457 0.3219 31 1 4.3848 2.5316 1.6840 32 1 3.2304 3.5447 0.7135 33 1 5.9145 2.2931 -0.2157 34 1 6.5403 3.7445 -2.3407 35 1 6.6686 5.3399 -4.3173 36 1 7.2103 7.6491 -4.9651 37 1 7.2750 9.4269 -3.2729 38 1 9.2700 10.8736 -1.8008 39 1 6.2437 6.5469 -0.2395 40 1 3.2979 2.6805 -1.8414 41 1 4.4806 1.3050 -1.9421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456762157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:56 Heat of formation + Delta-G solvation = -68.143028 kcal Electronic energy + Delta-G solvation = -22063.663667 eV Core-core repulsion = 18714.864281 eV Total energy + Delta-G solvation = -3348.799386 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66534 -40.01233 -38.83380 -37.01119 -36.14672 -34.79696 -31.88876 -31.75070 -30.24841 -27.31036 -26.80903 -26.71625 -23.72519 -23.31763 -22.72707 -21.53467 -20.44236 -19.50221 -18.72928 -17.47477 -17.24086 -16.89631 -16.55862 -16.51427 -16.41728 -15.80160 -15.43833 -14.80403 -14.79077 -14.37144 -14.01843 -13.78868 -13.58079 -13.47481 -13.40135 -13.02133 -12.90101 -12.84946 -12.48199 -12.45082 -12.19637 -12.05921 -11.96293 -11.79103 -11.56981 -11.46147 -11.19542 -10.88885 -10.60786 -10.34184 -9.34168 -8.75625 -8.54285 -6.41961 0.83760 0.96764 1.35205 1.44025 1.50689 1.77471 2.19830 2.23159 2.76919 2.87128 3.39422 3.53808 3.65899 3.75352 3.87242 4.09479 4.23660 4.31778 4.44020 4.45457 4.54893 4.58663 4.69915 4.78592 4.87051 4.96634 5.01745 5.05250 5.06605 5.08274 5.12419 5.22084 5.23061 5.31693 5.34410 5.76565 5.82859 6.03541 6.10879 6.34230 6.41076 6.65011 6.67810 6.93433 6.99117 7.34484 8.40527 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025607 B = 0.003077 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.181306 B = 9096.973898 C = 9804.789574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.047 3.953 3 O -0.403 6.403 4 C 0.075 3.925 5 C -0.126 4.126 6 C -0.124 4.124 7 C 0.509 3.491 8 O -0.572 6.572 9 N -0.656 5.656 10 C 0.152 3.848 11 C -0.239 4.239 12 C -0.096 4.096 13 C -0.183 4.183 14 C 0.087 3.913 15 C -0.508 4.508 16 H 0.059 0.941 17 C 0.033 3.967 18 N -0.838 5.838 19 Si 0.985 3.015 20 H -0.267 1.267 21 H -0.262 1.262 22 H -0.259 1.259 23 C -0.228 4.228 24 C -0.131 4.131 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.156 0.844 34 H 0.422 0.578 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.286 0.714 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.192 -21.268 0.506 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 O -0.323 6.323 4 C 0.017 3.983 5 C -0.164 4.164 6 C -0.145 4.145 7 C 0.299 3.701 8 O -0.450 6.450 9 N -0.302 5.302 10 C 0.058 3.942 11 C -0.260 4.260 12 C -0.115 4.115 13 C -0.203 4.203 14 C 0.084 3.916 15 C -0.539 4.539 16 H 0.077 0.923 17 C -0.179 4.179 18 N -0.465 5.465 19 Si 0.806 3.194 20 H -0.191 1.191 21 H -0.187 1.187 22 H -0.184 1.184 23 C -0.249 4.249 24 C -0.169 4.169 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.174 0.826 34 H 0.261 0.739 35 H 0.153 0.847 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.560 -20.394 0.802 21.438 hybrid contribution 0.390 0.752 0.372 0.925 sum -6.170 -19.642 1.174 20.622 Atomic orbital electron populations 1.21796 0.93745 1.03306 1.02278 1.22745 0.95906 0.82881 1.01316 1.87994 1.21405 1.28308 1.94591 1.23691 0.81016 0.98184 0.95369 1.23147 0.96798 0.98259 0.98229 1.22629 1.01503 0.90669 0.99710 1.21394 0.77678 0.92371 0.78700 1.90738 1.48961 1.48062 1.57200 1.43404 1.43054 1.06435 1.37299 1.17567 0.99166 0.84276 0.93157 1.20571 1.14789 0.97294 0.93316 1.20897 0.99063 0.92811 0.98705 1.21312 1.07360 0.98896 0.92715 1.17854 0.88780 0.91609 0.93315 1.19686 1.17932 1.07657 1.08587 0.92258 1.26656 0.93106 1.00449 0.97728 1.69829 1.13875 1.32163 1.30650 0.85128 0.79107 0.77078 0.78132 1.19122 1.18687 1.18381 1.21046 1.13373 0.93311 0.97187 1.23408 0.96665 0.99225 0.97628 0.92859 0.88914 0.92795 0.91923 0.91865 0.85430 0.88980 0.91688 0.82601 0.73928 0.84671 0.85621 0.88028 0.90314 0.89922 0.91459 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.05 0.67 6.50 71.98 0.47 1.14 16 3 O -0.40 -8.84 10.35 -148.98 -1.54 -10.39 16 4 C 0.07 1.32 4.31 31.12 0.13 1.45 16 5 C -0.13 -3.01 7.24 31.12 0.23 -2.79 16 6 C -0.12 -2.74 4.15 -11.01 -0.05 -2.79 16 7 C 0.51 18.08 7.07 87.66 0.62 18.70 16 8 O -0.57 -27.32 13.69 -3.04 -0.04 -27.36 16 9 N -0.66 -22.49 5.33 -303.65 -1.62 -24.11 16 10 C 0.15 6.90 6.25 38.10 0.24 7.14 16 11 C -0.24 -10.06 9.97 22.58 0.23 -9.84 16 12 C -0.10 -4.43 10.02 22.20 0.22 -4.21 16 13 C -0.18 -10.05 8.62 22.75 0.20 -9.85 16 14 C 0.09 5.14 5.50 -21.31 -0.12 5.02 16 15 C -0.51 -30.37 9.04 23.46 0.21 -30.16 16 16 H 0.06 3.59 7.85 -2.91 -0.02 3.56 16 17 C 0.03 1.80 5.31 85.25 0.45 2.25 16 18 N -0.84 -46.08 10.97 21.82 0.24 -45.84 16 19 Si 0.98 41.60 29.56 68.60 2.03 43.63 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 C -0.23 -12.59 8.39 22.85 0.19 -12.39 16 24 C -0.13 -2.41 7.46 31.12 0.23 -2.18 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.13 1.30 7.87 -2.38 -0.02 1.28 16 31 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.06 2.11 7.43 -2.39 -0.02 2.09 16 33 H 0.16 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.42 10.12 8.82 -92.71 -0.82 9.31 16 35 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 36 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.10 5.80 6.48 -2.91 -0.02 5.79 16 38 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 39 H 0.08 4.84 6.51 -2.91 -0.02 4.82 16 40 H 0.07 1.65 8.09 -2.39 -0.02 1.63 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -77.05 343.94 3.27 -73.78 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.21 Total: 30.10 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 3.99 Total: -39.81 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.38 Total: -69.95 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.58 Total: -37.74 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -77.05 3.27 -73.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456762157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.638 kcal (2) G-P(sol) polarization free energy of solvation -77.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds